Pregenerated sensors for LINC02176 (Homo sapiens)

Ensembl gene IDs: ENSG00000260340

Ensembl transcript IDs: ENST00000569104.1

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CAGCCTGGGCCACAGAGGAAGACCCGGGGTCTTGATGGCTTTGCCTaGATAAAGAGAACCGTGAGCCGGGTGGCCCTTCTGAAAACGACG	+
Preference number: 5 (lower is better) Translates to: QPGPQRKTRGLDGFA*IKRTVSRVALLKTT Trigger: CGTCGTTTTCAGAAGGGCCACCCGGCTCACGGTTCTCTTTATTCAGGCAAAGCCATCAAGACCCCGGGTCTTCCTCTGTGGCCCAGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569104.1
CDS CCA 90 bp	GTGAGCCGGGTGGCCCTTCTGAAAACGACGGTTAGCAGAATGGTTTaGCTCATTAACAGCCTCTCAGAAAGCCTGGTCTGGAAAATCTGT	+
Preference number: 5 (lower is better) Translates to: VSRVALLKTTVSRMV*LINSLSESLVWKIC Trigger: ACAGATTTTCCAGACCAGGCTTTCTGAGAGGCTGTTAATGAGCCAAACCATTCTGCTAACCGTCGTTTTCAGAAGGGCCACCCGGCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569104.1
CDS TCA 72 bp	CCACAGAGGAAGACCCGGGGTCTTGATGGCTTTGCCTaGATAAAGAGAACCGTGAGCCGGGTGGCCCTTCTG	+
Preference number: 6 (lower is better) Translates to: PQRKTRGLDGFA*IKRTVSRVALL Trigger: CAGAAGGGCCACCCGGCTCACGGTTCTCTTTATTCAGGCAAAGCCATCAAGACCCCGGGTCTTCCTCTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569104.1
CDS CCA 72 bp	GTGGCCCTTCTGAAAACGACGGTTAGCAGAATGGTTTaGCTCATTAACAGCCTCTCAGAAAGCCTGGTCTGG	+
Preference number: 6 (lower is better) Translates to: VALLKTTVSRMV*LINSLSESLVW Trigger: CCAGACCAGGCTTTCTGAGAGGCTGTTAATGAGCCAAACCATTCTGCTAACCGTCGTTTTCAGAAGGGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569104.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu