Pregenerated sensors for LINC02253 (Homo sapiens)
Ensembl gene IDs: ENSG00000259485Ensembl transcript IDs: ENST00000559321.2, ENST00000560314.1, ENST00000653984.1, ENST00000655490.1, ENST00000656523.1, ENST00000659377.1, ENST00000660428.1, ENST00000664769.1, ENST00000666169.1, ENST00000669885.1
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCCGCGCCGGGGCCGCGGGTGGAGCTGCTTGCCACTCCAGCGCGGTaGACGCGCACTCCTCAGCCCTTGGGTGGTCGATGGGACCCGGGG | + |
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Preference number: 5 (lower is better) Translates to: SAPGPRVELLATPAR*TRTPQPLGGRWDPG Trigger: CCCCGGGTCCCATCGACCACCCAAGGGCTGAGGAGTGCGCGTGCACCGCGCTGGAGTGGCAAGCAGCTCCACCCGCGGCCCCGGCGCGGA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669885.1 |
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| CDS GCA 90 bp | GCTTCGCCTAGTGGATTCCGCGCCGGGGCCGCGGGTGGAGCTGCTTaGCACTCCAGCGCGGTGCACGCGCACTCCTCAGCCCTTGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: ASPSGFRAGAAGGAA*HSSAVHAHSSALGW Trigger: CCACCCAAGGGCTGAGGAGTGCGCGTGCACCGCGCTGGAGTGGCAAGCAGCTCCACCCGCGGCCCCGGCGCGGAATCCACTAGGCGAAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669885.1 |
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| CDS GCA 90 bp | GGGAGTGCCAGACAGTGGGCGCAGGACAGTGGGTGCAGCGCACCATaGGCGAGCCAAAGCAGGGCGAGACATTGCCTCACTCGGGAAGCG | + |
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Preference number: 5 (lower is better) Translates to: GSARQWAQDSGCSAP*ASQSRARHCLTREA Trigger: CGCTTCCCGAGTGAGGCAATGTCTCGCCCTGCTTTGGCTCGCGCATGGTGCGCTGCACCCACTGTCCTGCGCCCACTGTCTGGCACTCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS GCA 90 bp | TCAACTTATAGTGCAAGAGTCCAGCGTCCTTCCTGCAAAAGCACATaGCTGACTCAGGAGCCCAGCTGGCTTCGCCTAGTGGATTCCGCG | + |
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Preference number: 5 (lower is better) Translates to: STYSARVQRPSCKST*LTQEPSWLRLVDSA Trigger: CGCGGAATCCACTAGGCGAAGCCAGCTGGGCTCCTGAGTCAGGCATGTGCTTTTGCAGGAAGGACGCTGGACTCTTGCACTATAAGTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669885.1 |
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| CDS TCA 90 bp | CAGCTCGGGTCTACAGCTCCCAGCATGAGTGACGCAGAAGACAGGTaGTTTCTGCATTTCCATCTGAGGTACCGCGTTCATCTCACTAGG | + |
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Preference number: 5 (lower is better) Translates to: QLGSTAPSMSDAEDR*FLHFHLRYRVHLTR Trigger: CCTAGTGAGATGAACGCGGTACCTCAGATGGAAATGCAGAAATCACCTGTCTTCTGCGTCACTCATGCTGGGAGCTGTAGACCCGAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS TCA 90 bp | GATGGACGAACAGGAACAGCTCGGGTCTACAGCTCCCAGCATGAGTaGCGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTACCG | + |
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Preference number: 5 (lower is better) Translates to: DGRTGTARVYSSQHE*RRRQVISAFPSEVP Trigger: CGGTACCTCAGATGGAAATGCAGAAATCACCTGTCTTCTGCGTCACTCATGCTGGGAGCTGTAGACCCGAGCTGTTCCTGTTCGTCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS GCA 90 bp | GAGTCCAGCGTCCTTCCTGCAAAAGCACATGCCATGTCCAGAGTTTaGTCCTTCCGGTGGATTCGTGGTCTCGCTGACTTCAAGAATGGA | + |
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Preference number: 5 (lower is better) Translates to: ESSVLPAKAHAMSRV*SFRWIRGLADFKNG Trigger: TCCATTCTTGAAGTCAGCGAGACCACGAATCCACCGGAAGGAGCAAACTCTGGACATGGCATGTGCTTTTGCAGGAAGGACGCTGGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000653984.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 |
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| CDS TCA 90 bp | GCTTTTACTCATGGTGGAAGGCAAAGCTGGGGCAGGCATCTTGGCTaGAGATGTATGAGGCAAGAGTCCAGGGAAGCTGACTCAAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: AFTHGGRQSWGRHLG*RCMRQESREADSKV Trigger: CACCTTTGAGTCAGCTTCCCTGGACTCTTGCCTCATACATCTTCAGCCAAGATGCCTGCCCCAGCTTTGCCTTCCACCATGAGTAAAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000653984.1 ENST00000656523.1 ENST00000669885.1 |
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| CDS GCA 90 bp | TCAACTTATAGTGCAAGAGTCCAGCGTCCTTCCTGCAAAAGCACATaGCATGTCCAGAGTTTGCTCCTTCCGGTGGATTCGTGGTCTCGC | + |
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Preference number: 5 (lower is better) Translates to: STYSARVQRPSCKST*HVQSLLLPVDSWSR Trigger: GCGAGACCACGAATCCACCGGAAGGAGCAAACTCTGGACATGGCATGTGCTTTTGCAGGAAGGACGCTGGACTCTTGCACTATAAGTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000653984.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 |
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| CDS CCA 90 bp | AGGTTTTTCAGGCTGTACCAGAAGCATAGCGCCAGCATCTGCTTCTaGGGAGGACTTGGGAAGCTTTTACTCATGGTGGAAGGCAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: RFFRLYQKHSASICF*GGLGKLLLMVEGKA Trigger: AGCTTTGCCTTCCACCATGAGTAAAAGCTTCCCAAGTCCTCCCCAGAAGCAGATGCTGGCGCTATGCTTCTGGTACAGCCTGAAAAACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS GCA 90 bp | GCAAAATGCTTTCAGCCAAGTGTCAGGTGGAATCATGGTGAAGAATaGTCCACTCTTGGGCTTTCTAACTCTCTTGGTGTCGTCCTGACA | + |
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Preference number: 5 (lower is better) Translates to: AKCFQPSVRWNHGEE*STLGLSNSLGVVLT Trigger: TGTCAGGACGACACCAAGAGAGTTAGAAAGCCCAAGAGTGGAGCATTCTTCACCATGATTCCACCTGACACTTGGCTGAAAGCATTTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS CCA 90 bp | AGCTTTGTCTTCCTCAATTATAGCTTCCGTGATGTGTTCTCTGTGTaGAGCCCCAAAACCAATACTGTAACTTCGGGAGGTTCTGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SFVFLNYSFRDVFSV*SPKTNTVTSGGSVS Trigger: TGAAACAGAACCTCCCGAAGTTACAGTATTGGTTTTGGGGCTCCACACAGAGAACACATCACGGAAGCTATAATTGAGGAAGACAAAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 9 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS CCA 90 bp | GGCACAAAGCAAATTAGTGCAAAATGCTTTCAGCCAAGTGTCAGGTaGAATCATGGTGAAGAATGCTCCACTCTTGGGCTTTCTAACTCT | + |
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Preference number: 5 (lower is better) Translates to: GTKQISAKCFQPSVR*NHGEECSTLGLSNS Trigger: AGAGTTAGAAAGCCCAAGAGTGGAGCATTCTTCACCATGATTCCACCTGACACTTGGCTGAAAGCATTTTGCACTAATTTGCTTTGTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS TCA 90 bp | CTCCCAGACGTTAATTACCTCAGTGCTCTCTCTGCAAGTGTGCTGTaGTGTATTGTTTATAAGCGATGTTTTCAACTTATAGTGCAAGAG | + |
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Preference number: 5 (lower is better) Translates to: LPDVNYLSALSASVL*CIVYKRCFQLIVQE Trigger: CTCTTGCACTATAAGTTGAAAACATCGCTTATAAACAATACATCACAGCACACTTGCAGAGAGAGCACTGAGGTAATTAACGTCTGGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000664769.1 |
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| CDS GCA 72 bp | AGTGGATTCCGCGCCGGGGCCGCGGGTGGAGCTGCTTaGCACTCCAGCGCGGTGCACGCGCACTCCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SGFRAGAAGGAA*HSSAVHAHSSA Trigger: GGCTGAGGAGTGCGCGTGCACCGCGCTGGAGTGGCAAGCAGCTCCACCCGCGGCCCCGGCGCGGAATCCACT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669885.1 |
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| CDS CCA 72 bp | TCCTGCAAAAGCACATGCCTGACTCAGGAGCCCAGCTaGCTTCGCCTAGTGGATTCCGCGCCGGGGCCGCGG | + |
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Preference number: 6 (lower is better) Translates to: SCKSTCLTQEPS*LRLVDSAPGPR Trigger: CCGCGGCCCCGGCGCGGAATCCACTAGGCGAAGCCAGCTGGGCTCCTGAGTCAGGCATGTGCTTTTGCAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669885.1 |
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| CDS GCA 72 bp | AGCGCACCATGCGCGAGCCAAAGCAGGGCGAGACATTaGCTCACTCGGGAAGCGCAAGGGGTCAGGGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: SAPCASQSRARH*LTREAQGVREF Trigger: GAACTCCCTGACCCCTTGCGCTTCCCGAGTGAGGCAATGTCTCGCCCTGCTTTGGCTCGCGCATGGTGCGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS GCA 72 bp | AGACAGTGGGCGCAGGACAGTGGGTGCAGCGCACCATaGGCGAGCCAAAGCAGGGCGAGACATTGCCTCACT | + |
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Preference number: 6 (lower is better) Translates to: RQWAQDSGCSAP*ASQSRARHCLT Trigger: AGTGAGGCAATGTCTCGCCCTGCTTTGGCTCGCGCATGGTGCGCTGCACCCACTGTCCTGCGCCCACTGTCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS CCA 72 bp | ACGGGAAGCGGACCTGCGCTGTTTGCCGTTGCTGGCTaGGGTAAGCAGCTCTTATTCCCTTATTTTTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: TGSGPALFAVAG*GKQLLFPYFSC Trigger: GCAGGAAAAATAAGGGAATAAGAGCTGCTTACCCCAGCCAGCAACGGCAAACAGCGCAGGTCCGCTTCCCGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000653984.1 ENST00000660428.1 |
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| CDS GCA 72 bp | GTCCTTCCTGCAAAAGCACATGCCATGTCCAGAGTTTaGTCCTTCCGGTGGATTCGTGGTCTCGCTGACTTC | + |
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Preference number: 6 (lower is better) Translates to: VLPAKAHAMSRV*SFRWIRGLADF Trigger: GAAGTCAGCGAGACCACGAATCCACCGGAAGGAGCAAACTCTGGACATGGCATGTGCTTTTGCAGGAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000653984.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 |
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| CDS GCA 72 bp | AGTGCAAGAGTCCAGCGTCCTTCCTGCAAAAGCACATaGCATGTCCAGAGTTTGCTCCTTCCGGTGGATTCG | + |
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Preference number: 6 (lower is better) Translates to: SARVQRPSCKST*HVQSLLLPVDS Trigger: CGAATCCACCGGAAGGAGCAAACTCTGGACATGGCATGTGCTTTTGCAGGAAGGACGCTGGACTCTTGCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000653984.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 |
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| CDS CAA 90 bp | GGTGGATTCGTGGTCTCGCTGACTTCAAGAATGGAGCCCCGGACCTaGGCTGTAAGTGTCACAGCTCTTAAAGATGGCATGGACCCAAAG | + |
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Preference number: 6 (lower is better) Translates to: GGFVVSLTSRMEPRT*AVSVTALKDGMDPK Trigger: CTTTGGGTCCATGCCATCTTTAAGAGCTGTGACACTTACAGCCAAGGTCCGGGGCTCCATTCTTGAAGTCAGCGAGACCACGAATCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000653984.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 |
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| CDS TCA 72 bp | ACGAACAGGAACAGCTCGGGTCTACAGCTCCCAGCATaGGTGACGCAGAAGACAGGTGATTTCTGCATTTCC | + |
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Preference number: 6 (lower is better) Translates to: TNRNSSGLQLPA*VTQKTGDFCIS Trigger: GGAAATGCAGAAATCACCTGTCTTCTGCGTCACTCATGCTGGGAGCTGTAGACCCGAGCTGTTCCTGTTCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS CAA 72 bp | AGAAGCATAGCGCCAGCATCTGCTTCTGGGGAGGACTaGGGAAGCTTTTACTCATGGTGGAAGGCAAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: RSIAPASASGED*GSFYSWWKAKL Trigger: CAGCTTTGCCTTCCACCATGAGTAAAAGCTTCCCAAGTCCTCCCCAGAAGCAGATGCTGGCGCTATGCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS CAA 72 bp | GTGGTCTCGCTGACTTCAAGAATGGAGCCCCGGACCTaGGCTGTAAGTGTCACAGCTCTTAAAGATGGCATG | + |
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Preference number: 6 (lower is better) Translates to: VVSLTSRMEPRT*AVSVTALKDGM Trigger: CATGCCATCTTTAAGAGCTGTGACACTTACAGCCAAGGTCCGGGGCTCCATTCTTGAAGTCAGCGAGACCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000653984.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 |
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| CDS TCA 72 bp | GTGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTaGGGTACCGCGTTCATCTCACTAGGGAGTGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: VTQKTGDFCISI*GTAFISLGSAR Trigger: TCTGGCACTCCCTAGTGAGATGAACGCGGTACCTCAGATGGAAATGCAGAAATCACCTGTCTTCTGCGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS TCA 72 bp | ACAGGAACAGCTCGGGTCTACAGCTCCCAGCATGAGTaGCGCAGAAGACAGGTGATTTCTGCATTTCCATCT | + |
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Preference number: 6 (lower is better) Translates to: TGTARVYSSQHE*RRRQVISAFPS Trigger: AGATGGAAATGCAGAAATCACCTGTCTTCTGCGTCACTCATGCTGGGAGCTGTAGACCCGAGCTGTTCCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS GCA 72 bp | TTTTCAACTTATAGTGCAAGAGTCCAGCGTCCTTCCTaGAAAAGCACATGCCTGACTCAGGAGCCCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: FSTYSARVQRPS*KSTCLTQEPSW Trigger: CCAGCTGGGCTCCTGAGTCAGGCATGTGCTTTTGCAGGAAGGACGCTGGACTCTTGCACTATAAGTTGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669885.1 |
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| CDS CCA 72 bp | ACTTGGGAAGCTTTTACTCATGGTGGAAGGCAAAGCTaGGGCAGGCATAATAACAAGTGTGCTCTCCAAGGA | + |
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Preference number: 6 (lower is better) Translates to: TWEAFTHGGRQS*GRHNNKCALQG Trigger: TCCTTGGAGAGCACACTTGTTATTATGCCTGCCCCAGCTTTGCCTTCCACCATGAGTAAAAGCTTCCCAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000559321.2 ENST00000655490.1 ENST00000660428.1 ENST00000664769.1 |
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| CDS CAA 90 bp | TCCACTCTTGGGCTTTCTAACTCTCTTGGTGTCGTCCTGACAGCTTaGTCTTCCTCAATTATAGCTTCCGTGATGTGTTCTCTGTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: STLGLSNSLGVVLTA*SSSIIASVMCSLCG Trigger: TCCACACAGAGAACACATCACGGAAGCTATAATTGAGGAAGACAAAGCTGTCAGGACGACACCAAGAGAGTTAGAAAGCCCAAGAGTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS GCA 72 bp | TTTCAGCCAAGTGTCAGGTGGAATCATGGTGAAGAATaGTCCACTCTTGGGCTTTCTAACTCTCTTGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: FQPSVRWNHGEE*STLGLSNSLGV Trigger: GACACCAAGAGAGTTAGAAAGCCCAAGAGTGGAGCATTCTTCACCATGATTCCACCTGACACTTGGCTGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS CCA 72 bp | TATCTTATTTTGATGAACCTGGGATTACAGCCAAGATaGACGAACAGGAACAGCTCGGGTCTACAGCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: YLILMNLGLQPR*TNRNSSGLQLP Trigger: TGGGAGCTGTAGACCCGAGCTGTTCCTGTTCGTCCATCTTGGCTGTAATCCCAGGTTCATCAAAATAAGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000560314.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 |
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| CDS GCA 72 bp | TTTTCAACTTATAGTGCAAGAGTCCAGCGTCCTTCCTaGAAAAGCACATGCCATGTCCAGAGTTTGCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: FSTYSARVQRPS*KSTCHVQSLLL Trigger: AAGGAGCAAACTCTGGACATGGCATGTGCTTTTGCAGGAAGGACGCTGGACTCTTGCACTATAAGTTGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000653984.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 |
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| CDS CCA 72 bp | TTCCTCAATTATAGCTTCCGTGATGTGTTCTCTGTGTaGAGCCCCAAAACCAATACTGTAACTTCGGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: FLNYSFRDVFSV*SPKTNTVTSGG Trigger: ACCTCCCGAAGTTACAGTATTGGTTTTGGGGCTCCACACAGAGAACACATCACGGAAGCTATAATTGAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 9 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS CAA 72 bp | GGGCTTTCTAACTCTCTTGGTGTCGTCCTGACAGCTTaGTCTTCCTCAATTATAGCTTCCGTGATGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: GLSNSLGVVLTA*SSSIIASVMCS Trigger: AGAACACATCACGGAAGCTATAATTGAGGAAGACAAAGCTGTCAGGACGACACCAAGAGAGTTAGAAAGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS CCA 72 bp | CAAATTAGTGCAAAATGCTTTCAGCCAAGTGTCAGGTaGAATCATGGTGAAGAATGCTCCACTCTTGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: QISAKCFQPSVR*NHGEECSTLGL Trigger: AAGCCCAAGAGTGGAGCATTCTTCACCATGATTCCACCTGACACTTGGCTGAAAGCATTTTGCACTAATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000659377.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS CAA 90 bp | AACCAATACTGTAACTTCGGGAGGTTCTGTTTCAACAAAGACATCTaGAGCTCACTGAGGTTTAATTGGCTCAAGGTTTTTCAGGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: NQYCNFGRFCFNKDI*SSLRFNWLKVFQAV Trigger: TACAGCCTGAAAAACCTTGAGCCAATTAAACCTCAGTGAGCTCAAGATGTCTTTGTTGAAACAGAACCTCCCGAAGTTACAGTATTGGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 8 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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| CDS CAA 72 bp | TGTAACTTCGGGAGGTTCTGTTTCAACAAAGACATCTaGAGCTCACTGAGGTTTAATTGGCTCAAGGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: CNFGRFCFNKDI*SSLRFNWLKVF Trigger: AAAAACCTTGAGCCAATTAAACCTCAGTGAGCTCAAGATGTCTTTGTTGAAACAGAACCTCCCGAAGTTACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000559321.2 ENST00000653984.1 ENST00000655490.1 ENST00000656523.1 ENST00000660428.1 ENST00000664769.1 ENST00000666169.1 ENST00000669885.1 |
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