Pregenerated sensors for LINC02239 (Homo sapiens)
Ensembl gene IDs: ENSG00000248908Ensembl transcript IDs: ENST00000504339.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTCCCCACTGCAAATGAACAAACTTCCCGAGGCTCCATCCCAGTGTaGACTCATCCCAGGGACAGGTGGGTTGGGGGTTCTCTGGTGACC | + |
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Preference number: 5 (lower is better) Translates to: LPTANEQTSRGSIPV*THPRDRWVGGSLVT Trigger: GGTCACCAGAGAACCCCCAACCCACCTGTCCCTGGGATGAGTGCACACTGGGATGGAGCCTCGGGAAGTTTGTTCATTTGCAGTGGGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS TCA 90 bp | CAGTGTGCACTCATCCCAGGGACAGGTGGGTTGGGGGTTCTCTGGTaGCCCCTTTATACTCAGCTCTCTCACTTGGTTGGCTGCAATTGG | + |
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Preference number: 5 (lower is better) Translates to: QCALIPGTGGLGVLW*PLYTQLSHLVGCNW Trigger: CCAATTGCAGCCAACCAAGTGAGAGAGCTGAGTATAAAGGGGTCACCAGAGAACCCCCAACCCACCTGTCCCTGGGATGAGTGCACACTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS TCA 90 bp | GGAAATAGTTTTGATCTCCAGGTCTCCCTGAAACTGCAAACATCTTaGGTACCTCATGGTATATGGCACAGCTCTGGAAAACTGCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: GNSFDLQVSLKLQTS*VPHGIWHSSGKLLW Trigger: CCACAGCAGTTTTCCAGAGCTGTGCCATATACCATGAGGTACTCAAGATGTTTGCAGTTTCAGGGAGACCTGGAGATCAAAACTATTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS CCA 90 bp | GAAACTGCAAACATCTTGAGTACCTCATGGTATATGGCACAGCTCTaGAAAACTGCTGTGGTAGCGGAAATGAAATCTGAACTCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: ETANILSTSWYMAQL*KTAVVAEMKSELFI Trigger: GATGAAGAGTTCAGATTTCATTTCCGCTACCACAGCAGTTTTCCAGAGCTGTGCCATATACCATGAGGTACTCAAGATGTTTGCAGTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS TCA 90 bp | CAGTTTACTATCATTGTGGAAATAGTTTTGATCTCCAGGTCTCCCTaGAACTGCAAACATCTTGAGTACCTCATGGTATATGGCACAGCT | + |
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Preference number: 5 (lower is better) Translates to: QFTIIVEIVLISRSP*NCKHLEYLMVYGTA Trigger: AGCTGTGCCATATACCATGAGGTACTCAAGATGTTTGCAGTTTCAGGGAGACCTGGAGATCAAAACTATTTCCACAATGATAGTAAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS CAA 72 bp | GCTAGGGTCCTGCAAGTGTGCGTCCTGCCTCACAGATaGAATTCCAGGTTCCACCCAGGAAGAGGAGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: ARVLQVCVLPHR*NSRFHPGRGGA Trigger: GGCCCCTCCTCTTCCTGGGTGGAACCTGGAATTCAATCTGTGAGGCAGGACGCACACTTGCAGGACCCTAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS TCA 72 bp | CTAGGGTCCTGCAAGTGTGCGTCCTGCCTCACAGATTaGATTCCAGGTTCCACCCAGGAAGAGGAGGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LGSCKCASCLTD*IPGSTQEEEGP Trigger: TGGCCCCTCCTCTTCCTGGGTGGAACCTGGAATTCAATCTGTGAGGCAGGACGCACACTTGCAGGACCCTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS CCA 72 bp | GGCTCCATCCCAGTGTGCACTCATCCCAGGGACAGGTaGGTTGGGGGTTCTCTGGTGACCCCTTTATACTCA | + |
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Preference number: 6 (lower is better) Translates to: GSIPVCTHPRDR*VGGSLVTPLYS Trigger: TGAGTATAAAGGGGTCACCAGAGAACCCCCAACCCACCTGTCCCTGGGATGAGTGCACACTGGGATGGAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS TCA 72 bp | CTCATCCCAGGGACAGGTGGGTTGGGGGTTCTCTGGTaGCCCCTTTATACTCAGCTCTCTCACTTGGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: LIPGTGGLGVLW*PLYTQLSHLVG Trigger: GCCAACCAAGTGAGAGAGCTGAGTATAAAGGGGTCACCAGAGAACCCCCAACCCACCTGTCCCTGGGATGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS CCA 72 bp | CATCCCAGTGTGCACTCATCCCAGGGACAGGTGGGTTaGGGGTTCTCTGGTGACCCCTTTATACTCAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: HPSVHSSQGQVG*GFSGDPFILSS Trigger: AGAGCTGAGTATAAAGGGGTCACCAGAGAACCCCCAACCCACCTGTCCCTGGGATGAGTGCACACTGGGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS TCA 72 bp | TTTGATCTCCAGGTCTCCCTGAAACTGCAAACATCTTaGGTACCTCATGGTATATGGCACAGCTCTGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: FDLQVSLKLQTS*VPHGIWHSSGK Trigger: TTTTCCAGAGCTGTGCCATATACCATGAGGTACTCAAGATGTTTGCAGTTTCAGGGAGACCTGGAGATCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS TCA 72 bp | AGTTCAGCTAAGAGCCAGTTTCTTGTCACATGGCCATaGGATATTAGACTCGCAGACACTTTGAAGGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: SSAKSQFLVTWP*DIRLADTLKVE Trigger: TTCAACCTTCAAAGTGTCTGCGAGTCTAATATCTCATGGCCATGTGACAAGAAACTGGCTCTTAGCTGAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS CCA 72 bp | AACATCTTGAGTACCTCATGGTATATGGCACAGCTCTaGAAAACTGCTGTGGTAGCGGAAATGAAATCTGAA | + |
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Preference number: 6 (lower is better) Translates to: NILSTSWYMAQL*KTAVVAEMKSE Trigger: TTCAGATTTCATTTCCGCTACCACAGCAGTTTTCCAGAGCTGTGCCATATACCATGAGGTACTCAAGATGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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| CDS CCA 72 bp | AGTTTAGTAGTACGGTCTGCTTTCGCTTGTCTTGATTaGTGTGAAAGCATCAATGGTTTTATCCACCACTCG | + |
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Preference number: 6 (lower is better) Translates to: SLVVRSAFACLD*CESINGFIHHS Trigger: CGAGTGGTGGATAAAACCATTGATGCTTTCACACCAATCAAGACAAGCGAAAGCAGACCGTACTACTAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504339.1 |
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