Pregenerated sensors for LINC02165 (Homo sapiens)
Ensembl gene IDs: ENSG00000261014Ensembl transcript IDs: ENST00000563061.2, ENST00000655106.1, ENST00000656744.1, ENST00000661557.1, ENST00000664326.1, ENST00000666316.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGGAGTATCCTGGACTTCTGCTTGGTCACTCAAGGGCACATATCCTaGCCACATAAACATCAGGGATGTGATTTAACACAGCTTGAACAC | + |
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Preference number: 5 (lower is better) Translates to: RSILDFCLVTQGHIS*PHKHQGCDLTQLEH Trigger: GTGTTCAAGCTGTGTTAAATCACATCCCTGATGTTTATGTGGTCAGGATATGTGCCCTTGAGTGACCAAGCAGAAGTCCAGGATACTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS TCA 90 bp | GAAAGTTCCACTCACTTCTGCTTGGTCACTCAAGGGCACATATCCTaGCCACATAAACATCAGGGATGTGATTTAACACAGCTTGAACAC | + |
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Preference number: 5 (lower is better) Translates to: ESSTHFCLVTQGHIS*PHKHQGCDLTQLEH Trigger: GTGTTCAAGCTGTGTTAAATCACATCCCTGATGTTTATGTGGTCAGGATATGTGCCCTTGAGTGACCAAGCAGAAGTGAGTGGAACTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655106.1 |
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| CDS TCA 90 bp | ACATTGAAGATGCACTTCTGCTTGGTCACTCAAGGGCACATATCCTaGCCACATAAACATCAGGGATGTGATTTAACACAGCTTGAACAC | + |
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Preference number: 5 (lower is better) Translates to: TLKMHFCLVTQGHIS*PHKHQGCDLTQLEH Trigger: GTGTTCAAGCTGTGTTAAATCACATCCCTGATGTTTATGTGGTCAGGATATGTGCCCTTGAGTGACCAAGCAGAAGTGCATCTTCAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563061.2 |
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| CDS TCA 90 bp | CATATCTATCCCAACTTCTGCTTGGTCACTCAAGGGCACATATCCTaGCCACATAAACATCAGGGATGTGATTTAACACAGCTTGAACAC | + |
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Preference number: 5 (lower is better) Translates to: HIYPNFCLVTQGHIS*PHKHQGCDLTQLEH Trigger: GTGTTCAAGCTGTGTTAAATCACATCCCTGATGTTTATGTGGTCAGGATATGTGCCCTTGAGTGACCAAGCAGAAGTTGGGATAGATATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666316.1 |
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| CDS CCA 90 bp | AATTTATTGTCACGCTTGTGCCAAAGCTCCTGTCCCTATACAACATaGCTTCTTGCCAAATGTAGGTCACTTGATGCTCCATTTAATCCC | + |
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Preference number: 5 (lower is better) Translates to: NLLSRLCQSSCPYTT*LLAKCRSLDAPFNP Trigger: GGGATTAAATGGAGCATCAAGTGACCTACATTTGGCAAGAAGCCATGTTGTATAGGGACAGGAGCTTTGGCACAAGCGTGACAATAAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666316.1 |
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| CDS CCA 90 bp | GCAAATTTTGACATATATTTCATAAAGCTCTGCAAAAATTCCCAGTaGGACTGGTCACTAGTTATTCACACTAGCGGCCAACTTGATCAT | + |
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Preference number: 5 (lower is better) Translates to: ANFDIYFIKLCKNSQ*DWSLVIHTSGQLDH Trigger: ATGATCAAGTTGGCCGCTAGTGTGAATAACTAGTGACCAGTCCCACTGGGAATTTTTGCAGAGCTTTATGAAATATATGTCAAAATTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS GCA 72 bp | AAAAGTCTCTGCAAGCATTCATGTGCAACCTGGAAGTaGGGGCTCATGGACCCACCCTTGGCCAATGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: KSLCKHSCATWK*GLMDPPLANGN Trigger: GTTCCCATTGGCCAAGGGTGGGTCCATGAGCCCGCACTTCCAGGTTGCACATGAATGCTTGCAGAGACTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS CCA 72 bp | GTGCAACCTGGAAGTGCGGGCTCATGGACCCACCCTTaGCCAATGGGAACAAAATCTGATAGAAATTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: VQPGSAGSWTHP*PMGTKSDRNFP Trigger: GGGAAAATTTCTATCAGATTTTGTTCCCATTGGCCAAGGGTGGGTCCATGAGCCCGCACTTCCAGGTTGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS TCA 72 bp | CTGGAAAGGTCATTTGGCTTTTGCCTCCAAGAGACATaGGTTTTGTGGCCAAGTGCTCCAGCTCAGGGCATT | + |
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Preference number: 6 (lower is better) Translates to: LERSFGFCLQET*VLWPSAPAQGI Trigger: AATGCCCTGAGCTGGAGCACTTGGCCACAAAACTCATGTCTCTTGGAGGCAAAAGCCAAATGACCTTTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS CAA 90 bp | TGTCACGCTTGTGCCAAAGCTCCTGTCCCTATACAACATGGCTTCTaGCCAAATGTAGGTCACTTGATGCTCCATTTAATCCCATCAGTT | + |
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Preference number: 6 (lower is better) Translates to: CHACAKAPVPIQHGF*PNVGHLMLHLIPSV Trigger: AACTGATGGGATTAAATGGAGCATCAAGTGACCTACATTTGGCAAGAAGCCATGTTGTATAGGGACAGGAGCTTTGGCACAAGCGTGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666316.1 |
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| CDS TCA 72 bp | CTGGACTTCTGCTTGGTCACTCAAGGGCACATATCCTaGCCACATAAACATCAGGGATGTGATTTAACACAG | + |
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Preference number: 6 (lower is better) Translates to: LDFCLVTQGHIS*PHKHQGCDLTQ Trigger: CTGTGTTAAATCACATCCCTGATGTTTATGTGGTCAGGATATGTGCCCTTGAGTGACCAAGCAGAAGTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS TCA 72 bp | CCCAACTTCTGCTTGGTCACTCAAGGGCACATATCCTaGCCACATAAACATCAGGGATGTGATTTAACACAG | + |
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Preference number: 6 (lower is better) Translates to: PNFCLVTQGHIS*PHKHQGCDLTQ Trigger: CTGTGTTAAATCACATCCCTGATGTTTATGTGGTCAGGATATGTGCCCTTGAGTGACCAAGCAGAAGTTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666316.1 |
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| CDS CAA 90 bp | TTTCTCAGGCCCCAGAAGAAGACACTTGCTTTAAGTCTTTGTTCCTaGAAGTATGGTCTGTGTAACATCAGTATTGGCATCACCTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: FLRPQKKTLALSLCS*KYGLCNISIGITWE Trigger: CTCCCAGGTGATGCCAATACTGATGTTACACAGACCATACTTCAAGGAACAAAGACTTAAAGCAAGTGTCTTCTTCTGGGGCCTGAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS TCA 72 bp | ATGCACTTCTGCTTGGTCACTCAAGGGCACATATCCTaGCCACATAAACATCAGGGATGTGATTTAACACAG | + |
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Preference number: 6 (lower is better) Translates to: MHFCLVTQGHIS*PHKHQGCDLTQ Trigger: CTGTGTTAAATCACATCCCTGATGTTTATGTGGTCAGGATATGTGCCCTTGAGTGACCAAGCAGAAGTGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563061.2 |
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| CDS TCA 72 bp | ACTCACTTCTGCTTGGTCACTCAAGGGCACATATCCTaGCCACATAAACATCAGGGATGTGATTTAACACAG | + |
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Preference number: 6 (lower is better) Translates to: THFCLVTQGHIS*PHKHQGCDLTQ Trigger: CTGTGTTAAATCACATCCCTGATGTTTATGTGGTCAGGATATGTGCCCTTGAGTGACCAAGCAGAAGTGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655106.1 |
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| CDS GCA 72 bp | TGGGCTGTTGTTTCTCATGATGTAGGTCTGTGTCTTTaGACTGAAGCGCTAGTTATATATTCCAGTCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: WAVVSHDVGLCL*TEALVIYSSPL Trigger: GAGAGGACTGGAATATATAACTAGCGCTTCAGTGCAAAGACACAGACCTACATCATGAGAAACAACAGCCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563061.2 ENST00000661557.1 |
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| CDS CAA 72 bp | TGTGCCAAAGCTCCTGTCCCTATACAACATGGCTTCTaGCCAAATGTAGGTCACTTGATGCTCCATTTAATC | + |
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Preference number: 6 (lower is better) Translates to: CAKAPVPIQHGF*PNVGHLMLHLI Trigger: GATTAAATGGAGCATCAAGTGACCTACATTTGGCAAGAAGCCATGTTGTATAGGGACAGGAGCTTTGGCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666316.1 |
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| CDS TCA 72 bp | GCTAGAAACTCATGGGTAAGATTGTCTATGTGCTACTaGCACACTCAAAGTCCCCTAGGTTTCAATAACCCT | + |
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Preference number: 6 (lower is better) Translates to: ARNSWVRLSMCY*HTQSPLGFNNP Trigger: AGGGTTATTGAAACCTAGGGGACTTTGAGTGTGTCAGTAGCACATAGACAATCTTACCCATGAGTTTCTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666316.1 |
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| CDS TCA 72 bp | TTCATAGTTTCTGTGACAACTGATTTAAGTAGGCCTTaGCTAGTTTCCTGGAGGAGCAACTTGAACAGCACA | + |
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Preference number: 6 (lower is better) Translates to: FIVSVTTDLSRP*LVSWRSNLNST Trigger: TGTGCTGTTCAAGTTGCTCCTCCAGGAAACTAGTCAAGGCCTACTTAAATCAGTTGTCACAGAAACTATGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS CCA 72 bp | TCATCTGTTCCTGATATCCAACTATCAACATCTTCATaGCTCCATGATCCAGGATCATCTGAAGCAAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: SSVPDIQLSTSS*LHDPGSSEAKD Trigger: ATCCTTTGCTTCAGATGATCCTGGATCATGGAGCCATGAAGATGTTGATAGTTGGATATCAGGAACAGATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000655106.1 ENST00000664326.1 |
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| CDS CCA 72 bp | TATTTCATAAAGCTCTGCAAAAATTCCCAGTGGGACTaGTCACTAGTTATTCACACTAGCGGCCAACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: YFIKLCKNSQWD*SLVIHTSGQLD Trigger: ATCAAGTTGGCCGCTAGTGTGAATAACTAGTGACCAGTCCCACTGGGAATTTTTGCAGAGCTTTATGAAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS CCA 72 bp | GACATATATTTCATAAAGCTCTGCAAAAATTCCCAGTaGGACTGGTCACTAGTTATTCACACTAGCGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: DIYFIKLCKNSQ*DWSLVIHTSGQ Trigger: TTGGCCGCTAGTGTGAATAACTAGTGACCAGTCCCACTGGGAATTTTTGCAGAGCTTTATGAAATATATGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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| CDS CAA 72 bp | CCCTCCTGGCCCATAGGATTTTCACTGAGAAGTCTGTaGGCAGAGGAATTAAAGCTCCTTTATATGTTATTT | + |
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Preference number: 6 (lower is better) Translates to: PSWPIGFSLRSL*AEELKLLYMLF Trigger: AAATAACATATAAAGGAGCTTTAATTCCTCTGCCAACAGACTTCTCAGTGAAAATCCTATGGGCCAGGAGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563061.2 ENST00000661557.1 |
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| CDS CAA 90 bp | CTCATTCACTGCAATTTATTCTTATCAGCAACTTACGAGGTTCCCTaGGATAGAAAAATGGCATGCACCACGGTAGGATTATTTCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LIHCNLFLSATYEVP*DRKMACTTVGLFPL Trigger: AAGAGGAAATAATCCTACCGTGGTGCATGCCATTTTTCTATCCAAGGGAACCTCGTAAGTTGCTGATAAGAATAAATTGCAGTGAATGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000655106.1 ENST00000656744.1 |
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| CDS CAA 72 bp | AGTTTCCTGGAGGAGCAACTTGAACAGCACATTGTCTaGGTCCATGTTGTAACTATTTCTGTTTCATACTCT | + |
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Preference number: 6 (lower is better) Translates to: SFLEEQLEQHIV*VHVVTISVSYS Trigger: AGAGTATGAAACAGAAATAGTTACAACATGGACCAAGACAATGTGCTGTTCAAGTTGCTCCTCCAGGAAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664326.1 |
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