Pregenerated sensors for LINC02197 (Homo sapiens)
Ensembl gene IDs: ENSG00000250387Ensembl transcript IDs: ENST00000671145.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AAGATGAACAAACCGAGTGGGTGCTCCCAAGGTGTGTACGACCGTTaGACAGGAGACTGGAGGGACCCATGGATCCCAACCATGGACCTT | + |
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Preference number: 5 (lower is better) Translates to: KMNKPSGCSQGVYDR*TGDWRDPWIPTMDL Trigger: AAGGTCCATGGTTGGGATCCATGGGTCCCTCCAGTCTCCTGTTCAACGGTCGTACACACCTTGGGAGCACCCACTCGGTTTGTTCATCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS GCA 90 bp | GGACCTTGTTCCCCCAGTATGAACCATGAACCAGTTGAATCTGAATaGAAAGATGGAATGAGGACCACTAGAAGCAGGGAGCTCTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: GPCSPSMNHEPVESE*KDGMRTTRSRELSS Trigger: AGAAGAGAGCTCCCTGCTTCTAGTGGTCCTCATTCCATCTTTGCATTCAGATTCAACTGGTTCATGGTTCATACTGGGGGAACAAGGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS CCA 90 bp | CTGGACTTGTCTGAGTCCTTCTTTGTTATTTCAGCACTATCTCTTTaGCAGAGGGATGTTCTTCTACACAGGTCTGGGTTTTTCGTAGAT | + |
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Preference number: 5 (lower is better) Translates to: LDLSESFFVISALSL*QRDVLLHRSGFFVD Trigger: ATCTACGAAAAACCCAGACCTGTGTAGAAGAACATCCCTCTGCCAAAGAGATAGTGCTGAAATAACAAAGAAGGACTCAGACAAGTCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS TCA 72 bp | AAACCGAGTGGGTGCTCCCAAGGTGTGTACGACCGTTaGACAGGAGACTGGAGGGACCCATGGATCCCAACC | + |
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Preference number: 6 (lower is better) Translates to: KPSGCSQGVYDR*TGDWRDPWIPT Trigger: GGTTGGGATCCATGGGTCCCTCCAGTCTCCTGTTCAACGGTCGTACACACCTTGGGAGCACCCACTCGGTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS CCA 72 bp | AGCTTAGAGGAAGATGGTGGGCAGCAGGCGGATCTCTaGAGTTATCCCGCTGCCCTTTACGTAAGTCCTAAT | + |
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Preference number: 6 (lower is better) Translates to: SLEEDGGQQADL*SYPAALYVSPN Trigger: ATTAGGACTTACGTAAAGGGCAGCGGGATAACTCCAGAGATCCGCCTGCTGCCCACCATCTTCCTCTAAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS TCA 72 bp | ACCATGAACCAGTTGAATCTGAATGCAAAGATGGAATaGGGACCACTAGAAGCAGGGAGCTCTCTTCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: TMNQLNLNAKME*GPLEAGSSLLP Trigger: GGGAAGAAGAGAGCTCCCTGCTTCTAGTGGTCCTCATTCCATCTTTGCATTCAGATTCAACTGGTTCATGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS GCA 72 bp | TCCCCCAGTATGAACCATGAACCAGTTGAATCTGAATaGAAAGATGGAATGAGGACCACTAGAAGCAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: SPSMNHEPVESE*KDGMRTTRSRE Trigger: CTCCCTGCTTCTAGTGGTCCTCATTCCATCTTTGCATTCAGATTCAACTGGTTCATGGTTCATACTGGGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS CCA 72 bp | TCTGAGTCCTTCTTTGTTATTTCAGCACTATCTCTTTaGCAGAGGGATGTTCTTCTACACAGGTCTGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: SESFFVISALSL*QRDVLLHRSGF Trigger: AAACCCAGACCTGTGTAGAAGAACATCCCTCTGCCAAAGAGATAGTGCTGAAATAACAAAGAAGGACTCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS TCA 72 bp | GCCCTTTACGTAAGTCCTAATAAACTCATCTTCTCATaGAGCTGGACTTGTCTGAGTCCTTCTTTGTTATTT | + |
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Preference number: 6 (lower is better) Translates to: ALYVSPNKLIFS*SWTCLSPSLLF Trigger: AAATAACAAAGAAGGACTCAGACAAGTCCAGCTTCATGAGAAGATGAGTTTATTAGGACTTACGTAAAGGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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| CDS TCA 72 bp | CTAATAAACTCATCTTCTCATGAAGCTGGACTTGTCTaGGTCCTTCTTTGTTATTTCAGCACTATCTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LINSSSHEAGLV*VLLCYFSTISL Trigger: CAAAGAGATAGTGCTGAAATAACAAAGAAGGACTCAGACAAGTCCAGCTTCATGAGAAGATGAGTTTATTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671145.1 |
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