Pregenerated sensors for LINC02216 (Homo sapiens)
Ensembl gene IDs: ENSG00000249551Ensembl transcript IDs: ENST00000513366.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCCAGCGCTGCTGCCCGTCTCTTGAGTTTTTCCTCCAAGATGGTTaGTGTAGCCTGAACTGCCACATTCTACCTTCTGGTGTGTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: SQRCCPSLEFFLQDG*CSLNCHILPSGVWL Trigger: AAGCCACACACCAGAAGGTAGAATGTGGCAGTTCAGGCTACAGCAACCATCTTGGAGGAAAAACTCAAGAGACGGGCAGCAGCGCTGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS CCA 90 bp | GATGGTTGCTGTAGCCTGAACTGCCACATTCTACCTTCTGGTGTGTaGCTTGTTCCATTATATGATTCAGCTGGGCCGGGCGCAGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: DGCCSLNCHILPSGV*LVPLYDSAGPGAVA Trigger: AGCCACTGCGCCCGGCCCAGCTGAATCATATAATGGAACAAGCCACACACCAGAAGGTAGAATGTGGCAGTTCAGGCTACAGCAACCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS GCA 90 bp | GTTGGAATTAGTTTCGTGATCCAGACACTTCAGAGCCAGCGCTGCTaGCCGTCTCTTGAGTTTTTCCTCCAAGATGGTTGCTGTAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: VGISFVIQTLQSQRC*PSLEFFLQDGCCSL Trigger: CAGGCTACAGCAACCATCTTGGAGGAAAAACTCAAGAGACGGGCAGCAGCGCTGGCTCTGAAGTGTCTGGATCACGAAACTAATTCCAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS GCA 90 bp | GTTGTTGGAATTAGTTTCGTGATCCAGACACTTCAGAGCCAGCGCTaGTGCCCGTCTCTTGAGTTTTTCCTCCAAGATGGTTGCTGTAGC | + |
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Preference number: 5 (lower is better) Translates to: VVGISFVIQTLQSQR*CPSLEFFLQDGCCS Trigger: GCTACAGCAACCATCTTGGAGGAAAAACTCAAGAGACGGGCAGCAGCGCTGGCTCTGAAGTGTCTGGATCACGAAACTAATTCCAACAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS TCA 90 bp | GCTGCCCGTCTCTTGAGTTTTTCCTCCAAGATGGTTGCTGTAGCCTaGACTGCCACATTCTACCTTCTGGTGTGTGGCTTGTTCCATTAT | + |
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Preference number: 5 (lower is better) Translates to: AARLLSFSSKMVAVA*TATFYLLVCGLFHY Trigger: ATAATGGAACAAGCCACACACCAGAAGGTAGAATGTGGCAGTTCAGGCTACAGCAACCATCTTGGAGGAAAAACTCAAGAGACGGGCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS GCA 72 bp | AGTTTCGTGATCCAGACACTTCAGAGCCAGCGCTGCTaGCCGTCTCTTGAGTTTTTCCTCCAAGATGGTTGC | + |
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Preference number: 6 (lower is better) Translates to: SFVIQTLQSQRC*PSLEFFLQDGC Trigger: GCAACCATCTTGGAGGAAAAACTCAAGAGACGGGCAGCAGCGCTGGCTCTGAAGTGTCTGGATCACGAAACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS TCA 72 bp | GACGGGTCTTCACTTATACGATGGTGGAATGCAGGCTaGAAGCTGGGGGCCAATGTGAGTTACGATTCTGTT | + |
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Preference number: 6 (lower is better) Translates to: DGSSLIRWWNAG*KLGANVSYDSV Trigger: AACAGAATCGTAACTCACATTGGCCCCCAGCTTTCAGCCTGCATTCCACCATCGTATAAGTGAAGACCCGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS GCA 72 bp | ATTAGTTTCGTGATCCAGACACTTCAGAGCCAGCGCTaGTGCCCGTCTCTTGAGTTTTTCCTCCAAGATGGT | + |
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Preference number: 6 (lower is better) Translates to: ISFVIQTLQSQR*CPSLEFFLQDG Trigger: ACCATCTTGGAGGAAAAACTCAAGAGACGGGCAGCAGCGCTGGCTCTGAAGTGTCTGGATCACGAAACTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS TCA 72 bp | GAGGTCAGGAGATGGAGACCAGACTGGCTAACACAGTaGAACCTTGTCTCTACTGACGGGTCTTCACTTATA | + |
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Preference number: 6 (lower is better) Translates to: EVRRWRPDWLTQ*NLVSTDGSSLI Trigger: TATAAGTGAAGACCCGTCAGTAGAGACAAGGTTTCACTGTGTTAGCCAGTCTGGTCTCCATCTCCTGACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS TCA 72 bp | CTCTTGAGTTTTTCCTCCAAGATGGTTGCTGTAGCCTaGACTGCCACATTCTACCTTCTGGTGTGTGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LLSFSSKMVAVA*TATFYLLVCGL Trigger: CAAGCCACACACCAGAAGGTAGAATGTGGCAGTTCAGGCTACAGCAACCATCTTGGAGGAAAAACTCAAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS TCA 72 bp | TCCAAGCGACACGAGTCAGATAAAGTGAGTGTGTGCTaGGTTAGCTCCCAAAAGGGAACAATAATGAGATGT | + |
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Preference number: 6 (lower is better) Translates to: SKRHESDKVSVC*VSSQKGTIMRC Trigger: ACATCTCATTATTGTTCCCTTTTGGGAGCTAACTCAGCACACACTCACTTTATCTGACTCGTGTCGCTTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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| CDS TCA 72 bp | TTTTCACTTATCCTCCTTGGGTGTCCATTCTGTTTTTaGAATTGTGTCCTTGAGTCTTTGACGCCTTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: FSLILLGCPFCF*NCVLESLTPCS Trigger: AGAGCAAGGCGTCAAAGACTCAAGGACACAATTTCAAAAACAGAATGGACACCCAAGGAGGATAAGTGAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000513366.1 |
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