RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02198 (Homo sapiens)

Ensembl gene IDs: ENSG00000249352

Ensembl transcript IDs: ENST00000504280.1, ENST00000505371.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp AGCCAGATCACCCTCACATGTATCTGCTGGGTGTTTGGAACCCACTaGTCACACTTGTTTTCAGCGCATGCTCAGCGTGGGTTCCGAGGG +
Preference number: 5 (lower is better)
Translates to: SQITLTCICWVFGTH*SHLFSAHAQRGFRG
Trigger: CCCTCGGAACCCACGCTGAGCATGCGCTGAAAACAAGTGTGATCAGTGGGTTCCAAACACCCAGCAGATACATGTGAGGGTGATCTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS GCA 90 bp CTGCTGGGTGTTTGGAACCCACTGATCACACTTGTTTTCAGCGCATaGTCAGCGTGGGTTCCGAGGGCCTTTCCCATGAGTAAAATGCCC +
Preference number: 5 (lower is better)
Translates to: LLGVWNPLITLVFSA*SAWVPRAFPMSKMP
Trigger: GGGCATTTTACTCATGGGAAAGGCCCTCGGAACCCACGCTGAGCATGCGCTGAAAACAAGTGTGATCAGTGGGTTCCAAACACCCAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CCA 90 bp GTTTGGAACCCACTGATCACACTTGTTTTCAGCGCATGCTCAGCGTaGGTTCCGAGGGCCTTTCCCATGAGTAAAATGCCCACGCCTCAG +
Preference number: 5 (lower is better)
Translates to: VWNPLITLVFSACSA*VPRAFPMSKMPTPQ
Trigger: CTGAGGCGTGGGCATTTTACTCATGGGAAAGGCCCTCGGAACCCACGCTGAGCATGCGCTGAAAACAAGTGTGATCAGTGGGTTCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CCA 90 bp CAGAAGTCACAGCCAGATCACCCTCACATGTATCTGCTGGGTGTTTaGAACCCACTGATCACACTTGTTTTCAGCGCATGCTCAGCGTGG +
Preference number: 5 (lower is better)
Translates to: QKSQPDHPHMYLLGV*NPLITLVFSACSAW
Trigger: CCACGCTGAGCATGCGCTGAAAACAAGTGTGATCAGTGGGTTCCAAACACCCAGCAGATACATGTGAGGGTGATCTGGCTGTGACTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS TCA 90 bp TGGAAGTCATACCTGGGAACTAGACTTAAAATAATAACTCTCCAATaGCCCCTGGAGGAACGAGTGGGTGACTTGAGAGGAACACACTGC +
Preference number: 5 (lower is better)
Translates to: WKSYLGTRLKIITLQ*PLEERVGDLRGTHC
Trigger: GCAGTGTGTTCCTCTCAAGTCACCCACTCGTTCCTCCAGGGGTCATTGGAGAGTTATTATTTTAAGTCTAGTTCCCAGGTATGACTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CCA 72 bp CCACTGATCACACTTGTTTTCAGCGCATGCTCAGCGTaGGTTCCGAGGGCCTTTCCCATGAGTAAAATGCCC +
Preference number: 6 (lower is better)
Translates to: PLITLVFSACSA*VPRAFPMSKMP
Trigger: GGGCATTTTACTCATGGGAAAGGCCCTCGGAACCCACGCTGAGCATGCGCTGAAAACAAGTGTGATCAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS TCA 72 bp ACCCTCACATGTATCTGCTGGGTGTTTGGAACCCACTaGTCACACTTGTTTTCAGCGCATGCTCAGCGTGGG +
Preference number: 6 (lower is better)
Translates to: TLTCICWVFGTH*SHLFSAHAQRG
Trigger: CCCACGCTGAGCATGCGCTGAAAACAAGTGTGATCAGTGGGTTCCAAACACCCAGCAGATACATGTGAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS TCA 72 bp CTCTCCAATGACCCCTGGAGGAACGAGTGGGTGACTTaGGAGGAACACACTGCTGTAGCAAAGACTGTGATA +
Preference number: 6 (lower is better)
Translates to: LSNDPWRNEWVT*EEHTAVAKTVI
Trigger: TATCACAGTCTTTGCTACAGCAGTGTGTTCCTCTCAAGTCACCCACTCGTTCCTCCAGGGGTCATTGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CCA 72 bp CAGCCAGATCACCCTCACATGTATCTGCTGGGTGTTTaGAACCCACTGATCACACTTGTTTTCAGCGCATGC +
Preference number: 6 (lower is better)
Translates to: QPDHPHMYLLGV*NPLITLVFSAC
Trigger: GCATGCGCTGAAAACAAGTGTGATCAGTGGGTTCCAAACACCCAGCAGATACATGTGAGGGTGATCTGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CAA 72 bp CCCACGCCTCAGTTCATCAGCTTGATGCTGCCTCTTTaGCTCAGTCTTGTCAGCTCATTTCCTGGTTCTTGC +
Preference number: 6 (lower is better)
Translates to: PTPQFISLMLPL*LSLVSSFPGSC
Trigger: GCAAGAACCAGGAAATGAGCTGACAAGACTGAGCAAAAGAGGCAGCATCAAGCTGATGAACTGAGGCGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CAA 72 bp ACAGCCAGATCACCCTCACATGTATCTGCTGGGTGTTaGGAACCCACTGATCACACTTGTTTTCAGCGCATG +
Preference number: 6 (lower is better)
Translates to: TARSPSHVSAGC*EPTDHTCFQRM
Trigger: CATGCGCTGAAAACAAGTGTGATCAGTGGGTTCCAAACACCCAGCAGATACATGTGAGGGTGATCTGGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CAA 90 bp AGTAAAATGCCCACGCCTCAGTTCATCAGCTTGATGCTGCCTCTTTaGCTCAGTCTTGTCAGCTCATTTCCTGGTTCTTGCTGTGTTCTA +
Preference number: 6 (lower is better)
Translates to: SKMPTPQFISLMLPL*LSLVSSFPGSCCVL
Trigger: TAGAACACAGCAAGAACCAGGAAATGAGCTGACAAGACTGAGCAAAAGAGGCAGCATCAAGCTGATGAACTGAGGCGTGGGCATTTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CCA 72 bp GCTGCCTCTTTTGCTCAGTCTTGTCAGCTCATTTCCTaGTTCTTGCTGTGTTCTAGGCAGATGATTCAAGAG +
Preference number: 6 (lower is better)
Translates to: AASFAQSCQLIS*FLLCSRQMIQE
Trigger: CTCTTGAATCATCTGCCTAGAACACAGCAAGAACCAGGAAATGAGCTGACAAGACTGAGCAAAAGAGGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS TCA 72 bp TACCTGGGAACTAGACTTAAAATAATAACTCTCCAATaGCCCCTGGAGGAACGAGTGGGTGACTTGAGAGGA +
Preference number: 6 (lower is better)
Translates to: YLGTRLKIITLQ*PLEERVGDLRG
Trigger: TCCTCTCAAGTCACCCACTCGTTCCTCCAGGGGTCATTGGAGAGTTATTATTTTAAGTCTAGTTCCCAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CAA 72 bp TCTTTTGCTCAGTCTTGTCAGCTCATTTCCTGGTTCTaGCTGTGTTCTAGGCAGATGATTCAAGAGATGTTT +
Preference number: 6 (lower is better)
Translates to: SFAQSCQLISWF*LCSRQMIQEMF
Trigger: AAACATCTCTTGAATCATCTGCCTAGAACACAGCAAGAACCAGGAAATGAGCTGACAAGACTGAGCAAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS GCA 72 bp AGAGATGTTTTAGACAGTCTCAGTAGAAGCTTTCACTaGATTGGAAGTCATACCTGGGAACTAGACTTAAAA +
Preference number: 6 (lower is better)
Translates to: RDVLDSLSRSFH*IGSHTWELDLK
Trigger: TTTTAAGTCTAGTTCCCAGGTATGACTTCCAATGCAGTGAAAGCTTCTACTGAGACTGTCTAAAACATCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505371.2
CDS CCA 72 bp TTTGCAGAACACTGGTACCCACTTAGAGATTTACAATaGATATTAACATTCCAGTCAAGGTTCTGGAAAAAT +
Preference number: 6 (lower is better)
Translates to: FAEHWYPLRDLQ*ILTFQSRFWKN
Trigger: ATTTTTCCAGAACCTTGACTGGAATGTTAATATCCATTGTAAATCTCTAAGTGGGTACCAGTGTTCTGCAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000504280.1