Pregenerated sensors for LINC02230 (Homo sapiens)
Ensembl gene IDs: ENSG00000251543Ensembl transcript IDs: ENST00000511174.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGCCAAGCAGATCGCGGGCTGCTGAGACTGGGTGCCCCCTCCGCCTaGCTGGGAGCCCTGGGGATCGTTGCATGTTATTGCTCCCTGATC | + |
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Preference number: 5 (lower is better) Translates to: GQADRGLLRLGAPSA*LGALGIVACYCSLI Trigger: GATCAGGGAGCAATAACATGCAACGATCCCCAGGGCTCCCAGGCAGGCGGAGGGGGCACCCAGTCTCAGCAGCCCGCGATCTGCTTGGCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS GCA 90 bp | GAGACTGGGTGCCCCCTCCGCCTGCCTGGGAGCCCTGGGGATCGTTaGATGTTATTGCTCCCTGATCAGAACAATTTGTGCCGCTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: ETGCPLRLPGSPGDR*MLLLPDQNNLCRFH Trigger: ATGGAAGCGGCACAAATTGTTCTGATCAGGGAGCAATAACATGCAACGATCCCCAGGGCTCCCAGGCAGGCGGAGGGGGCACCCAGTCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS GCA 90 bp | GCCCCCTCCGCCTGCCTGGGAGCCCTGGGGATCGTTGCATGTTATTaGTCCCTGATCAGAACAATTTGTGCCGCTTCCATCCTGCAGTTA | + |
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Preference number: 5 (lower is better) Translates to: APSACLGALGIVACY*SLIRTICAASILQL Trigger: TAACTGCAGGATGGAAGCGGCACAAATTGTTCTGATCAGGGAGCAATAACATGCAACGATCCCCAGGGCTCCCAGGCAGGCGGAGGGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS TCA 72 bp | ATGCAGCTCGCAGGGGCCAAGCAGATCGCGGGCTGCTaGGACTGGGTGCCCCCTCCGCCTGCCTGGGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: MQLAGAKQIAGC*DWVPPPPAWEP Trigger: GGGCTCCCAGGCAGGCGGAGGGGGCACCCAGTCTCAGCAGCCCGCGATCTGCTTGGCCCCTGCGAGCTGCAT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS CAA 90 bp | TGCCCCCTCCGCCTGCCTGGGAGCCCTGGGGATCGTTGCATGTTATaGCTCCCTGATCAGAACAATTTGTGCCGCTTCCATCCTGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: CPLRLPGSPGDRCML*LPDQNNLCRFHPAV Trigger: AACTGCAGGATGGAAGCGGCACAAATTGTTCTGATCAGGGAGCAATAACATGCAACGATCCCCAGGGCTCCCAGGCAGGCGGAGGGGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS GCA 72 bp | TGCCCCCTCCGCCTGCCTGGGAGCCCTGGGGATCGTTaGATGTTATTGCTCCCTGATCAGAACAATTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: CPLRLPGSPGDR*MLLLPDQNNLC Trigger: GCACAAATTGTTCTGATCAGGGAGCAATAACATGCAACGATCCCCAGGGCTCCCAGGCAGGCGGAGGGGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS GCA 72 bp | GCCTGCCTGGGAGCCCTGGGGATCGTTGCATGTTATTaGTCCCTGATCAGAACAATTTGTGCCGCTTCCATC | + |
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Preference number: 6 (lower is better) Translates to: ACLGALGIVACY*SLIRTICAASI Trigger: GATGGAAGCGGCACAAATTGTTCTGATCAGGGAGCAATAACATGCAACGATCCCCAGGGCTCCCAGGCAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS CAA 72 bp | CGCCTGCCTGGGAGCCCTGGGGATCGTTGCATGTTATaGCTCCCTGATCAGAACAATTTGTGCCGCTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: RLPGSPGDRCML*LPDQNNLCRFH Trigger: ATGGAAGCGGCACAAATTGTTCTGATCAGGGAGCAATAACATGCAACGATCCCCAGGGCTCCCAGGCAGGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS TCA 72 bp | TGGGAGCCCTGGGGATCGTTGCATGTTATTGCTCCCTaGTCAGAACAATTTGTGCCGCTTCCATCCTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: WEPWGSLHVIAP*SEQFVPLPSCS Trigger: ACTGCAGGATGGAAGCGGCACAAATTGTTCTGATCAGGGAGCAATAACATGCAACGATCCCCAGGGCTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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| CDS CCA 72 bp | GATTTCATCCTAAATGTCTCGACAGCAAATAGTTGGTaGTTTAATAAAGGGCCTTTGAAAGGAGGCTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: DFILNVSTANSW*FNKGPLKGGWS Trigger: GCTCCAGCCTCCTTTCAAAGGCCCTTTATTAAACCACCAACTATTTGCTGTCGAGACATTTAGGATGAAATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511174.1 |
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