Pregenerated sensors for LINC02169 (Homo sapiens)
Ensembl gene IDs: ENSG00000259517Ensembl transcript IDs: ENST00000561336.2, ENST00000649252.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCTCGAGAGCCAGAGGCACCAGGGCGCTGGGAGTGCAGCCTGCCCTaGTTGACACGGAAGCTGGTGCTCCAAGCCACCATCCCTGCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: PREPEAPGRWECSLP*LTRKLVLQATIPAL Trigger: CAAAGCAGGGATGGTGGCTTGGAGCACCAGCTTCCGTGTCAAGCAGGGCAGGCTGCACTCCCAGCGCCCTGGTGCCTCTGGCTCTCGAGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561336.2 ENST00000649252.1 |
||
| CDS GCA 90 bp | ATGAGGAACAAGCCTCGAGAGCCAGAGGCACCAGGGCGCTGGGAGTaGAGCCTGCCCTGCTTGACACGGAAGCTGGTGCTCCAAGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: MRNKPREPEAPGRWE*SLPCLTRKLVLQAT Trigger: GGTGGCTTGGAGCACCAGCTTCCGTGTCAAGCAGGGCAGGCTGCACTCCCAGCGCCCTGGTGCCTCTGGCTCTCGAGGCTTGTTCCTCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561336.2 ENST00000649252.1 |
||
| CDS CCA 90 bp | CTAGAGATGAGGAACAAGCCTCGAGAGCCAGAGGCACCAGGGCGCTaGGAGTGCAGCCTGCCCTGCTTGACACGGAAGCTGGTGCTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: LEMRNKPREPEAPGR*ECSLPCLTRKLVLQ Trigger: TTGGAGCACCAGCTTCCGTGTCAAGCAGGGCAGGCTGCACTCCCAGCGCCCTGGTGCCTCTGGCTCTCGAGGCTTGTTCCTCATCTCTAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561336.2 ENST00000649252.1 |
||
| CDS TCA 90 bp | CAGGTTAGGAAGGTCTGGTTCCAGAACCCAGGAGAAGAGCAAAGTTaGCCTTCCATCCTCAGATTCTTCAGGCCAGAAGTTCACCCACCC | + |
|
Preference number: 5 (lower is better) Translates to: QVRKVWFQNPGEEQS*PSILRFFRPEVHPP Trigger: GGGTGGGTGAACTTCTGGCCTGAAGAATCTGAGGATGGAAGGTCAACTTTGCTCTTCTCCTGGGTTCTGGAACCAGACCTTCCTAACCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561336.2 |
||
| CDS GCA 72 bp | AAGCCTCGAGAGCCAGAGGCACCAGGGCGCTGGGAGTaGAGCCTGCCCTGCTTGACACGGAAGCTGGTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: KPREPEAPGRWE*SLPCLTRKLVL Trigger: GAGCACCAGCTTCCGTGTCAAGCAGGGCAGGCTGCACTCCCAGCGCCCTGGTGCCTCTGGCTCTCGAGGCTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561336.2 ENST00000649252.1 |
||
| CDS GCA 72 bp | CTTGACACGGAAGCTGGTGCTCCAAGCCACCATCCCTaGTTTGCAAGCCTAGTTGCTGGAAGAAGAGTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LDTEAGAPSHHP*FASLVAGRRVW Trigger: CCAGACTCTTCTTCCAGCAACTAGGCTTGCAAAGCAGGGATGGTGGCTTGGAGCACCAGCTTCCGTGTCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561336.2 |
||
| CDS GCA 72 bp | CTTGACACGGAAGCTGGTGCTCCAAGCCACCATCCCTaGTTTGCAAGCCTAGCTGCTGTGACTCTTACTTGC | + |
|
Preference number: 6 (lower is better) Translates to: LDTEAGAPSHHP*FASLAAVTLTC Trigger: GCAAGTAAGAGTCACAGCAGCTAGGCTTGCAAAGCAGGGATGGTGGCTTGGAGCACCAGCTTCCGTGTCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649252.1 |
||
| CDS CAA 72 bp | GCCAGAAGTTCACCCACCCCTTTTCCTAGGGAAAGCTaGAGAAGTTGTGGCATCTTCCATGCCCATTTCCAA | + |
|
Preference number: 6 (lower is better) Translates to: ARSSPTPFPRES*RSCGIFHAHFQ Trigger: TTGGAAATGGGCATGGAAGATGCCACAACTTCTCAAGCTTTCCCTAGGAAAAGGGGTGGGTGAACTTCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561336.2 ENST00000649252.1 |
||
| CDS TCA 72 bp | CCAGAAGTTCACCCACCCCTTTTCCTAGGGAAAGCTTaGGAAGTTGTGGCATCTTCCATGCCCATTTCCAAT | + |
|
Preference number: 6 (lower is better) Translates to: PEVHPPLFLGKA*EVVASSMPISN Trigger: ATTGGAAATGGGCATGGAAGATGCCACAACTTCTCAAGCTTTCCCTAGGAAAAGGGGTGGGTGAACTTCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561336.2 ENST00000649252.1 |
||
| CDS CAA 90 bp | ATTCTTCAGGCCAGAAGTTCACCCACCCCTTTTCCTAGGGAAAGCTaGAGAAGTTGTGGCATCTTCCATGCCCATTTCCAATACAGGATC | + |
|
Preference number: 6 (lower is better) Translates to: ILQARSSPTPFPRES*RSCGIFHAHFQYRI Trigger: GATCCTGTATTGGAAATGGGCATGGAAGATGCCACAACTTCTCAAGCTTTCCCTAGGAAAAGGGGTGGGTGAACTTCTGGCCTGAAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561336.2 ENST00000649252.1 |
||
| CDS TCA 72 bp | CACAAGGTCAAAAGATCGAGACCATCCTGGTCAACATaGAGAAACTCCATCTCTCAGATTCTTCAGGCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: HKVKRSRPSWST*RNSISQILQAR Trigger: TCTGGCCTGAAGAATCTGAGAGATGGAGTTTCTTCATGTTGACCAGGATGGTCTCGATCTTTTGACCTTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649252.1 |
||