Pregenerated sensors for LINC02201 (Homo sapiens)
Ensembl gene IDs: ENSG00000251538Ensembl transcript IDs: ENST00000508992.1, ENST00000511194.5, ENST00000514657.2, ENST00000649085.1, ENST00000656860.1, ENST00000659891.1, ENST00000669389.1
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCAATCTGTGCCTCTCCAGCAGTCTGTGCCACCATTGCTGCCAGGTaGCATCAGCTCCCGCTCAGCATCCTCCTCCTGTCTGCCATGAGG | + |
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Preference number: 5 (lower is better) Translates to: PICASPAVCATIAAR*HQLPLSILLLSAMR Trigger: CCTCATGGCAGACAGGAGGAGGATGCTGAGCGGGAGCTGATGCCACCTGGCAGCAATGGTGGCACAGACTGCTGGAGAGGCACAGATTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511194.5 ENST00000649085.1 |
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| CDS TCA 90 bp | TCCCTTATGTGCCACTGCTTCATAGCTGCAGTAACTGAAGGGCCCTaGAGGTGCATTCATGCAAAGTTCGCTAGCGATGCATGTGATGTC | + |
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Preference number: 5 (lower is better) Translates to: SLMCHCFIAAVTEGP*RCIHAKFASDACDV Trigger: GACATCACATGCATCGCTAGCGAACTTTGCATGAATGCACCTTCAGGGCCCTTCAGTTACTGCAGCTATGAAGCAGTGGCACATAAGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511194.5 |
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| CDS TCA 90 bp | ACTTCCCTTATGTGCCACTGCATAGCTGCAGTAACTGAAGGGCCCTaGAGGTGCATTCATGCAAAGTTCGCTAGCGATGCATGTGATGTC | + |
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Preference number: 5 (lower is better) Translates to: TSLMCHCIAAVTEGP*RCIHAKFASDACDV Trigger: GACATCACATGCATCGCTAGCGAACTTTGCATGAATGCACCTTCAGGGCCCTTCAGTTACTGCAGCTATGCAGTGGCACATAAGGGAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649085.1 |
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| CDS TCA 90 bp | ACAGAAATTTTGATTCATTTACACAGCTATTGCCCCAGGTATACATaGGCTCCCAGGAGGACTGGGAAGGTCAGGTTCTACCACCATCCC | + |
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Preference number: 5 (lower is better) Translates to: TEILIHLHSYCPRYT*APRRTGKVRFYHHP Trigger: GGGATGGTGGTAGAACCTGACCTTCCCAGTCCTCCTGGGAGCTCATGTATACCTGGGGCAATAGCTGTGTAAATGAATCAAAATTTCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000514657.2 ENST00000649085.1 ENST00000656860.1 |
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| CDS TCA 90 bp | TCTTGCCTTCTGAGTTCTTACATTCTCCTTGCCTTCATTCTCTCTTaGAGTAGGGAGATTATCCTGGGATATCCAGATGGGCCCAATGCA | + |
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Preference number: 5 (lower is better) Translates to: SCLLSSYILLAFILS*SREIILGYPDGPNA Trigger: TGCATTGGGCCCATCTGGATATCCCAGGATAATCTCCCTACTTCAAGAGAGAATGAAGGCAAGGAGAATGTAAGAACTCAGAAGGCAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000511194.5 ENST00000656860.1 ENST00000659891.1 ENST00000669389.1 |
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| CDS TCA 90 bp | AGCAAGAAAGCCCTCACCAGATGTGGCCCTTTAACTTTGCACATGTaGGCATCCATAACTTGTTTCCTTTTCTGTCACCCTGAAATGGCA | + |
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Preference number: 5 (lower is better) Translates to: SKKALTRCGPLTLHM*ASITCFLFCHPEMA Trigger: TGCCATTTCAGGGTGACAGAAAAGGAAACAAGTTATGGATGCTCACATGTGCAAAGTTAAAGGGCCACATCTGGTGAGGGCTTTCTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649085.1 |
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| CDS GCA 90 bp | ATGTCTGGAACTCTTAGCAAAGCAGTACACTCACTCCACATGCTCTaGATTCTGGAATTGTCAGGATGGAGAGACATCCCAAAATCTGTC | + |
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Preference number: 5 (lower is better) Translates to: MSGTLSKAVHSLHML*ILELSGWRDIPKSV Trigger: GACAGATTTTGGGATGTCTCTCCATCCTGACAATTCCAGAATGCAGAGCATGTGGAGTGAGTGTACTGCTTTGCTAAGAGTTCCAGACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649085.1 ENST00000656860.1 |
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| CDS CCA 90 bp | CAGTTTATTCCACTGGCTTTGTTACCTTTCCTTACAACTGGGCTTTaGTCTGAGCTACCTCAGTCCATCCCAACAGATTTCCCTAACTTG | + |
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Preference number: 5 (lower is better) Translates to: QFIPLALLPFLTTGL*SELPQSIPTDFPNL Trigger: CAAGTTAGGGAAATCTGTTGGGATGGACTGAGGTAGCTCAGACCAAAGCCCAGTTGTAAGGAAAGGTAACAAAGCCAGTGGAATAAACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000514657.2 ENST00000649085.1 ENST00000656860.1 |
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| CDS GCA 90 bp | AGAGAATGTCTGGAACTCTTAGCAAAGCAGTACACTCACTCCACATaGTCTGCATTCTGGAATTGTCAGGATGGAGAGACATCCCAAAAT | + |
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Preference number: 5 (lower is better) Translates to: RECLELLAKQYTHST*SAFWNCQDGETSQN Trigger: ATTTTGGGATGTCTCTCCATCCTGACAATTCCAGAATGCAGAGCATGTGGAGTGAGTGTACTGCTTTGCTAAGAGTTCCAGACATTCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649085.1 ENST00000656860.1 |
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| CDS CCA 90 bp | GGCATTGCTTCTGCCAATTTTAAGCATCTAGTCAGTTTATTCCACTaGCTTTGTTACCTTTCCTTACAACTGGGCTTTGGTCTGAGCTAC | + |
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Preference number: 5 (lower is better) Translates to: GIASANFKHLVSLFH*LCYLSLQLGFGLSY Trigger: GTAGCTCAGACCAAAGCCCAGTTGTAAGGAAAGGTAACAAAGCCAGTGGAATAAACTGACTAGATGCTTAAAATTGGCAGAAGCAATGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000514657.2 ENST00000649085.1 ENST00000656860.1 |
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| CDS CCA 90 bp | GAACTCTTAGCAAAGCAGTACACTCACTCCACATGCTCTGCATTCTaGAATTGTCAGGATGGAGAGACATCCCAAAATCTGTCAAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: ELLAKQYTHSTCSAF*NCQDGETSQNLSKF Trigger: AAACTTTGACAGATTTTGGGATGTCTCTCCATCCTGACAATTCCAGAATGCAGAGCATGTGGAGTGAGTGTACTGCTTTGCTAAGAGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649085.1 ENST00000656860.1 |
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| CDS CCA 72 bp | GCCTCTCCAGCAGTCTGTGCCACCATTGCTGCCAGGTaGCATCAGCTCCCGCTCAGCATCCTCCTCCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: ASPAVCATIAAR*HQLPLSILLLS Trigger: AGACAGGAGGAGGATGCTGAGCGGGAGCTGATGCCACCTGGCAGCAATGGTGGCACAGACTGCTGGAGAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511194.5 ENST00000649085.1 |
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| CDS GCA 72 bp | GGCTTGGGTTCCAATCTGTGCCTCTCCAGCAGTCTGTaGCACCATTGCTGCCAGGTGGCATCAGCTCCCGCT | + |
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Preference number: 6 (lower is better) Translates to: GLGSNLCLSSSL*HHCCQVASAPA Trigger: AGCGGGAGCTGATGCCACCTGGCAGCAATGGTGGCACAGACTGCTGGAGAGGCACAGATTGGAACCCAAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511194.5 ENST00000649085.1 |
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| CDS TCA 72 bp | TTCCCTTATGTGCCACTGCTTCATAGCTGCAGTAACTaGAGGGCCCTGAAGGTGCATTCATGCAAAGTTCGC | + |
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Preference number: 6 (lower is better) Translates to: FPYVPLLHSCSN*RALKVHSCKVR Trigger: GCGAACTTTGCATGAATGCACCTTCAGGGCCCTTCAGTTACTGCAGCTATGAAGCAGTGGCACATAAGGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511194.5 |
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| CDS TCA 72 bp | AACTTCCCTTATGTGCCACTGCATAGCTGCAGTAACTaGAGGGCCCTGAAGGTGCATTCATGCAAAGTTCGC | + |
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Preference number: 6 (lower is better) Translates to: NFPYVPLHSCSN*RALKVHSCKVR Trigger: GCGAACTTTGCATGAATGCACCTTCAGGGCCCTTCAGTTACTGCAGCTATGCAGTGGCACATAAGGGAAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649085.1 |
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| CDS GCA 72 bp | GCAAAGTTCGCTAGCGATGCATGTGATGTCCTCTGCTaGCTCAATACTCTTCAGAGAATCCTCACCAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: AKFASDACDVLC*LNTLQRILTSK Trigger: CTTGCTGGTGAGGATTCTCTGAAGAGTATTGAGGCAGCAGAGGACATCACATGCATCGCTAGCGAACTTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511194.5 ENST00000649085.1 |
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| CDS GCA 72 bp | CATGCAAAGTTCGCTAGCGATGCATGTGATGTCCTCTaGTGCCTCAATACTCTTCAGAGAATCCTCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: HAKFASDACDVL*CLNTLQRILTS Trigger: GCTGGTGAGGATTCTCTGAAGAGTATTGAGGCAGCAGAGGACATCACATGCATCGCTAGCGAACTTTGCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511194.5 ENST00000649085.1 |
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| CDS CCA 72 bp | CCTCAGAACCAAACATTCCAGCCATCTTGTCCCTCCTaGCTTCATTTTGGTCCTTTCTCCCTCTGCTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: PQNQTFQPSCPS*LHFGPFSLCFH Trigger: ATGGAAGCAGAGGGAGAAAGGACCAAAATGAAGCCAGGAGGGACAAGATGGCTGGAATGTTTGGTTCTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000511194.5 ENST00000514657.2 ENST00000656860.1 ENST00000659891.1 |
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| CDS CCA 72 bp | AAGGTCCACATGCTCTGCATTCTGGAATTGTCAGGATaGAGAGACATCCTACACCAGCAGGAAAATGGGGTA | + |
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Preference number: 6 (lower is better) Translates to: KVHMLCILELSG*RDILHQQENGV Trigger: TACCCCATTTTCCTGCTGGTGTAGGATGTCTCTCCATCCTGACAATTCCAGAATGCAGAGCATGTGGACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511194.5 |
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| CDS GCA 72 bp | CTGGAACTCTTAGCAAAGCAGTACACTCACTCCACATaGTCTGCATTCTGGAATTGTCAGGATGGAGAGACA | + |
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Preference number: 6 (lower is better) Translates to: LELLAKQYTHST*SAFWNCQDGET Trigger: TGTCTCTCCATCCTGACAATTCCAGAATGCAGAGCATGTGGAGTGAGTGTACTGCTTTGCTAAGAGTTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000514657.2 ENST00000649085.1 ENST00000656860.1 |
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| CDS GCA 72 bp | ACTCTTAGCAAAGCAGTACACTCACTCCACATGCTCTaGATTCTGGAATTGTCAGGATGGAGAGACATCCCA | + |
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Preference number: 6 (lower is better) Translates to: TLSKAVHSLHML*ILELSGWRDIP Trigger: TGGGATGTCTCTCCATCCTGACAATTCCAGAATGCAGAGCATGTGGAGTGAGTGTACTGCTTTGCTAAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000649085.1 ENST00000656860.1 |
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| CDS CAA 90 bp | CAGCCTTCTGTAAGATTGCTCCACTCTACTGTCAGAAATGCTGATTaGTCTGAGGATCAAGCAAGGACTCACAGGAGTACTTTTCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: QPSVRLLHSTVRNAD*SEDQARTHRSTFPG Trigger: TCCTGGAAAAGTACTCCTGTGAGTCCTTGCTTGATCCTCAGACAAATCAGCATTTCTGACAGTAGAGTGGAGCAATCTTACAGAAGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669389.1 |
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| CDS CAA 72 bp | TCTGCCTCCAGAACTCAGCATCTCCAACTCTTTCTCTaGTTCAACCGCATTCTAATGCCAGCTTCTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SASRTQHLQLFL*FNRILMPASLL Trigger: AAGAAGAGAAGCTGGCATTAGAATGCGGTTGAACAAGAGAAAGAGTTGGAGATGCTGAGTTCTGGAGGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000511194.5 ENST00000656860.1 ENST00000659891.1 ENST00000669389.1 |
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| CDS CAA 72 bp | GCAGTACACTCACTCCACATGCTCTGCATTCTGGAATaGTCAGGATGGAGAGACATCCCAAAATCTGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: AVHSLHMLCILE*SGWRDIPKSVK Trigger: TTTGACAGATTTTGGGATGTCTCTCCATCCTGACAATTCCAGAATGCAGAGCATGTGGAGTGAGTGTACTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649085.1 ENST00000656860.1 |
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| CDS TCA 72 bp | CTGAGTTCTTACATTCTCCTTGCCTTCATTCTCTCTTaGAGTAGGGAGATTATCCTGGGATATCCAGATGGG | + |
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Preference number: 6 (lower is better) Translates to: LSSYILLAFILS*SREIILGYPDG Trigger: CCCATCTGGATATCCCAGGATAATCTCCCTACTTCAAGAGAGAATGAAGGCAAGGAGAATGTAAGAACTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000511194.5 ENST00000656860.1 ENST00000659891.1 ENST00000669389.1 |
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| CDS CCA 72 bp | TTTGCTGAAAGACAAATCCTGATGACTGACAGCATATaGCACTCAGATTTGTCTGTCCTCCTCCCTAGAACT | + |
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Preference number: 6 (lower is better) Translates to: FAERQILMTDSI*HSDLSVLLPRT Trigger: AGTTCTAGGGAGGAGGACAGACAAATCTGAGTGCCATATGCTGTCAGTCATCAGGATTTGTCTTTCAGCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669389.1 |
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| CDS CAA 72 bp | TGTCTGAGATGCCAGATTCAACCACTTCCTGCACTTTaGAATACTTCTTACTTTCCGGCTGTGGAAGATGTT | + |
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Preference number: 6 (lower is better) Translates to: CLRCQIQPLPAL*NTSYFPAVEDV Trigger: AACATCTTCCACAGCCGGAAAGTAAGAAGTATTCAAAAGTGCAGGAAGTGGTTGAATCTGGCATCTCAGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669389.1 |
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| CDS TCA 72 bp | GCATTCTGGAATTGTCAGGATGGAGAGACATCCTTTTaGATACTTCTTACTTTCCGGCTGTGGAAGATGTTT | + |
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Preference number: 6 (lower is better) Translates to: AFWNCQDGETSF*ILLTFRLWKMF Trigger: AAACATCTTCCACAGCCGGAAAGTAAGAAGTATTCAAAAGGATGTCTCTCCATCCTGACAATTCCAGAATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659891.1 |
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| CDS CAA 72 bp | CTCCCATATCCTTTTGGTAAGACTCCACATCACCTTTaGAATACTTCTTACTTTCCGGCTGTGGAAGATGTT | + |
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Preference number: 6 (lower is better) Translates to: LPYPFGKTPHHL*NTSYFPAVEDV Trigger: AACATCTTCCACAGCCGGAAAGTAAGAAGTATTCAAAAGGTGATGTGGAGTCTTACCAAAAGGATATGGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649085.1 |
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| CDS CAA 90 bp | CTCCAACCATGTCTGAGATGCCAGATTCAACCACTTCCTGCACTTTaGAATACTTCTTACTTTCCGGCTGTGGAAGATGTTTTAAATTCT | + |
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Preference number: 6 (lower is better) Translates to: LQPCLRCQIQPLPAL*NTSYFPAVEDVLNS Trigger: AGAATTTAAAACATCTTCCACAGCCGGAAAGTAAGAAGTATTCAAAAGTGCAGGAAGTGGTTGAATCTGGCATCTCAGACATGGTTGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669389.1 |
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| CDS CAA 90 bp | CACATGCTCTGCATTCTGGAATTGTCAGGATGGAGAGACATCCTTTaGAATACTTCTTACTTTCCGGCTGTGGAAGATGTTTTAAATTCT | + |
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Preference number: 6 (lower is better) Translates to: HMLCILELSGWRDIL*NTSYFPAVEDVLNS Trigger: AGAATTTAAAACATCTTCCACAGCCGGAAAGTAAGAAGTATTCAAAAGGATGTCTCTCCATCCTGACAATTCCAGAATGCAGAGCATGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659891.1 |
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| CDS TCA 72 bp | TCCCATATCCTTTTGGTAAGACTCCACATCACCTTTTaGATACTTCTTACTTTCCGGCTGTGGAAGATGTTT | + |
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Preference number: 6 (lower is better) Translates to: SHILLVRLHITF*ILLTFRLWKMF Trigger: AAACATCTTCCACAGCCGGAAAGTAAGAAGTATTCAAAAGGTGATGTGGAGTCTTACCAAAAGGATATGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649085.1 |
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| CDS CCA 72 bp | TCTGCCAATTTTAAGCATCTAGTCAGTTTATTCCACTaGCTTTGTTACCTTTCCTTACAACTGGGCTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: SANFKHLVSLFH*LCYLSLQLGFG Trigger: ACCAAAGCCCAGTTGTAAGGAAAGGTAACAAAGCCAGTGGAATAAACTGACTAGATGCTTAAAATTGGCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000514657.2 ENST00000649085.1 ENST00000656860.1 |
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| CDS CAA 72 bp | TTACTTTCCGGCTGTGGAAGATGTTTTAAATTCTTATaGTACTTTTCTTGCTCTCGCCCTGGAGTCAATCAC | + |
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Preference number: 6 (lower is better) Translates to: LLSGCGRCFKFL*YFSCSRPGVNH Trigger: GTGATTGACTCCAGGGCGAGAGCAAGAAAAGTACAATAAGAATTTAAAACATCTTCCACAGCCGGAAAGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000649085.1 ENST00000659891.1 ENST00000669389.1 |
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| CDS CAA 90 bp | TCTGGAAGAACTTTCATTAAATTTTGCCAACAGCCTTCTGTAAGATaGCTCCACTCTACTGTCAGAAATGCTGATTTGTCTGAGGATCAA | + |
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Preference number: 6 (lower is better) Translates to: SGRTFIKFCQQPSVR*LHSTVRNADLSEDQ Trigger: TTGATCCTCAGACAAATCAGCATTTCTGACAGTAGAGTGGAGCAATCTTACAGAAGGCTGTTGGCAAAATTTAATGAAAGTTCTTCCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669389.1 |
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| CDS CAA 72 bp | AGGTCAGTGAGTTTAGGCTCCAGGAATACACACTCATaGTTATCCCAGGTAAAACATCTTTTACAATCAATG | + |
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Preference number: 6 (lower is better) Translates to: RSVSLGSRNTHS*LSQVKHLLQSM Trigger: CATTGATTGTAAAAGATGTTTTACCTGGGATAACAATGAGTGTGTATTCCTGGAGCCTAAACTCACTGACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000514657.2 |
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| CDS CAA 90 bp | GAATACTTCTTACTTTCCGGCTGTGGAAGATGTTTTAAATTCTTATaGTACTTTTCTTGCTCTCGCCCTGGAGTCAATCACTTCTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: EYFLLSGCGRCFKFL*YFSCSRPGVNHFFK Trigger: TTTGAAGAAGTGATTGACTCCAGGGCGAGAGCAAGAAAAGTACAATAAGAATTTAAAACATCTTCCACAGCCGGAAAGTAAGAAGTATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000649085.1 ENST00000659891.1 ENST00000669389.1 |
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| CDS CAA 72 bp | ATGCAATGCTATATGAGGTCAGTTAATCTCCAAGTTTaGATTTTGTCATTCTCTGAGTGTTGGCTTCATCCT | + |
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Preference number: 6 (lower is better) Translates to: MQCYMRSVNLQV*ILSFSECWLHP Trigger: AGGATGAAGCCAACACTCAGAGAATGACAAAATCAAAACTTGGAGATTAACTGACCTCATATAGCATTGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000508992.1 ENST00000656860.1 ENST00000659891.1 |
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| CDS TCA 72 bp | TTGCAAGGACTCCAATACCATGGTGTTAAATATATATaGCATAATTCAGTAGGGCAGCTCTTAGTCATTTCA | + |
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Preference number: 6 (lower is better) Translates to: LQGLQYHGVKYI*HNSVGQLLVIS Trigger: TGAAATGACTAAGAGCTGCCCTACTGAATTATGTCATATATATTTAACACCATGGTATTGGAGTCCTTGCAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669389.1 |
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