Pregenerated sensors for LINC02205 (Homo sapiens)
Ensembl gene IDs: ENSG00000259473Ensembl transcript IDs: ENST00000559752.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGAGCGGGCTCCATTTCCACCGTGCTCCCAGCCTGCTGGAGACCTTaGTTGGGGGCCTTTGCTCCTCTGGGCCTCAGTTGCTTCTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: GAGSISTVLPACWRP*LGAFAPLGLSCFCF Trigger: AAAGCAGAAGCAACTGAGGCCCAGAGGAGCAAAGGCCCCCAAGCAAGGTCTCCAGCAGGCTGGGAGCACGGTGGAAATGGAGCCCGCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS GCA 90 bp | TTAAACAGGCAGTGGAAGACAGGGGAGCGGGCTCCATTTCCACCGTaGTCCCAGCCTGCTGGAGACCTTGCTTGGGGGCCTTTGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: LNRQWKTGERAPFPP*SQPAGDLAWGPLLL Trigger: GAGGAGCAAAGGCCCCCAAGCAAGGTCTCCAGCAGGCTGGGAGCACGGTGGAAATGGAGCCCGCTCCCCTGTCTTCCACTGCCTGTTTAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS CCA 90 bp | CGGGCTCCATTTCCACCGTGCTCCCAGCCTGCTGGAGACCTTGCTTaGGGGCCTTTGCTCCTCTGGGCCTCAGTTGCTTCTGCTTTTAGG | + |
|
Preference number: 5 (lower is better) Translates to: RAPFPPCSQPAGDLA*GPLLLWASVASAFR Trigger: CCTAAAAGCAGAAGCAACTGAGGCCCAGAGGAGCAAAGGCCCCCAAGCAAGGTCTCCAGCAGGCTGGGAGCACGGTGGAAATGGAGCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS CCA 90 bp | AGAAGAGAAAGGTTGCATTTATCTGTGGGCGGGGAAGACAAGCCATaGCGGGTATCCACAGCAGAGCTCACCCCCGAGACCAGCCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: RRERLHLSVGGEDKP*RVSTAELTPETSPG Trigger: CCCTGGGCTGGTCTCGGGGGTGAGCTCTGCTGTGGATACCCGCCATGGCTTGTCTTCCCCGCCCACAGATAAATGCAACCTTTCTCTTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS CCA 72 bp | GGAGCGGGCTCCATTTCCACCGTGCTCCCAGCCTGCTaGAGACCTTGCTTGGGGGCCTTTGCTCCTCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: GAGSISTVLPAC*RPCLGAFAPLG Trigger: GCCCAGAGGAGCAAAGGCCCCCAAGCAAGGTCTCCAGCAGGCTGGGAGCACGGTGGAAATGGAGCCCGCTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS GCA 72 bp | CAGTGGAAGACAGGGGAGCGGGCTCCATTTCCACCGTaGTCCCAGCCTGCTGGAGACCTTGCTTGGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: QWKTGERAPFPP*SQPAGDLAWGP Trigger: AGGCCCCCAAGCAAGGTCTCCAGCAGGCTGGGAGCACGGTGGAAATGGAGCCCGCTCCCCTGTCTTCCACTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS GCA 72 bp | GAGCTCACCCCCGAGACCAGCCCAGGGCCTCGCGGCTaGTCTTCTCTTAAACAGGCAGTGGAAGACAGGGGA | + |
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Preference number: 6 (lower is better) Translates to: ELTPETSPGPRG*SSLKQAVEDRG Trigger: TCCCCTGTCTTCCACTGCCTGTTTAAGAGAAGAGCAGCCGCGAGGCCCTGGGCTGGTCTCGGGGGTGAGCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS GCA 72 bp | TCCATTTCCACCGTGCTCCCAGCCTGCTGGAGACCTTaGTTGGGGGCCTTTGCTCCTCTGGGCCTCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: SISTVLPACWRP*LGAFAPLGLSC Trigger: GCAACTGAGGCCCAGAGGAGCAAAGGCCCCCAAGCAAGGTCTCCAGCAGGCTGGGAGCACGGTGGAAATGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS CCA 72 bp | TTTCCACCGTGCTCCCAGCCTGCTGGAGACCTTGCTTaGGGGCCTTTGCTCCTCTGGGCCTCAGTTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: FPPCSQPAGDLA*GPLLLWASVAS Trigger: AGAAGCAACTGAGGCCCAGAGGAGCAAAGGCCCCCAAGCAAGGTCTCCAGCAGGCTGGGAGCACGGTGGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS CCA 72 bp | AGGTTGCATTTATCTGTGGGCGGGGAAGACAAGCCATaGCGGGTATCCACAGCAGAGCTCACCCCCGAGACC | + |
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Preference number: 6 (lower is better) Translates to: RLHLSVGGEDKP*RVSTAELTPET Trigger: GGTCTCGGGGGTGAGCTCTGCTGTGGATACCCGCCATGGCTTGTCTTCCCCGCCCACAGATAAATGCAACCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS CAA 72 bp | TGCTCCCAGCCTGCTGGAGACCTTGCTTGGGGGCCTTaGCTCCTCTGGGCCTCAGTTGCTTCTGCTTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: CSQPAGDLAWGP*LLWASVASAFR Trigger: CCTAAAAGCAGAAGCAACTGAGGCCCAGAGGAGCAAAGGCCCCCAAGCAAGGTCTCCAGCAGGCTGGGAGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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| CDS CCA 72 bp | CCTGCTGGAGACCTTGCTTGGGGGCCTTTGCTCCTCTaGGCCTCAGTTGCTTCTGCTTTTAGGTGTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: PAGDLAWGPLLL*ASVASAFRCLA Trigger: AGCAAGACACCTAAAAGCAGAAGCAACTGAGGCCCAGAGGAGCAAAGGCCCCCAAGCAAGGTCTCCAGCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559752.1 |
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