Pregenerated sensors for LINC02249 (Homo sapiens)
Ensembl gene IDs: ENSG00000225930Ensembl transcript IDs: ENST00000455163.1, ENST00000562624.2
Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | GAAGAAGGAGCAGCACTCACAAAGGTCCTGAGGCTGGAGAGGAGGTaGTATAATCCACACAACTGTAAGAAGCAGGTGTGGGCCTACGCA | + |
Preference number: 5 (lower is better) Translates to: EEGAALTKVLRLERR*YNPHNCKKQVWAYA Trigger: TGCGTAGGCCCACACCTGCTTCTTACAGTTGTGTGGATTATAGCACCTCCTCTCCAGCCTCAGGACCTTTGTGAGTGCTGCTCCTTCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000562624.2 |
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CDS CAA 72 bp | CCGGGGTGCCCAGGCTTCTGGCCTGCCCTGCAGATTTaGGACTTGCCAGACTTTATGATTAAAGGAACAAAT | + |
Preference number: 6 (lower is better) Translates to: PGCPGFWPALQI*DLPDFMIKGTN Trigger: ATTTGTTCCTTTAATCATAAAGTCTGGCAAGTCCAAAATCTGCAGGGCAGGCCAGAAGCCTGGGCACCCCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562624.2 |
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CDS CCA 72 bp | AGTAAAGGCCTTCAGAGAAAACAGACTGGAATTCCCTaGGAAAGAGGGAATTCTGCCTCCAGACCGTCTTCA | + |
Preference number: 6 (lower is better) Translates to: SKGLQRKQTGIP*ERGNSASRPSS Trigger: TGAAGACGGTCTGGAGGCAGAATTCCCTCTTTCCCAGGGAATTCCAGTCTGTTTTCTCTGAAGGCCTTTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562624.2 |
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CDS CAA 72 bp | TGCCCAGGCTTCTGGCCTGCCCTGCAGATTTTGGACTaGCCAGACTTTATGATTAAAGGAACAAATTATTAT | + |
Preference number: 6 (lower is better) Translates to: CPGFWPALQILD*PDFMIKGTNYY Trigger: ATAATAATTTGTTCCTTTAATCATAAAGTCTGGCAAGTCCAAAATCTGCAGGGCAGGCCAGAAGCCTGGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562624.2 |
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CDS CAA 90 bp | GATGCTTGGCATGAGTTAAGAATGGAAAGAGCTGTTTCACTAAATTaGTACCAAACATTGGGTGTTGTTTTGGATCCGTGGAACAGTGGG | + |
Preference number: 6 (lower is better) Translates to: DAWHELRMERAVSLN*YQTLGVVLDPWNSG Trigger: CCCACTGTTCCACGGATCCAAAACAACACCCAATGTTTGGTACAAATTTAGTGAAACAGCTCTTTCCATTCTTAACTCATGCCAAGCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000455163.1 ENST00000562624.2 |
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CDS CAA 90 bp | TTTCCGGGGTGCCCAGGCTTCTGGCCTGCCCTGCAGATTTTGGACTaGCCAGACTTTATGATTAAAGGAACAAATTATTATATAAATTAT | + |
Preference number: 6 (lower is better) Translates to: FPGCPGFWPALQILD*PDFMIKGTNYYINY Trigger: ATAATTTATATAATAATTTGTTCCTTTAATCATAAAGTCTGGCAAGTCCAAAATCTGCAGGGCAGGCCAGAAGCCTGGGCACCCCGGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000562624.2 |
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CDS CAA 72 bp | CATGAGTTAAGAATGGAAAGAGCTGTTTCACTAAATTaGTACCAAACATTGGGTGTTGTTTTGGATCCGTGG | + |
Preference number: 6 (lower is better) Translates to: HELRMERAVSLN*YQTLGVVLDPW Trigger: CCACGGATCCAAAACAACACCCAATGTTTGGTACAAATTTAGTGAAACAGCTCTTTCCATTCTTAACTCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000455163.1 ENST00000562624.2 |