Pregenerated sensors for LINC02248 (Homo sapiens)
Ensembl gene IDs: ENSG00000235160Ensembl transcript IDs: ENST00000450324.1, ENST00000451579.2, ENST00000658140.1, ENST00000662421.1, ENST00000670116.1
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCACCTCCCTGAGACCCTCTCATGGCCTCAGGGGATTCTCCCGATaGCGGGGAGGGCTGCTGGGAAGCTGCTTCCCACCACGGCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: STSLRPSHGLRGFSR*RGGLLGSCFPPRLC Trigger: ACACAGCCGTGGTGGGAAGCAGCTTCCCAGCAGCCCTCCCCGCCATCGGGAGAATCCCCTGAGGCCATGAGAGGGTCTCAGGGAGGTGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS TCA 90 bp | ACTGATCCCCTCACTGTCAGCTGCAGACCTCCCTGGCGCCCCGCCTaGGGCTTCGAGACTCTTGTCGGCTCCTGGTTCTGCCCTTTACTG | + |
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Preference number: 5 (lower is better) Translates to: TDPLTVSCRPPWRPA*GFETLVGSWFCPLL Trigger: CAGTAAAGGGCAGAACCAGGAGCCGACAAGAGTCTCGAAGCCTCAGGCGGGGCGCCAGGGAGGTCTGCAGCTGACAGTGAGGGGATCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450324.1 |
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| CDS CCA 90 bp | GGGAGGGCTGCTGGGAAGCTGCTTCCCACCACGGCTGTGTTCCCATaGGGCTTACTCAGGCACGGTCAGGCCCACACTGTCATCAACACT | + |
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Preference number: 5 (lower is better) Translates to: GRAAGKLLPTTAVFP*GLLRHGQAHTVINT Trigger: AGTGTTGATGACAGTGTGGGCCTGACCGTGCCTGAGTAAGCCCCATGGGAACACAGCCGTGGTGGGAAGCAGCTTCCCAGCAGCCCTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS TCA 90 bp | AGGAGTCCTAGGATTCAGGAGTGCACAGTGCCCTCGGTTCTCACTTaGTGGGCCGTCCACCTCCCTGAGACCCTCTCATGGCCTCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: RSPRIQECTVPSVLT*WAVHLPETLSWPQG Trigger: CCCCTGAGGCCATGAGAGGGTCTCAGGGAGGTGGACGGCCCATCAAGTGAGAACCGAGGGCACTGTGCACTCCTGAATCCTAGGACTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS GCA 90 bp | GACAAGACACAGCTAAGAGGAGTCCTAGGATTCAGGAGTGCACAGTaGCCTCGGTTCTCACTTGATGGGCCGTCCACCTCCCTGAGACCC | + |
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Preference number: 5 (lower is better) Translates to: DKTQLRGVLGFRSAQ*PRFSLDGPSTSLRP Trigger: GGGTCTCAGGGAGGTGGACGGCCCATCAAGTGAGAACCGAGGGCACTGTGCACTCCTGAATCCTAGGACTCCTCTTAGCTGTGTCTTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451579.2 |
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| CDS TCA 90 bp | CCACACGGCAGCCACACCTTCAAGCCCCACAGAGAACTGAAAACATaGGAGCGAGGGATCCCAGCTGCTCCAGTCTCCACAACAATTCAG | + |
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Preference number: 5 (lower is better) Translates to: PHGSHTFKPHRELKT*ERGIPAAPVSTTIQ Trigger: CTGAATTGTTGTGGAGACTGGAGCAGCTGGGATCCCTCGCTCTCATGTTTTCAGTTCTCTGTGGGGCTTGAAGGTGTGGCTGCCGTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450324.1 |
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| CDS TCA 90 bp | GTCCATTTCCACACGGCAGCCACACCTTCAAGCCCCACAGAGAACTaGAAACATGAGAGCGAGGGATCCCAGCTGCTCCAGTCTCCACAA | + |
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Preference number: 5 (lower is better) Translates to: VHFHTAATPSSPTEN*KHESEGSQLLQSPQ Trigger: TTGTGGAGACTGGAGCAGCTGGGATCCCTCGCTCTCATGTTTTCAGTTCTCTGTGGGGCTTGAAGGTGTGGCTGCCGTGTGGAAATGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450324.1 |
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| CDS GCA 90 bp | GTTCTGCCAAAGTGGAGTAGGGCTCAGGTATGGTCTCATGAGTGGTaGGAGGTCAGAGATAACCAGGTCCATGCAGGCTTGTGTTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: VLPKWSRAQVWSHEW*EVRDNQVHAGLCCS Trigger: GGAACAACACAAGCCTGCATGGACCTGGTTATCTCTGACCTCGCACCACTCATGAGACCATACCTGAGCCCTACTCCACTTTGGCAGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS CCA 90 bp | AGAGGCCATGCAACAGTTCTGCCAAAGTGGAGTAGGGCTCAGGTATaGTCTCATGAGTGGTGCGAGGTCAGAGATAACCAGGTCCATGCA | + |
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Preference number: 5 (lower is better) Translates to: RGHATVLPKWSRAQV*SHEWCEVRDNQVHA Trigger: TGCATGGACCTGGTTATCTCTGACCTCGCACCACTCATGAGACCATACCTGAGCCCTACTCCACTTTGGCAGAACTGTTGCATGGCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS CCA 90 bp | ACAGTTCTGCCAAAGTGGAGTAGGGCTCAGGTATGGTCTCATGAGTaGTGCGAGGTCAGAGATAACCAGGTCCATGCAGGCTTGTGTTGT | + |
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Preference number: 5 (lower is better) Translates to: TVLPKWSRAQVWSHE*CEVRDNQVHAGLCC Trigger: ACAACACAAGCCTGCATGGACCTGGTTATCTCTGACCTCGCACCACTCATGAGACCATACCTGAGCCCTACTCCACTTTGGCAGAACTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS TCA 90 bp | AAGGTGAAGCAAGGAGGGCCCAGACAGCAAGGCATTCCATTCCAGTaGATAGGAGAGTCAGGGAACTTAAAAACGGGTTCTCAGAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: KVKQGGPRQQGIPFQ*IGESGNLKTGSQSC Trigger: GCAACTCTGAGAACCCGTTTTTAAGTTCCCTGACTCTCCTATTCACTGGAATGGAATGCCTTGCTGTCTGGGCCCTCCTTGCTTCACCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670116.1 |
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| CDS CCA 90 bp | GAGAGGTATTATATGAAGAGAGGCCATGCAACAGTTCTGCCAAAGTaGAGTAGGGCTCAGGTATGGTCTCATGAGTGGTGCGAGGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: ERYYMKRGHATVLPK*SRAQVWSHEWCEVR Trigger: TCTGACCTCGCACCACTCATGAGACCATACCTGAGCCCTACTCCACTTTGGCAGAACTGTTGCATGGCCTCTCTTCATATAATACCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS CCA 90 bp | GTAGTCAGAGCTGTCCAAATTGACAGCACATCTGCAGATGTTCCGTaGAGCATCATCACCAAAAATGCACACGAAACTGCCACACCAAGC | + |
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Preference number: 5 (lower is better) Translates to: VVRAVQIDSTSADVP*SIITKNAHETATPS Trigger: GCTTGGTGTGGCAGTTTCGTGTGCATTTTTGGTGATGATGCTCCACGGAACATCTGCAGATGTGCTGTCAATTTGGACAGCTCTGACTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS TCA 90 bp | CTCGTTAGTACTTCCCATTCACTCGGTAGTCAGAGCTGTCCAAATTaGCAGCACATCTGCAGATGTTCCGTGGAGCATCATCACCAAAAA | + |
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Preference number: 5 (lower is better) Translates to: LVSTSHSLGSQSCPN*QHICRCSVEHHHQK Trigger: TTTTTGGTGATGATGCTCCACGGAACATCTGCAGATGTGCTGTCAATTTGGACAGCTCTGACTACCGAGTGAATGGGAAGTACTAACGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS GCA 90 bp | CAAACTGGAGGATTTCTTCTGCATCTCACTGTATCCACTCCATCATaGTCACTTCCAAGTTTCAGGCTGTGTGGAGTTAGGATAGGAACA | + |
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Preference number: 5 (lower is better) Translates to: QTGGFLLHLTVSTPS*SLPSFRLCGVRIGT Trigger: TGTTCCTATCCTAACTCCACACAGCCTGAAACTTGGAAGTGAGCATGATGGAGTGGATACAGTGAGATGCAGAAGAAATCCTCCAGTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS TCA 90 bp | CAGGTCCATGCAGGCTTGTGTTGTTCCACAGTGTCAACCTTTTATTaGTGCTATTTCAATCACAAAAGCCACGAACTTCATGGAGTTCCC | + |
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Preference number: 5 (lower is better) Translates to: QVHAGLCCSTVSTFY*CYFNHKSHELHGVP Trigger: GGGAACTCCATGAAGTTCGTGGCTTTTGTGATTGAAATAGCATCAATAAAAGGTTGACACTGTGGAACAACACAAGCCTGCATGGACCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS TCA 90 bp | ATGACACATATATCCAGCCTGTATAAAAGGAATGCTGGTAGGACATaGCTGGCTCTGCTATTAATTGTACCCCAAGTAGAGACAAGACAC | + |
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Preference number: 5 (lower is better) Translates to: MTHISSLYKRNAGRT*LALLLIVPQVETRH Trigger: GTGTCTTGTCTCTACTTGGGGTACAATTAATAGCAGAGCCAGTCATGTCCTACCAGCATTCCTTTTATACAGGCTGGATATATGTGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451579.2 |
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| CDS CCA 90 bp | TCCAGATCAGCAAACTTTTCCTGTAGATGGTCAGATAAGTATTTTTaGCTTTGCAGGCCATATGGTTACAACATTTCGGTGCTATCATTG | + |
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Preference number: 5 (lower is better) Translates to: SRSANFSCRWSDKYF*LCRPYGYNISVLSL Trigger: CAATGATAGCACCGAAATGTTGTAACCATATGGCCTGCAAAGCCAAAAATACTTATCTGACCATCTACAGGAAAAGTTTGCTGATCTGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS GCA 72 bp | ATGGCCTCAGGGGATTCTCCCGATGGCGGGGAGGGCTaGTGGGAAGCTGCTTCCCACCACGGCTGTGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: MASGDSPDGGEG*WEAASHHGCVP Trigger: GGGAACACAGCCGTGGTGGGAAGCAGCTTCCCAGCAGCCCTCCCCGCCATCGGGAGAATCCCCTGAGGCCAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS CCA 72 bp | GCCTCAGGGGATTCTCCCGATGGCGGGGAGGGCTGCTaGGAAGCTGCTTCCCACCACGGCTGTGTTCCCATG | + |
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Preference number: 6 (lower is better) Translates to: ASGDSPDGGEGC*EAASHHGCVPM Trigger: CATGGGAACACAGCCGTGGTGGGAAGCAGCTTCCCAGCAGCCCTCCCCGCCATCGGGAGAATCCCCTGAGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS TCA 72 bp | CTCACTGTCAGCTGCAGACCTCCCTGGCGCCCCGCCTaGGGCTTCGAGACTCTTGTCGGCTCCTGGTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: LTVSCRPPWRPA*GFETLVGSWFC Trigger: GCAGAACCAGGAGCCGACAAGAGTCTCGAAGCCTCAGGCGGGGCGCCAGGGAGGTCTGCAGCTGACAGTGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450324.1 |
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| CDS GCA 72 bp | GGATTCTCCCGATGGCGGGGAGGGCTGCTGGGAAGCTaGTTCCCACCACGGCTGTGTTCCCATGGGGCTTAC | + |
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Preference number: 6 (lower is better) Translates to: GFSRWRGGLLGS*FPPRLCSHGAY Trigger: GTAAGCCCCATGGGAACACAGCCGTGGTGGGAAGCAGCTTCCCAGCAGCCCTCCCCGCCATCGGGAGAATCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS CCA 72 bp | CTGAGACCCTCTCATGGCCTCAGGGGATTCTCCCGATaGCGGGGAGGGCTGCTGGGAAGCTGCTTCCCACCA | + |
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Preference number: 6 (lower is better) Translates to: LRPSHGLRGFSR*RGGLLGSCFPP Trigger: TGGTGGGAAGCAGCTTCCCAGCAGCCCTCCCCGCCATCGGGAGAATCCCCTGAGGCCATGAGAGGGTCTCAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS CAA 72 bp | GACCTCCCTGGCGCCCCGCCTGAGGCTTCGAGACTCTaGTCGGCTCCTGGTTCTGCCCTTTACTGCTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: DLPGAPPEASRL*SAPGSALYCSV Trigger: CACAGAGCAGTAAAGGGCAGAACCAGGAGCCGACAAGAGTCTCGAAGCCTCAGGCGGGGCGCCAGGGAGGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450324.1 |
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| CDS CAA 90 bp | TCAGCTGCAGACCTCCCTGGCGCCCCGCCTGAGGCTTCGAGACTCTaGTCGGCTCCTGGTTCTGCCCTTTACTGCTCTGTGCACACTGGC | + |
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Preference number: 6 (lower is better) Translates to: SAADLPGAPPEASRL*SAPGSALYCSVHTG Trigger: GCCAGTGTGCACAGAGCAGTAAAGGGCAGAACCAGGAGCCGACAAGAGTCTCGAAGCCTCAGGCGGGGCGCCAGGGAGGTCTGCAGCTGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450324.1 |
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| CDS TCA 72 bp | AGGATTCAGGAGTGCACAGTGCCCTCGGTTCTCACTTaGTGGGCCGTCCACCTCCCTGAGACCCTCTCATGG | + |
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Preference number: 6 (lower is better) Translates to: RIQECTVPSVLT*WAVHLPETLSW Trigger: CCATGAGAGGGTCTCAGGGAGGTGGACGGCCCATCAAGTGAGAACCGAGGGCACTGTGCACTCCTGAATCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS TCA 72 bp | CACACGGCAGCCACACCTTCAAGCCCCACAGAGAACTaGAAACATGAGAGCGAGGGATCCCAGCTGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: HTAATPSSPTEN*KHESEGSQLLQ Trigger: CTGGAGCAGCTGGGATCCCTCGCTCTCATGTTTTCAGTTCTCTGTGGGGCTTGAAGGTGTGGCTGCCGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450324.1 |
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| CDS GCA 72 bp | CAGCTAAGAGGAGTCCTAGGATTCAGGAGTGCACAGTaGCCTCGGTTCTCACTTGATGGGCCGTCCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: QLRGVLGFRSAQ*PRFSLDGPSTS Trigger: GGAGGTGGACGGCCCATCAAGTGAGAACCGAGGGCACTGTGCACTCCTGAATCCTAGGACTCCTCTTAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451579.2 |
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| CDS GCA 72 bp | GACCTAAGAGGAGTCCTAGGATTCAGGAGTGCACAGTaGCCTCGGTTCTCACTTGATGGGCCGTCCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: DLRGVLGFRSAQ*PRFSLDGPSTS Trigger: GGAGGTGGACGGCCCATCAAGTGAGAACCGAGGGCACTGTGCACTCCTGAATCCTAGGACTCCTCTTAGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS TCA 72 bp | AGCCACACCTTCAAGCCCCACAGAGAACTGAAAACATaGGAGCGAGGGATCCCAGCTGCTCCAGTCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: SHTFKPHRELKT*ERGIPAAPVST Trigger: TGTGGAGACTGGAGCAGCTGGGATCCCTCGCTCTCATGTTTTCAGTTCTCTGTGGGGCTTGAAGGTGTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450324.1 |
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| CDS CCA 72 bp | CCAAAGTGGAGTAGGGCTCAGGTATGGTCTCATGAGTaGTGCGAGGTCAGAGATAACCAGGTCCATGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: PKWSRAQVWSHE*CEVRDNQVHAG Trigger: GCCTGCATGGACCTGGTTATCTCTGACCTCGCACCACTCATGAGACCATACCTGAGCCCTACTCCACTTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS CCA 72 bp | GCAACAGTTCTGCCAAAGTGGAGTAGGGCTCAGGTATaGTCTCATGAGTGGTGCGAGGTCAGAGATAACCAG | + |
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Preference number: 6 (lower is better) Translates to: ATVLPKWSRAQV*SHEWCEVRDNQ Trigger: CTGGTTATCTCTGACCTCGCACCACTCATGAGACCATACCTGAGCCCTACTCCACTTTGGCAGAACTGTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS TCA 72 bp | CAAGGAGGGCCCAGACAGCAAGGCATTCCATTCCAGTaGATAGGAGAGTCAGGGAACTTAAAAACGGGTTCT | + |
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Preference number: 6 (lower is better) Translates to: QGGPRQQGIPFQ*IGESGNLKTGS Trigger: AGAACCCGTTTTTAAGTTCCCTGACTCTCCTATTCACTGGAATGGAATGCCTTGCTGTCTGGGCCCTCCTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670116.1 |
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| CDS TCA 72 bp | TCTGCTGCATCTGAAGAGATAAGAAAGCGACAGAGCTaGGGCTGGTCTCCAGACGGGGTTATGGTTATGGTT | + |
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Preference number: 6 (lower is better) Translates to: SAASEEIRKRQS*GWSPDGVMVMV Trigger: AACCATAACCATAACCCCGTCTGGAGACCAGCCTCAGCTCTGTCGCTTTCTTATCTCTTCAGATGCAGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670116.1 |
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| CDS CCA 72 bp | TATATGAAGAGAGGCCATGCAACAGTTCTGCCAAAGTaGAGTAGGGCTCAGGTATGGTCTCATGAGTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: YMKRGHATVLPK*SRAQVWSHEWC Trigger: GCACCACTCATGAGACCATACCTGAGCCCTACTCCACTTTGGCAGAACTGTTGCATGGCCTCTCTTCATATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS TCA 72 bp | ACTTCCCATTCACTCGGTAGTCAGAGCTGTCCAAATTaGCAGCACATCTGCAGATGTTCCGTGGAGCATCAT | + |
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Preference number: 6 (lower is better) Translates to: TSHSLGSQSCPN*QHICRCSVEHH Trigger: ATGATGCTCCACGGAACATCTGCAGATGTGCTGTCAATTTGGACAGCTCTGACTACCGAGTGAATGGGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS CCA 72 bp | GCTGTCCAAATTGACAGCACATCTGCAGATGTTCCGTaGAGCATCATCACCAAAAATGCACACGAAACTGCC | + |
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Preference number: 6 (lower is better) Translates to: AVQIDSTSADVP*SIITKNAHETA Trigger: GGCAGTTTCGTGTGCATTTTTGGTGATGATGCTCCACGGAACATCTGCAGATGTGCTGTCAATTTGGACAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS GCA 72 bp | ATCTGCAGATGTTCCGTGGAGCATCATCACCAAAAATaGACACGAAACTGCCACACCAAGCAATGTATGTGC | + |
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Preference number: 6 (lower is better) Translates to: ICRCSVEHHHQK*TRNCHTKQCMC Trigger: GCACATACATTGCTTGGTGTGGCAGTTTCGTGTGCATTTTTGGTGATGATGCTCCACGGAACATCTGCAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS CAA 90 bp | CCAGGTCCATGCAGGCTTGTGTTGTTCCACAGTGTCAACCTTTTATaGATGCTATTTCAATCACAAAAGCCACGAACTTCATGGAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: PGPCRLVLFHSVNLL*MLFQSQKPRTSWSS Trigger: GGAACTCCATGAAGTTCGTGGCTTTTGTGATTGAAATAGCATCAATAAAAGGTTGACACTGTGGAACAACACAAGCCTGCATGGACCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS TCA 72 bp | TCCATTAGTCTTCACAGGGAGCATATATCCTTTCTTTaGGCTGCGGTGTACGGTGTACGGAGAGGTATTATA | + |
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Preference number: 6 (lower is better) Translates to: SISLHREHISFL*AAVYGVRRGII Trigger: TATAATACCTCTCCGTACACCGTACACCGCAGCTCAAAGAAAGGATATATGCTCCCTGTGAAGACTAATGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS TCA 72 bp | ATATCCAGCCTGTATAAAAGGAATGCTGGTAGGACATaGCTGGCTCTGCTATTAATTGTACCCCAAGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: ISSLYKRNAGRT*LALLLIVPQVE Trigger: CTCTACTTGGGGTACAATTAATAGCAGAGCCAGTCATGTCCTACCAGCATTCCTTTTATACAGGCTGGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451579.2 |
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| CDS TCA 72 bp | GCAGGCTTGTGTTGTTCCACAGTGTCAACCTTTTATTaGTGCTATTTCAATCACAAAAGCCACGAACTTCAT | + |
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Preference number: 6 (lower is better) Translates to: AGLCCSTVSTFY*CYFNHKSHELH Trigger: ATGAAGTTCGTGGCTTTTGTGATTGAAATAGCATCAATAAAAGGTTGACACTGTGGAACAACACAAGCCTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS GCA 72 bp | TTTGGCTTTGCAGGCCATATGGTTACAACATTTCGGTaGTATCATTGTAACAGAGATGCTGTAGTCAATACT | + |
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Preference number: 6 (lower is better) Translates to: FGFAGHMVTTFR*YHCNRDAVVNT Trigger: AGTATTGACTACAGCATCTCTGTTACAATGATAGCACCGAAATGTTGTAACCATATGGCCTGCAAAGCCAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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| CDS CAA 72 bp | TGCAGGCTTGTGTTGTTCCACAGTGTCAACCTTTTATaGATGCTATTTCAATCACAAAAGCCACGAACTTCA | + |
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Preference number: 6 (lower is better) Translates to: CRLVLFHSVNLL*MLFQSQKPRTS Trigger: TGAAGTTCGTGGCTTTTGTGATTGAAATAGCATCAATAAAAGGTTGACACTGTGGAACAACACAAGCCTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658140.1 |
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| CDS GCA 72 bp | TTTTCCTGTAGATGGTCAGATAAGTATTTTTGGCTTTaGAGGCCATATGGTTACAACATTTCGGTGCTATCA | + |
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Preference number: 6 (lower is better) Translates to: FSCRWSDKYFWL*RPYGYNISVLS Trigger: TGATAGCACCGAAATGTTGTAACCATATGGCCTGCAAAGCCAAAAATACTTATCTGACCATCTACAGGAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000451579.2 ENST00000658140.1 ENST00000662421.1 ENST00000670116.1 |
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