Pregenerated sensors for LINC02172 (Homo sapiens)
Ensembl gene IDs: ENSG00000251632Ensembl transcript IDs: ENST00000507365.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTTGGTCCCCCTGCTGCAACTTTTTATTTATCTGACTGTAGGCGCTaGGAACCAATCCACCAGTATAAGAAACTCCTCCAGCTAAATAGA | + |
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Preference number: 5 (lower is better) Translates to: VGPPAATFYLSDCRR*EPIHQYKKLLQLNR Trigger: TCTATTTAGCTGGAGGAGTTTCTTATACTGGTGGATTGGTTCCCAGCGCCTACAGTCAGATAAATAAAAAGTTGCAGCAGGGGGACCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CCA 90 bp | ATTTTACAGATGAAGAATCTTTCCCAAGATTACACAGCTGGAAAGTaGTACAGTGAGGCTTTGACCCTCATGTTTTGCCTCCAGATCCCC | + |
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Preference number: 5 (lower is better) Translates to: ILQMKNLSQDYTAGK*YSEALTLMFCLQIP Trigger: GGGGATCTGGAGGCAAAACATGAGGGTCAAAGCCTCACTGTACCACTTTCCAGCTGTGTAATCTTGGGAAAGATTCTTCATCTGTAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CCA 90 bp | TGGCAGCAGATGGGTAATAGGATGAAAGTTTTCAATATGGTGTGGTaGGGATGTATGTTTCCAGACACAACATCAAAGAGTACCAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: WQQMGNRMKVFNMVW*GCMFPDTTSKSTKQ Trigger: CTGCTTGGTACTCTTTGATGTTGTGTCTGGAAACATACATCCCCACCACACCATATTGAAAACTTTCATCCTATTACCCATCTGCTGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CCA 90 bp | TGCTGGCAGCAGATGGGTAATAGGATGAAAGTTTTCAATATGGTGTaGTGGGGATGTATGTTTCCAGACACAACATCAAAGAGTACCAAG | + |
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Preference number: 5 (lower is better) Translates to: CWQQMGNRMKVFNMV*WGCMFPDTTSKSTK Trigger: CTTGGTACTCTTTGATGTTGTGTCTGGAAACATACATCCCCACCACACCATATTGAAAACTTTCATCCTATTACCCATCTGCTGCCAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS GCA 90 bp | CGTGCCCAGCCTAACAGTGGAAGAATTTTCTTCAGCTTGCATTACTaGTTAACTAGGGTACTATTGAACTCATCAGGATTTTTAGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: RAQPNSGRIFFSLHY*LTRVLLNSSGFLVS Trigger: TGAAACTAAAAATCCTGATGAGTTCAATAGTACCCTAGTTAAGCAGTAATGCAAGCTGAAGAAAATTCTTCCACTGTTAGGCTGGGCACG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS TCA 90 bp | GTTTCCAGACACAACATCAAAGAGTACCAAGCAGAGTTCTTAATGTaGTTAACAAAGAGGCATGGAATCTGCTATCAATCTTCCTTGTTA | + |
|
Preference number: 5 (lower is better) Translates to: VSRHNIKEYQAEFLM*LTKRHGICYQSSLL Trigger: TAACAAGGAAGATTGATAGCAGATTCCATGCCTCTTTGTTAATCACATTAAGAACTCTGCTTGGTACTCTTTGATGTTGTGTCTGGAAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CCA 90 bp | CAAAGAGTACCAAGCAGAGTTCTTAATGTGATTAACAAAGAGGCATaGAATCTGCTATCAATCTTCCTTGTTACTGTCATAGTACTTCCA | + |
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Preference number: 5 (lower is better) Translates to: QRVPSRVLNVINKEA*NLLSIFLVTVIVLP Trigger: TGGAAGTACTATGACAGTAACAAGGAAGATTGATAGCAGATTCCATGCCTCTTTGTTAATCACATTAAGAACTCTGCTTGGTACTCTTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CAA 72 bp | CAAGATTACACAGCTGGAAAGTGGTACAGTGAGGCTTaGACCCTCATGTTTTGCCTCCAGATCCCCTGCACT | + |
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Preference number: 6 (lower is better) Translates to: QDYTAGKWYSEA*TLMFCLQIPCT Trigger: AGTGCAGGGGATCTGGAGGCAAAACATGAGGGTCAAAGCCTCACTGTACCACTTTCCAGCTGTGTAATCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS TCA 72 bp | AAGATTACACAGCTGGAAAGTGGTACAGTGAGGCTTTaGCCCTCATGTTTTGCCTCCAGATCCCCTGCACTT | + |
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Preference number: 6 (lower is better) Translates to: KITQLESGTVRL*PSCFASRSPAL Trigger: AAGTGCAGGGGATCTGGAGGCAAAACATGAGGGTCAAAGCCTCACTGTACCACTTTCCAGCTGTGTAATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CAA 90 bp | GTGAGCCACCGTGCCCAGCCTAACAGTGGAAGAATTTTCTTCAGCTaGCATTACTGCTTAACTAGGGTACTATTGAACTCATCAGGATTT | + |
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Preference number: 6 (lower is better) Translates to: VSHRAQPNSGRIFFS*HYCLTRVLLNSSGF Trigger: AAATCCTGATGAGTTCAATAGTACCCTAGTTAAGCAGTAATGCAAGCTGAAGAAAATTCTTCCACTGTTAGGCTGGGCACGGTGGCTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CCA 72 bp | ATGAAGAATCTTTCCCAAGATTACACAGCTGGAAAGTaGTACAGTGAGGCTTTGACCCTCATGTTTTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: MKNLSQDYTAGK*YSEALTLMFCL Trigger: GAGGCAAAACATGAGGGTCAAAGCCTCACTGTACCACTTTCCAGCTGTGTAATCTTGGGAAAGATTCTTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CAA 72 bp | CGTGCCCAGCCTAACAGTGGAAGAATTTTCTTCAGCTaGCATTACTGCTTAACTAGGGTACTATTGAACTCA | + |
|
Preference number: 6 (lower is better) Translates to: RAQPNSGRIFFS*HYCLTRVLLNS Trigger: TGAGTTCAATAGTACCCTAGTTAAGCAGTAATGCAAGCTGAAGAAAATTCTTCCACTGTTAGGCTGGGCACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CCA 72 bp | CAGATGGGTAATAGGATGAAAGTTTTCAATATGGTGTaGTGGGGATGTATGTTTCCAGACACAACATCAAAG | + |
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Preference number: 6 (lower is better) Translates to: QMGNRMKVFNMV*WGCMFPDTTSK Trigger: CTTTGATGTTGTGTCTGGAAACATACATCCCCACCACACCATATTGAAAACTTTCATCCTATTACCCATCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CCA 72 bp | ATGGGTAATAGGATGAAAGTTTTCAATATGGTGTGGTaGGGATGTATGTTTCCAGACACAACATCAAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: MGNRMKVFNMVW*GCMFPDTTSKS Trigger: ACTCTTTGATGTTGTGTCTGGAAACATACATCCCCACCACACCATATTGAAAACTTTCATCCTATTACCCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS GCA 72 bp | CCTAACAGTGGAAGAATTTTCTTCAGCTTGCATTACTaGTTAACTAGGGTACTATTGAACTCATCAGGATTT | + |
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Preference number: 6 (lower is better) Translates to: PNSGRIFFSLHY*LTRVLLNSSGF Trigger: AAATCCTGATGAGTTCAATAGTACCCTAGTTAAGCAGTAATGCAAGCTGAAGAAAATTCTTCCACTGTTAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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| CDS CCA 72 bp | CCAAGCAGAGTTCTTAATGTGATTAACAAAGAGGCATaGAATCTGCTATCAATCTTCCTTGTTACTGTCATA | + |
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Preference number: 6 (lower is better) Translates to: PSRVLNVINKEA*NLLSIFLVTVI Trigger: TATGACAGTAACAAGGAAGATTGATAGCAGATTCCATGCCTCTTTGTTAATCACATTAAGAACTCTGCTTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507365.1 |
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