Pregenerated sensors for LINC02171 (Homo sapiens)
Ensembl gene IDs: ENSG00000250632Ensembl transcript IDs: ENST00000508619.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCTGGGCCACCAGCAGAAACCTTTTCCCAACGTCCACGTCAGTGCTaGCAGGCGATGGGCTTCTCTGTGGCCGGTCCCTCTCTGGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: AGPPAETFSQRPRQC*QAMGFSVAGPSLAL Trigger: GAGAGCCAGAGAGGGACCGGCCACAGAGAAGCCCATCGCCTGCCAGCACTGACGTGGACGTTGGGAAAAGGTTTCTGCTGGTGGCCCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 90 bp | TGTGGACCTGCCAGCCTTCCCGGTGAGCACAGGATGGTGAGAACCTaGAGCAGCCATGTAGGTGGGGCTTCGTGGAAGGCTGCGTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: CGPASLPGEHRMVRT*SSHVGGASWKAAWV Trigger: TACCCACGCAGCCTTCCACGAAGCCCCACCTACATGGCTGCTGCAGGTTCTCACCATCCTGTGCTCACCGGGAAGGCTGGCAGGTCCACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 90 bp | TGTGGCCGGTCCCTCTCTGGCTCTCTCCAGGTTCTGCATGTGTCCTaGTCTCTCCTGAGCACCTGTCACGCCCCTGAGGCTTGCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: CGRSLSGSLQVLHVS*SLLSTCHAPEACSL Trigger: GAGTGAGCAAGCCTCAGGGGCGTGACAGGTGCTCAGGAGAGAGCAGGACACATGCAGAACCTGGAGAGAGCCAGAGAGGGACCGGCCACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS TCA 90 bp | CCCTCTCTGGCTCTCTCCAGGTTCTGCATGTGTCCTGCTCTCTCCTaGGCACCTGTCACGCCCCTGAGGCTTGCTCACTCCTCTGTCTCG | + |
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Preference number: 5 (lower is better) Translates to: PSLALSRFCMCPALS*APVTPLRLAHSSVS Trigger: CGAGACAGAGGAGTGAGCAAGCCTCAGGGGCGTGACAGGTGCTCAGGAGAGAGCAGGACACATGCAGAACCTGGAGAGAGCCAGAGAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 90 bp | ACCTGTCACGCCCCTGAGGCTTGCTCACTCCTCTGTCTCGGGGCTTaGAGAAGAATGCTTGGGCAGGTCTCTCTAGCACCAAGGCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: TCHAPEACSLLCLGA*RRMLGQVSLAPRPC Trigger: GCAGGGCCTTGGTGCTAGAGAGACCTGCCCAAGCATTCTTCTGCAAGCCCCGAGACAGAGGAGTGAGCAAGCCTCAGGGGCGTGACAGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 90 bp | ATATCTGTTAGAAAATCCGCTGCAGCACCCCCAAGAGGCGCAGTTTaGTGCCCGTGCACTCCCGCTCTCCCTGCAGCTCGGGAGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: ISVRKSAAAPPRGAV*CPCTPALPAARELL Trigger: CAGCAGCTCCCGAGCTGCAGGGAGAGCGGGAGTGCACGGGCACCAAACTGCGCCTCTTGGGGGTGCTGCAGCGGATTTTCTAACAGATAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 90 bp | AGAACCTGCAGCAGCCATGTAGGTGGGGCTTCGTGGAAGGCTGCGTaGGTACCCAGGCTCTCTAGGGTAGCCTATCCTGCACACGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: RTCSSHVGGASWKAA*VPRLSRVAYPAHGL Trigger: CAAGCCGTGTGCAGGATAGGCTACCCTAGAGAGCCTGGGTACCCACGCAGCCTTCCACGAAGCCCCACCTACATGGCTGCTGCAGGTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 90 bp | GCTTGCAGAAGAATGCTTGGGCAGGTCTCTCTAGCACCAAGGCCCTaGTTCTCCCCAGCCCATGGTTTCCGGTGTGGACCTGCCAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: ACRRMLGQVSLAPRP*FSPAHGFRCGPASL Trigger: AAGGCTGGCAGGTCCACACCGGAAACCATGGGCTGGGGAGAAGCAGGGCCTTGGTGCTAGAGAGACCTGCCCAAGCATTCTTCTGCAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 90 bp | CATGTGTCCTGCTCTCTCCTGAGCACCTGTCACGCCCCTGAGGCTTaGTCACTCCTCTGTCTCGGGGCTTGCAGAAGAATGCTTGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: HVSCSLLSTCHAPEA*SLLCLGACRRMLGQ Trigger: CTGCCCAAGCATTCTTCTGCAAGCCCCGAGACAGAGGAGTGAGCAAGCCTCAGGGGCGTGACAGGTGCTCAGGAGAGAGCAGGACACATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 90 bp | CACAGGATGGTGAGAACCTGCAGCAGCCATGTAGGTGGGGCTTCGTaGAAGGCTGCGTGGGTACCCAGGCTCTCTAGGGTAGCCTATCCT | + |
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Preference number: 5 (lower is better) Translates to: HRMVRTCSSHVGGAS*KAAWVPRLSRVAYP Trigger: AGGATAGGCTACCCTAGAGAGCCTGGGTACCCACGCAGCCTTCCACGAAGCCCCACCTACATGGCTGCTGCAGGTTCTCACCATCCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 90 bp | CAGCAGAAACCTTTTCCCAACGTCCACGTCAGTGCTGGCAGGCGATaGGCTTCTCTGTGGCCGGTCCCTCTCTGGCTCTCTCCAGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: QQKPFPNVHVSAGRR*ASLWPVPLWLSPGS Trigger: AGAACCTGGAGAGAGCCAGAGAGGGACCGGCCACAGAGAAGCCCATCGCCTGCCAGCACTGACGTGGACGTTGGGAAAAGGTTTCTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 90 bp | CTCCCACCTAACAGTCCTGAGCTGATTGCTCCAGGTCGATGGTCATaGCCACTCAGGGACCCAGGTCTCCCCATGTTGCTCCCACACCGA | + |
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Preference number: 5 (lower is better) Translates to: LPPNSPELIAPGRWS*PLRDPGLPMLLPHR Trigger: TCGGTGTGGGAGCAACATGGGGAGACCTGGGTCCCTGAGTGGCCATGACCATCGACCTGGAGCAATCAGCTCAGGACTGTTAGGTGGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS TCA 90 bp | CAGCCTTGTGTTTCCGGAAGGATTCTCAGGCTTGAGGCGTGGGAGTaGGGAATCCCAGCCAGGGCTGGGCCACCAGCAGAAACCTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: QPCVSGRILRLEAWE*GIPARAGPPAETFS Trigger: GGAAAAGGTTTCTGCTGGTGGCCCAGCCCTGGCTGGGATTCCTCACTCCCACGCCTCAAGCCTGAGAATCCTTCCGGAAACACAAGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 90 bp | TTGCTGCTCCCACCTAACAGTCCTGAGCTGATTGCTCCAGGTCGATaGTCATGGCCACTCAGGGACCCAGGTCTCCCCATGTTGCTCCCA | + |
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Preference number: 5 (lower is better) Translates to: LLLPPNSPELIAPGR*SWPLRDPGLPMLLP Trigger: TGGGAGCAACATGGGGAGACCTGGGTCCCTGAGTGGCCATGACCATCGACCTGGAGCAATCAGCTCAGGACTGTTAGGTGGGAGCAGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 72 bp | GCTGCAGCACCCCCAAGAGGCGCAGTTTGGTGCCCGTaGACTCCCGCTCTCCCTGCAGCTCGGGAGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: AAAPPRGAVWCP*TPALPAARELL Trigger: CAGCAGCTCCCGAGCTGCAGGGAGAGCGGGAGTGCACGGGCACCAAACTGCGCCTCTTGGGGGTGCTGCAGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 72 bp | GGTCATGGCCACTCAGGGACCCAGGTCTCCCCATGTTaGTCCCACACCGAGGCCATGGTCACCTGGCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: GHGHSGTQVSPC*SHTEAMVTWQV Trigger: CACCTGCCAGGTGACCATGGCCTCGGTGTGGGAGCAACATGGGGAGACCTGGGTCCCTGAGTGGCCATGACC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 72 bp | AGAAAATCCGCTGCAGCACCCCCAAGAGGCGCAGTTTaGTGCCCGTGCACTCCCGCTCTCCCTGCAGCTCGG | + |
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Preference number: 6 (lower is better) Translates to: RKSAAAPPRGAV*CPCTPALPAAR Trigger: CCGAGCTGCAGGGAGAGCGGGAGTGCACGGGCACCAAACTGCGCCTCTTGGGGGTGCTGCAGCGGATTTTCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 72 bp | CCACCAGCAGAAACCTTTTCCCAACGTCCACGTCAGTaGTGGCAGGCGATGGGCTTCTCTGTGGCCGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: PPAETFSQRPRQ*WQAMGFSVAGP Trigger: GGGACCGGCCACAGAGAAGCCCATCGCCTGCCAGCACTGACGTGGACGTTGGGAAAAGGTTTCTGCTGGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 72 bp | GCACAGGATGGTGAGAACCTGCAGCAGCCATGTAGGTaGGGCTTCGTGGAAGGCTGCGTGGGTACCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: AQDGENLQQPCR*GFVEGCVGTQA Trigger: AGCCTGGGTACCCACGCAGCCTTCCACGAAGCCCCACCTACATGGCTGCTGCAGGTTCTCACCATCCTGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 72 bp | CCCAGGTCTCCCCATGTTGCTCCCACACCGAGGCCATaGTCACCTGGCAGGTGCAGGTCCAGCCTTGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: PRSPHVAPTPRP*SPGRCRSSLVF Trigger: AAACACAAGGCTGGACCTGCACCTGCCAGGTGACCATGGCCTCGGTGTGGGAGCAACATGGGGAGACCTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 72 bp | GTGAGAACCTGCAGCAGCCATGTAGGTGGGGCTTCGTaGAAGGCTGCGTGGGTACCCAGGCTCTCTAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: VRTCSSHVGGAS*KAAWVPRLSRV Trigger: TACCCTAGAGAGCCTGGGTACCCACGCAGCCTTCCACGAAGCCCCACCTACATGGCTGCTGCAGGTTCTCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CCA 72 bp | CCAGCAGAAACCTTTTCCCAACGTCCACGTCAGTGCTaGCAGGCGATGGGCTTCTCTGTGGCCGGTCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: PAETFSQRPRQC*QAMGFSVAGPS Trigger: AGAGGGACCGGCCACAGAGAAGCCCATCGCCTGCCAGCACTGACGTGGACGTTGGGAAAAGGTTTCTGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 72 bp | AGAATGCTTGGGCAGGTCTCTCTAGCACCAAGGCCCTaGTTCTCCCCAGCCCATGGTTTCCGGTGTGGACCT | + |
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Preference number: 6 (lower is better) Translates to: RMLGQVSLAPRP*FSPAHGFRCGP Trigger: AGGTCCACACCGGAAACCATGGGCTGGGGAGAAGCAGGGCCTTGGTGCTAGAGAGACCTGCCCAAGCATTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS GCA 72 bp | TGCTCTCTCCTGAGCACCTGTCACGCCCCTGAGGCTTaGTCACTCCTCTGTCTCGGGGCTTGCAGAAGAATG | + |
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Preference number: 6 (lower is better) Translates to: CSLLSTCHAPEA*SLLCLGACRRM Trigger: CATTCTTCTGCAAGCCCCGAGACAGAGGAGTGAGCAAGCCTCAGGGGCGTGACAGGTGCTCAGGAGAGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CAA 72 bp | AGGTCCAGCCTTGTGTTTCCGGAAGGATTCTCAGGCTaGAGGCGTGGGAGTGAGGAATCCCAGCCAGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RSSLVFPEGFSG*RRGSEESQPGL Trigger: CAGCCCTGGCTGGGATTCCTCACTCCCACGCCTCAAGCCTGAGAATCCTTCCGGAAACACAAGGCTGGACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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| CDS CAA 72 bp | CTATCCTGCACACGGCTTGGTGTGCACAGAGCTGACTaGGAGGTGAAATGGATGCATTTTGTAGATTCAATA | + |
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Preference number: 6 (lower is better) Translates to: LSCTRLGVHRAD*EVKWMHFVDSI Trigger: TATTGAATCTACAAAATGCATCCATTTCACCTCCAAGTCAGCTCTGTGCACACCAAGCCGTGTGCAGGATAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508619.1 |
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