RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02246 (Homo sapiens)

Ensembl gene IDs: ENSG00000281903

Ensembl transcript IDs: ENST00000412426.5, ENST00000418954.2, ENST00000593619.1, ENST00000625278.2, ENST00000627623.2, ENST00000630211.2, ENST00000630354.1

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp ACCATGACTGTAAGCTTCCTGAGGCCTCACCACAAGCCAAACAGATaGACGTGCCATGCTTGCACAACCTGCTCTCAGCTGGGCTCACTC +
Preference number: 5 (lower is better)
Translates to: TMTVSFLRPHHKPNR*TCHACTTCSQLGSL
Trigger: GAGTGAGCCCAGCTGAGAGCAGGTTGTGCAAGCATGGCACGTGCATCTGTTTGGCTTGTGGTGAGGCCTCAGGAAGCTTACAGTCATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412426.5
ENST00000418954.2
CDS GCA 90 bp ACTGTAAGCTTCCTGAGGCCTCACCACAAGCCAAACAGATGCACGTaGCATGCTTGCACAACCTGCTCTCAGCTGGGCTCACTCATGCAT +
Preference number: 5 (lower is better)
Translates to: TVSFLRPHHKPNRCT*HACTTCSQLGSLMH
Trigger: ATGCATGAGTGAGCCCAGCTGAGAGCAGGTTGTGCAAGCATGGCACGTGCATCTGTTTGGCTTGTGGTGAGGCCTCAGGAAGCTTACAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412426.5
ENST00000418954.2
CDS CCA 90 bp ACTTCTCTTATATTTCTCCAGCAAACTGGAAAGGGTGTGTTCTCGTaGCAGGGGCAGGAGTCTGTAATCCCAGCTACTCAGGAGGCCGAG +
Preference number: 5 (lower is better)
Translates to: TSLIFLQQTGKGVFS*QGQESVIPATQEAE
Trigger: CTCGGCCTCCTGAGTAGCTGGGATTACAGACTCCTGCCCCTGCCACGAGAACACACCCTTTCCAGTTTGCTGGAGAAATATAAGAGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000630211.2
CDS TCA 90 bp GATATGACGTGGATGTTTGTCCCCTCCAAATTTCATGTTGAAGTTTaGCCCCCAGTGTTGGAGGTGGGCCTAGTGGGAGATGTTCAGGTC +
Preference number: 5 (lower is better)
Translates to: DMTWMFVPSKFHVEV*PPVLEVGLVGDVQV
Trigger: GACCTGAACATCTCCCACTAGGCCCACCTCCAACACTGGGGGTCAAACTTCAACATGAAATTTGGAGGGGACAAACATCCACGTCATATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418954.2
CDS CCA 90 bp GGGCTAAATGGGTACCTCTATCTCATTAGTCAGCATGGAGCCTCCTaGCTGCATGCCTACATTTCAAGCCCAGCCAGAAAAACAACAACA +
Preference number: 5 (lower is better)
Translates to: GLNGYLYLISQHGAS*LHAYISSPARKTTT
Trigger: TGTTGTTGTTTTTCTGGCTGGGCTTGAAATGTAGGCATGCAGCCAGGAGGCTCCATGCTGACTAATGAGATAGAGGTACCCATTTAGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000412426.5
CDS TCA 90 bp CTTCAGCTGTATCAAGTCTTCCCTGTGGAGCCATATTCAGGCACATaGGCCAAACACATATCATGCGTCTTCTTCCTCTTGTACAAACTG +
Preference number: 5 (lower is better)
Translates to: LQLYQVFPVEPYSGT*AKHISCVFFLLYKL
Trigger: CAGTTTGTACAAGAGGAAGAAGACGCATGATATGTGTTTGGCTCATGTGCCTGAATATGGCTCCACAGGGAAGACTTGATACAGCTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000627623.2
CDS TCA 90 bp ATGCATCTGCTATCAGCTGGCTGGTTAACTGTAGTTAGTTCATCTTaGTGGCATCATTGGGGAAACTCAGCTCTCTTTCACTGGACTTCT +
Preference number: 5 (lower is better)
Translates to: MHLLSAGWLTVVSSS*WHHWGNSALFHWTS
Trigger: AGAAGTCCAGTGAAAGAGAGCTGAGTTTCCCCAATGATGCCATCAAGATGAACTAACTACAGTTAACCAGCCAGCTGATAGCAGATGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000412426.5
ENST00000418954.2
ENST00000625278.2
ENST00000630211.2
CDS CCA 90 bp AAGTCTCTAAAAAGCAATAGCTTCAGCTGTATCAAGTCTTCCCTGTaGAGCCATATTCAGGCACATGAGCCAAACACATATCATGCGTCT +
Preference number: 5 (lower is better)
Translates to: KSLKSNSFSCIKSSL*SHIQAHEPNTYHAS
Trigger: AGACGCATGATATGTGTTTGGCTCATGTGCCTGAATATGGCTCCACAGGGAAGACTTGATACAGCTGAAGCTATTGCTTTTTAGAGACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000627623.2
CDS TCA 90 bp GCTGGTCCCATCAGCTGGATAAGCACAGCAAAAATTAAGATGGTTTaGTATCCACATCTCCAGTTGCTTAAGTTGTTTACTCTGTTCCCT +
Preference number: 5 (lower is better)
Translates to: AGPISWISTAKIKMV*YPHLQLLKLFTLFP
Trigger: AGGGAACAGAGTAAACAACTTAAGCAACTGGAGATGTGGATATCAAACCATCTTAATTTTTGCTGTGCTTATCCAGCTGATGGGACCAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000630211.2
CDS CCA 90 bp CCATTGGTCCACATGCCCCACATCAGTATAAATCCTTGCAGAGTCTaGAGATTTATGTTTTCAGTTTGGCCTTTCTTTCGATTATTGGAG +
Preference number: 5 (lower is better)
Translates to: PLVHMPHISINPCRV*RFMFSVWPFFRLLE
Trigger: CTCCAATAATCGAAAGAAAGGCCAAACTGAAAACATAAATCTCCAGACTCTGCAAGGATTTATACTGATGTGGGGCATGTGGACCAATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000412426.5
CDS GCA 90 bp ATTAACTTACTATGGCTTCCATATTCCTCAGCATACATTAAACTATaGTGCAGTAACACATCAACCCCTAATTCCAAGGATATGGTAGGT +
Preference number: 5 (lower is better)
Translates to: INLLWLPYSSAYIKL*CSNTSTPNSKDMVG
Trigger: ACCTACCATATCCTTGGAATTAGGGGTTGATGTGTTACTGCAGCATAGTTTAATGTATGCTGAGGAATATGGAAGCCATAGTAAGTTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418954.2
CDS GCA 72 bp GAGGCCTCACCACAAGCCAAACAGATGCACGTGCCATaGTTGCACAACCTGCTCTCAGCTGGGCTCACTCAT +
Preference number: 6 (lower is better)
Translates to: EASPQAKQMHVP*LHNLLSAGLTH
Trigger: ATGAGTGAGCCCAGCTGAGAGCAGGTTGTGCAAGCATGGCACGTGCATCTGTTTGGCTTGTGGTGAGGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412426.5
ENST00000418954.2
CDS GCA 72 bp TTCCTGAGGCCTCACCACAAGCCAAACAGATGCACGTaGCATGCTTGCACAACCTGCTCTCAGCTGGGCTCA +
Preference number: 6 (lower is better)
Translates to: FLRPHHKPNRCT*HACTTCSQLGS
Trigger: TGAGCCCAGCTGAGAGCAGGTTGTGCAAGCATGGCACGTGCATCTGTTTGGCTTGTGGTGAGGCCTCAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412426.5
ENST00000418954.2
CDS CAA 72 bp GCCTCACCACAAGCCAAACAGATGCACGTGCCATGCTaGCACAACCTGCTCTCAGCTGGGCTCACTCATGCA +
Preference number: 6 (lower is better)
Translates to: ASPQAKQMHVPC*HNLLSAGLTHA
Trigger: TGCATGAGTGAGCCCAGCTGAGAGCAGGTTGTGCAAGCATGGCACGTGCATCTGTTTGGCTTGTGGTGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412426.5
ENST00000418954.2
CDS GCA 72 bp GTAAGCTTCCTGAGGCCTCACCACAAGCCAAACAGATaGACGTGCCATGCTTGCACAACCTGCTCTCAGCTG +
Preference number: 6 (lower is better)
Translates to: VSFLRPHHKPNR*TCHACTTCSQL
Trigger: CAGCTGAGAGCAGGTTGTGCAAGCATGGCACGTGCATCTGTTTGGCTTGTGGTGAGGCCTCAGGAAGCTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412426.5
ENST00000418954.2
CDS TCA 72 bp GGTGGGCCTAGTGGGAGATGTTCAGGTCATGGGAGCTaGTACCTCAGGAATGGCTTGGTGTTGTCTTCATGG +
Preference number: 6 (lower is better)
Translates to: GGPSGRCSGHGS*YLRNGLVLSSW
Trigger: CCATGAAGACAACACCAAGCCATTCCTGAGGTATCAGCTCCCATGACCTGAACATCTCCCACTAGGCCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418954.2
CDS TCA 72 bp GCCGCGCCCGGCCTGCTGCTTGTTTTTCTATGTTCCTaGTGGGATGAGACCTATTTCAGTGAAGCGTTCTTT +
Preference number: 6 (lower is better)
Translates to: AAPGLLLVFLCS*WDETYFSEAFF
Trigger: AAAGAACGCTTCACTGAAATAGGTCTCATCCCATCAGGAACATAGAAAAACAAGCAGCAGGCCGGGCGCGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000630354.1
CDS CCA 72 bp TGTTCTCGTGGCAGGGGCAGGAGTAGTTCTGGAGTCTaGGAAGTTCAAAATCAAGGTGCCAGCAGATTCCAT +
Preference number: 6 (lower is better)
Translates to: CSRGRGRSSSGV*EVQNQGASRFH
Trigger: ATGGAATCTGCTGGCACCTTGATTTTGAACTTCCCAGACTCCAGAACTACTCCTGCCCCTGCCACGAGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418954.2
CDS CCA 72 bp GGGTACCTCTATCTCATTAGTCAGCATGGAGCCTCCTaGCTGCATGCCTACATTTCAAGCCCAGCCAGAAAA +
Preference number: 6 (lower is better)
Translates to: GYLYLISQHGAS*LHAYISSPARK
Trigger: TTTTCTGGCTGGGCTTGAAATGTAGGCATGCAGCCAGGAGGCTCCATGCTGACTAATGAGATAGAGGTACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000412426.5
CDS CCA 72 bp ATATTTCTCCAGCAAACTGGAAAGGGTGTGTTCTCGTaGCAGGGGCAGGAGTCTGTAATCCCAGCTACTCAG +
Preference number: 6 (lower is better)
Translates to: IFLQQTGKGVFS*QGQESVIPATQ
Trigger: CTGAGTAGCTGGGATTACAGACTCCTGCCCCTGCCACGAGAACACACCCTTTCCAGTTTGCTGGAGAAATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000630211.2
CDS CCA 72 bp CTTTCACTGGACTTCTCTTATATTTCTCCAGCAAACTaGAAAGGGTGTGTTCTCGTGGCAGGGGCAGGAGTC +
Preference number: 6 (lower is better)
Translates to: LSLDFSYISPAN*KGCVLVAGAGV
Trigger: GACTCCTGCCCCTGCCACGAGAACACACCCTTTCCAGTTTGCTGGAGAAATATAAGAGAAGTCCAGTGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000625278.2
ENST00000630211.2
CDS TCA 72 bp TATGACGTGGATGTTTGTCCCCTCCAAATTTCATGTTaGAGTTTGACCCCCAGTGTTGGAGGTGGGCCTAGT +
Preference number: 6 (lower is better)
Translates to: YDVDVCPLQISC*SLTPSVGGGPS
Trigger: ACTAGGCCCACCTCCAACACTGGGGGTCAAACTTCAACATGAAATTTGGAGGGGACAAACATCCACGTCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418954.2
CDS GCA 72 bp ACCTCTATCTCATTAGTCAGCATGGAGCCTCCTGGCTaGATGCCTACATTTCAAGCCCAGCCAGAAAAACAA +
Preference number: 6 (lower is better)
Translates to: TSISLVSMEPPG*MPTFQAQPEKQ
Trigger: TTGTTTTTCTGGCTGGGCTTGAAATGTAGGCATGCAGCCAGGAGGCTCCATGCTGACTAATGAGATAGAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000412426.5
CDS CCA 72 bp CTTTCACTGGACTTCTCTTATATTTCTCCAGCAAACTaGAAAGGGTGTGTTCTCGTGGCAGGGGCAGGAGTA +
Preference number: 6 (lower is better)
Translates to: LSLDFSYISPAN*KGCVLVAGAGV
Trigger: TACTCCTGCCCCTGCCACGAGAACACACCCTTTCCAGTTTGCTGGAGAAATATAAGAGAAGTCCAGTGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000412426.5
ENST00000418954.2
CDS TCA 72 bp TCAGGAATGGCTTGGTGTTGTCTTCATGGTAGTGAATaGGTTCTCACTCTACGAGTTCACGTGATGTACTGG +
Preference number: 6 (lower is better)
Translates to: SGMAWCCLHGSE*VLTLRVHVMYW
Trigger: CCAGTACATCACGTGAACTCGTAGAGTGAGAACTCATTCACTACCATGAAGACAACACCAAGCCATTCCTGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412426.5
ENST00000418954.2
CDS CAA 72 bp GCCATTGGTCCACATGCCCCACATCAGTATAAATCCTaGCAGAGTCTGGAGATTTATGTTTTCAGTTTGGCC +
Preference number: 6 (lower is better)
Translates to: AIGPHAPHQYKS*QSLEIYVFSLA
Trigger: GGCCAAACTGAAAACATAAATCTCCAGACTCTGCAAGGATTTATACTGATGTGGGGCATGTGGACCAATGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000412426.5
CDS TCA 72 bp CTATCAGCTGGCTGGTTAACTGTAGTTAGTTCATCTTaGTGGCATCATTGGGGAAACTCAGCTCTCTTTCAC +
Preference number: 6 (lower is better)
Translates to: LSAGWLTVVSSS*WHHWGNSALFH
Trigger: GTGAAAGAGAGCTGAGTTTCCCCAATGATGCCATCAAGATGAACTAACTACAGTTAACCAGCCAGCTGATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000412426.5
ENST00000418954.2
ENST00000625278.2
ENST00000630211.2
CDS CAA 90 bp ATCCTGAAAGCCATTGGTCCACATGCCCCACATCAGTATAAATCCTaGCAGAGTCTGGAGATTTATGTTTTCAGTTTGGCCTTTCTTTCG +
Preference number: 6 (lower is better)
Translates to: ILKAIGPHAPHQYKS*QSLEIYVFSLAFLS
Trigger: CGAAAGAAAGGCCAAACTGAAAACATAAATCTCCAGACTCTGCAAGGATTTATACTGATGTGGGGCATGTGGACCAATGGCTTTCAGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000412426.5
CDS CAA 90 bp CGAGGAACACTGTTTCACATTTTCCAGGTATTTTGGAATCCTACCTaGAGGAGAAATTCAACAGAAGACACTGTGGTCAGGACCTCTCTA +
Preference number: 6 (lower is better)
Translates to: RGTLFHIFQVFWNPT*RRNSTEDTVVRTSL
Trigger: TAGAGAGGTCCTGACCACAGTGTCTTCTGTTGAATTTCTCCTCAAGGTAGGATTCCAAAATACCTGGAAAATGTGAAACAGTGTTCCTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000593619.1
CDS TCA 72 bp TTTCAGTTTCACCTCTGTAAAGCCCTTTTCTCCAAATaGGGTCATAATCTAAAGCAACAGAGGACAGGACTT +
Preference number: 6 (lower is better)
Translates to: FQFHLCKALFSK*GHNLKQQRTGL
Trigger: AAGTCCTGTCCTCTGTTGCTTTAGATTATGACCTCATTTGGAGAAAAGGGCTTTACAGAGGTGAAACTGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000627623.2