Pregenerated sensors for LINC02186 (Homo sapiens)
Ensembl gene IDs: ENSG00000261856Ensembl transcript IDs: ENST00000575767.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACAAGACTTTTTGTAGGAAGACACCTTAATTTCAAGGTGTGCCTCTaGCAGCAGGAATATCAACCCATGTGGTATGTCAGTGGAGGAGAT | + |
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Preference number: 5 (lower is better) Translates to: TRLFVGRHLNFKVCL*QQEYQPMWYVSGGD Trigger: ATCTCCTCCACTGACATACCACATGGGTTGATATTCCTGCTGTCAGAGGCACACCTTGAAATTAAGGTGTCTTCCTACAAAAAGTCTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS GCA 90 bp | AGACCAGTGAATTCCATGAGCATGGGCCCATTCCTGCACTTCTTTTaGTCTTGTCGTGTAGTCTTTCATTTGCTTAGCAAATATTTGCTA | + |
|
Preference number: 5 (lower is better) Translates to: RPVNSMSMGPFLHFF*SCRVVFHLLSKYLL Trigger: TAGCAAATATTTGCTAAGCAAATGAAAGACTACACGACAAGAGCAAAAGAAGTGCAGGAATGGGCCCATGCTCATGGAATTCACTGGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS GCA 90 bp | ATATTGGATACTAATTCAGAGCATATTCAGCCTTCTGGAGAAACTTaGCCCAGCCCTCCAAGGTATTACTACTTAGCTGGTGCTGTAATT | + |
|
Preference number: 5 (lower is better) Translates to: ILDTNSEHIQPSGET*PSPPRYYYLAGAVI Trigger: AATTACAGCACCAGCTAAGTAGTAATACCTTGGAGGGCTGGGGCAAGTTTCTCCAGAAGGCTGAATATGCTCTGAATTAGTATCCAATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS CAA 90 bp | TGGCGGGGTGGCAGTCTTAACTTCCAGCTCAGTGAAATCATTGTTTaGTCTTCTGGTGGCAGCATTCTTCCCTCTGGAACTAAGACCTCT | + |
|
Preference number: 6 (lower is better) Translates to: WRGGSLNFQLSEIIV*SSGGSILPSGTKTS Trigger: AGAGGTCTTAGTTCCAGAGGGAAGAATGCTGCCACCAGAAGACAAAACAATGATTTCACTGAGCTGGAAGTTAAGACTGCCACCCCGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS CAA 90 bp | CCAAGTGGCGGGGTGGCAGTCTTAACTTCCAGCTCAGTGAAATCATaGTTTTGTCTTCTGGTGGCAGCATTCTTCCCTCTGGAACTAAGA | + |
|
Preference number: 6 (lower is better) Translates to: PSGGVAVLTSSSVKS*FCLLVAAFFPLELR Trigger: TCTTAGTTCCAGAGGGAAGAATGCTGCCACCAGAAGACAAAACAATGATTTCACTGAGCTGGAAGTTAAGACTGCCACCCCGCCACTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS GCA 72 bp | ACTAATTCAGAGCATATTCAGCCTTCTGGAGAAACTTaGCCCAGCCCTCCAAGGTATTACTACTTAGCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: TNSEHIQPSGET*PSPPRYYYLAG Trigger: ACCAGCTAAGTAGTAATACCTTGGAGGGCTGGGGCAAGTTTCTCCAGAAGGCTGAATATGCTCTGAATTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS GCA 72 bp | CTTCAAAGGGCTGTTACAATATTCTATGAAGCCAGCTaGTTCAGCATCATGACGAACATGGTAAGACCAGTG | + |
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Preference number: 6 (lower is better) Translates to: LQRAVTIFYEAS*FSIMTNMVRPV Trigger: CACTGGTCTTACCATGTTCGTCATGATGCTGAAGCAGCTGGCTTCATAGAATATTGTAACAGCCCTTTGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS TCA 72 bp | TTTGTAGGAAGACACCTTAATTTCAAGGTGTGCCTCTaGCAGCAGGAATATCAACCCATGTGGTATGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: FVGRHLNFKVCL*QQEYQPMWYVS Trigger: ACTGACATACCACATGGGTTGATATTCCTGCTGTCAGAGGCACACCTTGAAATTAAGGTGTCTTCCTACAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS CCA 72 bp | CCAGGTCCCAGTATTCTTGAAGCTTATAGCCAAATTTaGGGCAGGAATTATAAATACCTCATCTCAGACAGT | + |
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Preference number: 6 (lower is better) Translates to: PGPSILEAYSQI*GRNYKYLISDS Trigger: ACTGTCTGAGATGAGGTATTTATAATTCCTGCCCCAAATTTGGCTATAAGCTTCAAGAATACTGGGACCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS CAA 90 bp | TTCTTTTGCTCTTGTCGTGTAGTCTTTCATTTGCTTAGCAAATATTaGCTAACTGTCCATGGTGTTTCACCCATTGTTGTGGCTCTAGAG | + |
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Preference number: 6 (lower is better) Translates to: FFCSCRVVFHLLSKY*LTVHGVSPIVVALE Trigger: CTCTAGAGCCACAACAATGGGTGAAACACCATGGACAGTTAGCAAATATTTGCTAAGCAAATGAAAGACTACACGACAAGAGCAAAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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| CDS CAA 72 bp | TCTTGTCGTGTAGTCTTTCATTTGCTTAGCAAATATTaGCTAACTGTCCATGGTGTTTCACCCATTGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: SCRVVFHLLSKY*LTVHGVSPIVV Trigger: CACAACAATGGGTGAAACACCATGGACAGTTAGCAAATATTTGCTAAGCAAATGAAAGACTACACGACAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000575767.1 |
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