Pregenerated sensors for LINC02214 (Homo sapiens)
Ensembl gene IDs: ENSG00000251311Ensembl transcript IDs: ENST00000504419.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTTGAGAGAGGAACTGTAGTTGGCGACTTTGTTTGTTCAAAGACATaGAATCAGGCACTCAAAAGTGCCCTCGATAATGCTTCTGGGGAT | + |
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Preference number: 5 (lower is better) Translates to: LERGTVVGDFVCSKT*NQALKSALDNASGD Trigger: ATCCCCAGAAGCATTATCGAGGGCACTTTTGAGTGCCTGATTCCATGTCTTTGAACAAACAAAGTCGCCAACTACAGTTCCTCTCTCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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| CDS TCA 90 bp | AATTGGCCATGCTTTATAGCCCAAATACTGGCTGGCAGTCTCATTTaGGGAATTTGTTTGTCTTGCTGTCAAGCTTGCGTTCTGAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: NWPCFIAQILAGSLI*GICLSCCQACVLSS Trigger: TGAGCTCAGAACGCAAGCTTGACAGCAAGACAAACAAATTCCTCAAATGAGACTGCCAGCCAGTATTTGGGCTATAAAGCATGGCCAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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| CDS CAA 90 bp | AGCCCAAATACTGGCTGGCAGTCTCATTTGAGGAATTTGTTTGTCTaGCTGTCAAGCTTGCGTTCTGAGCTCACTCTGTCTCTGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SPNTGWQSHLRNLFV*LSSLRSELTLSLGS Trigger: GGAGCCCAGAGACAGAGTGAGCTCAGAACGCAAGCTTGACAGCAAGACAAACAAATTCCTCAAATGAGACTGCCAGCCAGTATTTGGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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| CDS CAA 72 bp | ACTGGCTGGCAGTCTCATTTGAGGAATTTGTTTGTCTaGCTGTCAAGCTTGCGTTCTGAGCTCACTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: TGWQSHLRNLFV*LSSLRSELTLS Trigger: AGACAGAGTGAGCTCAGAACGCAAGCTTGACAGCAAGACAAACAAATTCCTCAAATGAGACTGCCAGCCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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| CDS CAA 90 bp | ATGCTTTATAGCCCAAATACTGGCTGGCAGTCTCATTTGAGGAATTaGTTTGTCTTGCTGTCAAGCTTGCGTTCTGAGCTCACTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: MLYSPNTGWQSHLRN*FVLLSSLRSELTLS Trigger: AGACAGAGTGAGCTCAGAACGCAAGCTTGACAGCAAGACAAACAAATTCCTCAAATGAGACTGCCAGCCAGTATTTGGGCTATAAAGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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| CDS CAA 90 bp | AAATTGGCCATGCTTTATAGCCCAAATACTGGCTGGCAGTCTCATTaGAGGAATTTGTTTGTCTTGCTGTCAAGCTTGCGTTCTGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: KLAMLYSPNTGWQSH*RNLFVLLSSLRSEL Trigger: GAGCTCAGAACGCAAGCTTGACAGCAAGACAAACAAATTCCTCAAATGAGACTGCCAGCCAGTATTTGGGCTATAAAGCATGGCCAATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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| CDS TCA 72 bp | TGCTTTATAGCCCAAATACTGGCTGGCAGTCTCATTTaGGGAATTTGTTTGTCTTGCTGTCAAGCTTGCGTT | + |
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Preference number: 6 (lower is better) Translates to: CFIAQILAGSLI*GICLSCCQACV Trigger: AACGCAAGCTTGACAGCAAGACAAACAAATTCCTCAAATGAGACTGCCAGCCAGTATTTGGGCTATAAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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| CDS CCA 72 bp | AGCAAATTGGCCATGCTTTATAGCCCAAATACTGGCTaGCAGTCTCATTTGAGGAATTTGTTTGTCTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: SKLAMLYSPNTG*QSHLRNLFVLL Trigger: CAGCAAGACAAACAAATTCCTCAAATGAGACTGCCAGCCAGTATTTGGGCTATAAAGCATGGCCAATTTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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| CDS CAA 72 bp | ATGCTTTATAGCCCAAATACTGGCTGGCAGTCTCATTaGAGGAATTTGTTTGTCTTGCTGTCAAGCTTGCGT | + |
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Preference number: 6 (lower is better) Translates to: MLYSPNTGWQSH*RNLFVLLSSLR Trigger: ACGCAAGCTTGACAGCAAGACAAACAAATTCCTCAAATGAGACTGCCAGCCAGTATTTGGGCTATAAAGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504419.1 |
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