Pregenerated sensors for LINC02203 (Homo sapiens)
Ensembl gene IDs: ENSG00000280555, ENSG00000280709, ENSG00000284988Ensembl transcript IDs: ENST00000625989.2, ENST00000626174.2, ENST00000628444.1, ENST00000629423.1, ENST00000643304.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTCTCCTCCATTGCCTACAATGGTACCTGGCAAATGGGAGGTACCAGTGAAAAAAGACCGAAAGACCCTTaGAGTCACATAAAACTTAAC | + |
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Preference number: 4 (lower is better) Translates to: LSSIAYNGTWQMGGTSEKRPKDP*SHIKLN Trigger: GTTAAGTTTTATGTGACTGCAAGGGTCTTTCGGTCT...TTTTTCACTGGTACCTCCCATTTGCCAGGTACCATTGTAGGCAATGGAGGAGAG 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000628444.1 |
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| CDS-3UTR CCA 90 bp | CTCTCCTCCATTGCCTACAATGGTACCTGGCAAATGGGAGGTACCAGTGAAAAAATACTTCAACCACTCTaGGGTTTCCTTTATATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LSSIAYNGTWQMGGTSEKILQPL*GFLYIL Trigger: AAGAATATAAAGGAAACCCCAGAGTGGTTGAAGTAT...TTTTTCACTGGTACCTCCCATTTGCCAGGTACCATTGTAGGCAATGGAGGAGAG 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000628444.1 |
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| CDS-3UTR CCA 90 bp | TTAACCCTTAAATTTCTCACACTTACTCATTATACTTCAACCACTCTGGGGTTTATGGTACCTGGCAAATaGGAGGTACCAGTGAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: LTLKFLTLTHYTSTTLGFMVPGK*EVPVKN Trigger: GTTTTTCACTGGTACCTCCCATTTGCCAGGTACCAT...AAACCCCAGAGTGGTTGAAGTATAATGAGTAAGTGTGAGAAATTTAAGGGTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000628444.1 |
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| CDS TCA 72 bp | CTGTGGCACAGCAAACTGGATCTGGTGCTCATCCTCTaGGTCACAGTCCAGGGCTCTGTACTCTCTACTGTC | + |
|
Preference number: 6 (lower is better) Translates to: LWHSKLDLVLIL*VTVQGSVLSTV Trigger: GACAGTAGAGAGTACAGAGCCCTGGACTGTGACTCAGAGGATGAGCACCAGATCCAGTTTGCTGTGCCACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000625989.2 ENST00000626174.2 |
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| CDS GCA 72 bp | TCTTCAGGACACTGTGGCACAGCAAACTGGATCTGGTaGTCATCCTCTGAGTCACAGTCCAGGGCTCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: SSGHCGTANWIW*SSSESQSRALY Trigger: GTACAGAGCCCTGGACTGTGACTCAGAGGATGAGCACCAGATCCAGTTTGCTGTGCCACAGTGTCCTGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000625989.2 ENST00000626174.2 |
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| CDS CCA 72 bp | AAATCTTCAGGACACTGTGGCACAGCAAACTGGATCTaGTGCTCATCCTCTGAGTCACAGTCCAGGGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: KSSGHCGTANWI*CSSSESQSRAL Trigger: CAGAGCCCTGGACTGTGACTCAGAGGATGAGCACCAGATCCAGTTTGCTGTGCCACAGTGTCCTGAAGATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000625989.2 ENST00000626174.2 |
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| CDS CCA 72 bp | CTCTCATTATGCATAACTCTCCTCCATTGCCTACAATaGTACCTGGCAAATGGGAGGTACTCAGTGAAAAAC | + |
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Preference number: 6 (lower is better) Translates to: LSLCITLLHCLQ*YLANGRYSVKN Trigger: GTTTTTCACTGAGTACCTCCCATTTGCCAGGTACCATTGTAGGCAATGGAGGAGAGTTATGCATAATGAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000629423.1 |
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| CDS CCA 72 bp | AAAGGTACATTAAGGCCTAACATGATTCAATGGAGGTaGCGCAGGGAACTCTGTCTCACTCTTCATACCATA | + |
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Preference number: 6 (lower is better) Translates to: KGTLRPNMIQWR*RRELCLTLHTI Trigger: TATGGTATGAAGAGTGAGACAGAGTTCCCTGCGCCACCTCCATTGAATCATGTTAGGCCTTAATGTACCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643304.1 |
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| CDS CAA 90 bp | AATGCAAGAAGGGAATGTGGTTTGGCAAAGTTCATTAGATCAATTTaGGAGTTGAGTTTGAGGTGCCCCCAGCAATTGATGAGTTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: NARRECGLAKFIRSI*ELSLRCPQQLMSSR Trigger: CCTTGAACTCATCAATTGCTGGGGGCACCTCAAACTCAACTCCAAAATTGATCTAATGAACTTTGCCAAACCACATTCCCTTCTTGCATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000625989.2 ENST00000643304.1 |
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| CDS TCA 72 bp | CAGATGCTACCGTTAGCATCTCTTCCAAACTTTTGTTaGAATCTCTTCTCTGCATCTAACTCCTGTCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: QMLPLASLPNFC*NLFSASNSCPV Trigger: AACAGGACAGGAGTTAGATGCAGAGAAGAGATTTCAACAAAAGTTTGGAAGAGATGCTAACGGTAGCATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000626174.2 ENST00000629423.1 |
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| CDS CAA 72 bp | TGTGGTTTGGCAAAGTTCATTAGATCAATTTTGGAGTaGAGTTTGAGGTGCCCCCAGCAATTGATGAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: CGLAKFIRSILE*SLRCPQQLMSS Trigger: TGAACTCATCAATTGCTGGGGGCACCTCAAACTCAACTCCAAAATTGATCTAATGAACTTTGCCAAACCACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000625989.2 ENST00000643304.1 |
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| CDS TCA 72 bp | CATATGCTACCGTTAGCATCTTTTCCAAACTTTTGTTaGAATCTCTTCTCTGCATCTAACTCCTGTCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: HMLPLASFPNFC*NLFSASNSCPV Trigger: AACAGGACAGGAGTTAGATGCAGAGAAGAGATTTCAACAAAAGTTTGGAAAAGATGCTAACGGTAGCATATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000625989.2 ENST00000628444.1 |
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