Pregenerated sensors for LINC02243 (Homo sapiens)
Ensembl gene IDs: ENSG00000236091Ensembl transcript IDs: ENST00000441841.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCCCCTTCTTACCCAGTGATAAGGGAATTCTTCATGCCCTACAATaGAAGAAGGAACAGGCTTGTGAGCAGCTAGTACATCGCTGTAGC | + |
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Preference number: 5 (lower is better) Translates to: SPFLPSDKGILHALQ*KKEQACEQLVHRCS Trigger: GCTACAGCGATGTACTAGCTGCTCACAAGCCTGTTCCTTCTTCCATTGTAGGGCATGAAGAATTCCCTTATCACTGGGTAAGAAGGGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441841.1 |
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| CDS CCA 72 bp | CATCTTGATGACCTAGGCCTTCTATGTCGATCTCGCTaGGAGCTACAGGCCGGAGCTGTTCCTGTTCGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: HLDDLGLLCRSR*ELQAGAVPVRP Trigger: TGGCCGAACAGGAACAGCTCCGGCCTGTAGCTCCCAGCGAGATCGACATAGAAGGCCTAGGTCATCAAGATG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441841.1 |
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| CDS CAA 90 bp | ATCTCGCTGGGAGCTACAGGCCGGAGCTGTTCCTGTTCGGCCATCTaGCCAGCAATCGAGATTTATTTTTATAATGAATTGGTTCACATA | + |
|
Preference number: 6 (lower is better) Translates to: ISLGATGRSCSCSAI*PAIEIYFYNELVHI Trigger: TATGTGAACCAATTCATTATAAAAATAAATCTCGATTGCTGGCAAGATGGCCGAACAGGAACAGCTCCGGCCTGTAGCTCCCAGCGAGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441841.1 |
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| CDS GCA 72 bp | GAGCTACAGGCCGGAGCTGTTCCTGTTCGGCCATCTTaGCAGCAATCGAGATTTATTTTTATAATGAATTGG | + |
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Preference number: 6 (lower is better) Translates to: ELQAGAVPVRPS*QQSRFIFIMNW Trigger: CCAATTCATTATAAAAATAAATCTCGATTGCTGGCAAGATGGCCGAACAGGAACAGCTCCGGCCTGTAGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441841.1 |
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| CDS CAA 72 bp | GGAGCTACAGGCCGGAGCTGTTCCTGTTCGGCCATCTaGCCAGCAATCGAGATTTATTTTTATAATGAATTG | + |
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Preference number: 6 (lower is better) Translates to: GATGRSCSCSAI*PAIEIYFYNEL Trigger: CAATTCATTATAAAAATAAATCTCGATTGCTGGCAAGATGGCCGAACAGGAACAGCTCCGGCCTGTAGCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441841.1 |
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