Pregenerated sensors for LINC02234 (Homo sapiens)
Ensembl gene IDs: ENSG00000248202Ensembl transcript IDs: ENST00000502324.2, ENST00000513288.1, ENST00000666358.1, ENST00000669006.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGCTGGCTGTATGTAAGTCAGCCTGTCTATGCTGAGAGCATCCTTTaGCAACCTGCACAAGCACGGTTTGGTGAGCGTTGGACAATCGCT | + |
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Preference number: 5 (lower is better) Translates to: GWLYVSQPVYAESIL*QPAQARFGERWTIA Trigger: AGCGATTGTCCAACGCTCACCAAACCGTGCTTGTGCAGGTTGGCAAAGGATGCTCTCAGCATAGACAGGCTGACTTACATACAGCCAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000666358.1 ENST00000669006.1 |
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| CDS CCA 90 bp | GAGAGCATCCTTTGCCAACCTGCACAAGCACGGTTTGGTGAGCGTTaGACAATCGCTTGTCAGGCATTACTTTCAGTGTGTAATGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: ESILCQPAQARFGER*TIACQALLSVCNEA Trigger: TGCCTCATTACACACTGAAAGTAATGCCTGACAAGCGATTGTCCAACGCTCACCAAACCGTGCTTGTGCAGGTTGGCAAAGGATGCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000666358.1 ENST00000669006.1 |
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| CDS CCA 90 bp | CTTCCTCAAGGCCCTCAGGAACCAATCCTGCTGACATCTTGGTCTTaGATGGTTAGCCTCCAGAGCACATTAAAAACATTTCATCTTTTG | + |
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Preference number: 5 (lower is better) Translates to: LPQGPQEPILLTSWS*MVSLQSTLKTFHLL Trigger: CAAAAGATGAAATGTTTTTAATGTGCTCTGGAGGCTAACCATCCAAGACCAAGATGTCAGCAGGATTGGTTCCTGAGGGCCTTGAGGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS CCA 90 bp | CAGATTCTTCCTCAAGGCCCTCAGGAACCAATCCTGCTGACATCTTaGTCTTGGATGGTTAGCCTCCAGAGCACATTAAAAACATTTCAT | + |
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Preference number: 5 (lower is better) Translates to: QILPQGPQEPILLTS*SWMVSLQSTLKTFH Trigger: ATGAAATGTTTTTAATGTGCTCTGGAGGCTAACCATCCAAGACCAAGATGTCAGCAGGATTGGTTCCTGAGGGCCTTGAGGAAGAATCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS TCA 72 bp | GGTAGGCTGGCTGTATGTAAGTCAGCCTGTCTATGCTaGGAGCATCCTTTGCCAACCTGCACAAGCACGGTT | + |
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Preference number: 6 (lower is better) Translates to: GRLAVCKSACLC*EHPLPTCTSTV Trigger: AACCGTGCTTGTGCAGGTTGGCAAAGGATGCTCTCAGCATAGACAGGCTGACTTACATACAGCCAGCCTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000666358.1 ENST00000669006.1 |
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| CDS TCA 72 bp | GAGCATCCTTTGCCAACCTGCACAAGCACGGTTTGGTaGGCGTTGGACAATCGCTTGTCAGGCATTACTTTC | + |
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Preference number: 6 (lower is better) Translates to: EHPLPTCTSTVW*ALDNRLSGITF Trigger: GAAAGTAATGCCTGACAAGCGATTGTCCAACGCTCACCAAACCGTGCTTGTGCAGGTTGGCAAAGGATGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000666358.1 ENST00000669006.1 |
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| CDS GCA 72 bp | TATGTAAGTCAGCCTGTCTATGCTGAGAGCATCCTTTaGCAACCTGCACAAGCACGGTTTGGTGAGCGTTGG | + |
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Preference number: 6 (lower is better) Translates to: YVSQPVYAESIL*QPAQARFGERW Trigger: CCAACGCTCACCAAACCGTGCTTGTGCAGGTTGGCAAAGGATGCTCTCAGCATAGACAGGCTGACTTACATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000666358.1 ENST00000669006.1 |
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| CDS CCA 72 bp | CCTCAAGGCCCTCAGGAACCAATCCTGCTGACATCTTaGTCTTGGATGGTTAGCCTCCAGAGCAACCAAAAA | + |
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Preference number: 6 (lower is better) Translates to: PQGPQEPILLTS*SWMVSLQSNQK Trigger: TTTTTGGTTGCTCTGGAGGCTAACCATCCAAGACCAAGATGTCAGCAGGATTGGTTCCTGAGGGCCTTGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000502324.2 |
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| CDS CAA 90 bp | CTGTCTATGCTGAGAGCATCCTTTGCCAACCTGCACAAGCACGGTTaGGTGAGCGTTGGACAATCGCTTGTCAGGCATTACTTTCAGTGT | + |
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Preference number: 6 (lower is better) Translates to: LSMLRASFANLHKHG*VSVGQSLVRHYFQC Trigger: ACACTGAAAGTAATGCCTGACAAGCGATTGTCCAACGCTCACCAAACCGTGCTTGTGCAGGTTGGCAAAGGATGCTCTCAGCATAGACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000666358.1 ENST00000669006.1 |
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| CDS CCA 72 bp | GAGAATATGGCCAATGGCAAGCCAAAGGGAAAGTCCTaGAACAGATTCTTCCTCAAGGCCCTCAGGAACCAA | + |
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Preference number: 6 (lower is better) Translates to: ENMANGKPKGKS*NRFFLKALRNQ Trigger: TTGGTTCCTGAGGGCCTTGAGGAAGAATCTGTTCCAGGACTTTCCCTTTGGCTTGCCATTGGCCATATTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000502324.2 ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS CCA 72 bp | CCTCAAGGCCCTCAGGAACCAATCCTGCTGACATCTTaGTCTTGGATGGTTAGCCTCCAGAGCACATTAAAA | + |
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Preference number: 6 (lower is better) Translates to: PQGPQEPILLTS*SWMVSLQSTLK Trigger: TTTTAATGTGCTCTGGAGGCTAACCATCCAAGACCAAGATGTCAGCAGGATTGGTTCCTGAGGGCCTTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS CCA 72 bp | CTTTGCCAACCTGCACAAGCACGGTTTGGTGAGCGTTaGACAATCGCTTGTCAGGCATTACTTTCAGTGTGT | + |
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Preference number: 6 (lower is better) Translates to: LCQPAQARFGER*TIACQALLSVC Trigger: ACACACTGAAAGTAATGCCTGACAAGCGATTGTCCAACGCTCACCAAACCGTGCTTGTGCAGGTTGGCAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000666358.1 ENST00000669006.1 |
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| CDS CCA 72 bp | GGCCCTCAGGAACCAATCCTGCTGACATCTTGGTCTTaGATGGTTAGCCTCCAGAGCACATTAAAAACATTT | + |
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Preference number: 6 (lower is better) Translates to: GPQEPILLTSWS*MVSLQSTLKTF Trigger: AAATGTTTTTAATGTGCTCTGGAGGCTAACCATCCAAGACCAAGATGTCAGCAGGATTGGTTCCTGAGGGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS CAA 90 bp | GGGCCTAGAAGAAGAAGATTTCGCTATGTATCTGGGTGTTGTGGGTaGGTTGTATTCTGTCTCCCTGCCCCTCACAAAATTCATATATTG | + |
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Preference number: 6 (lower is better) Translates to: GPRRRRFRYVSGCCG*VVFCLPAPHKIHIL Trigger: CAATATATGAATTTTGTGAGGGGCAGGGAGACAGAATACAACCAACCCACAACACCCAGATACATAGCGAAATCTTCTTCTTCTAGGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000502324.2 ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS CAA 72 bp | GAAGATTTCGCTATGTATCTGGGTGTTGTGGGTTGGTaGTATTCTGTCTCCCTGCCCCTCACAAAATTCATA | + |
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Preference number: 6 (lower is better) Translates to: EDFAMYLGVVGW*YSVSLPLTKFI Trigger: TATGAATTTTGTGAGGGGCAGGGAGACAGAATACAACCAACCCACAACACCCAGATACATAGCGAAATCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000502324.2 ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS CAA 72 bp | AGAAGAAGATTTCGCTATGTATCTGGGTGTTGTGGGTaGGTTGTATTCTGTCTCCCTGCCCCTCACAAAATT | + |
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Preference number: 6 (lower is better) Translates to: RRRFRYVSGCCG*VVFCLPAPHKI Trigger: AATTTTGTGAGGGGCAGGGAGACAGAATACAACCAACCCACAACACCCAGATACATAGCGAAATCTTCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000502324.2 ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS GCA 72 bp | ATCTGGGTGTTGTGGGTTGGTTGTATTCTGTCTCCCTaGCCCTCACAAAATTCATATATTGACGCATTAATC | + |
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Preference number: 6 (lower is better) Translates to: IWVLWVGCILSP*PSQNSYIDALI Trigger: GATTAATGCGTCAATATATGAATTTTGTGAGGGGCAGGGAGACAGAATACAACCAACCCACAACACCCAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000502324.2 ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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| CDS TCA 72 bp | GATAGAAAAAGAGGGAATCCTCCCAAACTCATTTTATaGGGCCAGCATCATCCTGATATCAAAGCCACATTA | + |
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Preference number: 6 (lower is better) Translates to: DRKRGNPPKLIL*GQHHPDIKATL Trigger: TAATGTGGCTTTGATATCAGGATGATGCTGGCCTCATAAAATGAGTTTGGGAGGATTCCCTCTTTTTCTATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000502324.2 |
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| CDS CAA 72 bp | CTCTTTATGCTGTTGACTTGCAGGCATCAGTGTCTATaGGTGGATATCAATTTTAGTCCATATGGTCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: LFMLLTCRHQCL*VDINFSPYGQR Trigger: TCTTTGACCATATGGACTAAAATTGATATCCACCAATAGACACTGATGCCTGCAAGTCAACAGCATAAAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000502324.2 ENST00000513288.1 ENST00000666358.1 ENST00000669006.1 |
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