Pregenerated sensors for LINC02163 (Homo sapiens)
Ensembl gene IDs: ENSG00000251026Ensembl transcript IDs: ENST00000514769.1, ENST00000662211.1, ENST00000665271.1, ENST00000666145.1, ENST00000666455.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTTTGTGCTCAACTGAGAATTCTGCAACTCTCCATTATTAGCGGGTaGAGGAGTCCAAGGAGGCCTGCATATGGCCAGCCGGCTTCATTG | + |
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Preference number: 5 (lower is better) Translates to: LCAQLRILQLSIISG*RSPRRPAYGQPASL Trigger: CAATGAAGCCGGCTGGCCATATGCAGGCCTCCTTGGACTCCTTCACCCGCTAATAATGGAGAGTTGCAGAATTCTCAGTTGAGCACAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS TCA 90 bp | AAGAAATGCAAATGTCAAGTTGAATGGAGAGTGAAGAGCCTGGTTTaGCCATACCAGTGTGTCGTGGTTTTGCATGTTCTGAGGCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: KKCKCQVEWRVKSLV*PYQCVVVLHVLRLK Trigger: TTTCAGCCTCAGAACATGCAAAACCACGACACACTGGTATGGTCAAACCAGGCTCTTCACTCTCCATTCAACTTGACATTTGCATTTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000665271.1 ENST00000666455.1 |
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| CDS CCA 90 bp | TTGTGTCTTAGCACACCTCCTTTATTCACCTCCCTTCTCACAACATaGATTAATAACACTAGGGTCCGCAGCTTTATTCTTGAAGTCAGT | + |
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Preference number: 5 (lower is better) Translates to: LCLSTPPLFTSLLTT*INNTRVRSFILEVS Trigger: ACTGACTTCAAGAATAAAGCTGCGGACCCTAGTGTTATTAATCCATGTTGTGAGAAGGGAGGTGAATAAAGGAGGTGTGCTAAGACACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS CCA 90 bp | CATACCTCTATTGCCTTCATAGTCAGTCAATTCAAACCAGAACACTaGGGCTTCTTGCTGTTCTCTGAACGTAAAAGACTCATTTTCACA | + |
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Preference number: 5 (lower is better) Translates to: HTSIAFIVSQFKPEH*GFLLFSERKRLIFT Trigger: TGTGAAAATGAGTCTTTTACGTTCAGAGAACAGCAAGAAGCCCCAGTGTTCTGGTTTGAATTGACTGACTATGAAGGCAATAGAGGTATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666145.1 |
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| CDS GCA 90 bp | ATTCTTAGCCTTCCTCCCAGATCTAGAGCTCAGTACTTATATAACTaGAATAATCTCTCTACCTACACTTCTTCCCATCAACATTCATTT | + |
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Preference number: 5 (lower is better) Translates to: ILSLPPRSRAQYLYN*NNLSTYTSSHQHSF Trigger: AAATGAATGTTGATGGGAAGAAGTGTAGGTAGAGAGATTATTGCAGTTATATAAGTACTGAGCTCTAGATCTGGGAGGAAGGCTAAGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666145.1 |
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| CDS TCA 72 bp | GAGGCTGGAGGAGGGGCACCCGCCATTGCCCAGGCTTaGTTAGGTAAACAAAGCAGCCAGGAAGCTCGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: EAGGGAPAIAQA*LGKQSSQEARS Trigger: ACTTCGAGCTTCCTGGCTGCTTTGTTTACCTAATCAAGCCTGGGCAATGGCGGGTGCCCCTCCTCCAGCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665271.1 |
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| CDS CCA 72 bp | TTAGGTAAACAAAGCAGCCAGGAAGCTCGAAGTGGGTaGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LGKQSSQEARSG*SPPQLKEACLL Trigger: AAGCAGGCAGGCCTCCTTGAGCTGTGGTGGGCTCCACCCACTTCGAGCTTCCTGGCTGCTTTGTTTACCTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665271.1 |
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| CDS TCA 72 bp | CAACTGAGAATTCTGCAACTCTCCATTATTAGCGGGTaGAGGAGTCCAAGGAGGCCTGCATATGGCCAGCCG | + |
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Preference number: 6 (lower is better) Translates to: QLRILQLSIISG*RSPRRPAYGQP Trigger: CGGCTGGCCATATGCAGGCCTCCTTGGACTCCTTCACCCGCTAATAATGGAGAGTTGCAGAATTCTCAGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS CAA 72 bp | AGTCCAAGGAGGCCTGCATATGGCCAGCCGGCTTCATaGAATCATCCTGTGACTGCAACAGCAGATTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: SPRRPAYGQPAS*NHPVTATADLC Trigger: ACACAAATCTGCTGTTGCAGTCACAGGATGATTCAATGAAGCCGGCTGGCCATATGCAGGCCTCCTTGGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS CAA 72 bp | AGGCCTCAGGAAACACTAGGGTCCGCAGCTTTATTCTaGAAGTCAGTGAGACCAAGAACCCACAGGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: RPQETLGSAALF*KSVRPRTHRNE Trigger: TTCATTCCTGTGGGTTCTTGGTCTCACTGACTTCAAGAATAAAGCTGCGGACCCTAGTGTTTCCTGAGGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514769.1 |
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| CDS CAA 90 bp | CTTCTAGTGAGGCCTCAGGAAACACTAGGGTCCGCAGCTTTATTCTaGAAGTCAGTGAGACCAAGAACCCACAGGAATGAATCAATTCTG | + |
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Preference number: 6 (lower is better) Translates to: LLVRPQETLGSAALF*KSVRPRTHRNESIL Trigger: CAGAATTGATTCATTCCTGTGGGTTCTTGGTCTCACTGACTTCAAGAATAAAGCTGCGGACCCTAGTGTTTCCTGAGGCCTCACTAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514769.1 |
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| CDS CAA 72 bp | ATCTTGTTGCTACCACTAGGGTCCGCAGCTTTATTCTaGAAGTCAGTGAGACCAAGAACCCACAGGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: ILLLPLGSAALF*KSVRPRTHRNE Trigger: TTCATTCCTGTGGGTTCTTGGTCTCACTGACTTCAAGAATAAAGCTGCGGACCCTAGTGGTAGCAACAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666145.1 |
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| CDS CAA 90 bp | GTACACTGCCTTCTAAACAGCATGCAAATACAACACGTTTCTGCCTaGAAGATGTTTGAAACTGGAAAATCGGGTCACTCCCACCCGAAT | + |
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Preference number: 6 (lower is better) Translates to: VHCLLNSMQIQHVSA*KMFETGKSGHSHPN Trigger: ATTCGGGTGGGAGTGACCCGATTTTCCAGTTTCAAACATCTTCAAGGCAGAAACGTGTTGTATTTGCATGCTGTTTAGAAGGCAGTGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000514769.1 ENST00000662211.1 ENST00000665271.1 ENST00000666145.1 ENST00000666455.1 |
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| CDS CAA 90 bp | CAACAAGTCATCTTGTTGCTACCACTAGGGTCCGCAGCTTTATTCTaGAAGTCAGTGAGACCAAGAACCCACAGGAATGAATCAATTCTG | + |
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Preference number: 6 (lower is better) Translates to: QQVILLLPLGSAALF*KSVRPRTHRNESIL Trigger: CAGAATTGATTCATTCCTGTGGGTTCTTGGTCTCACTGACTTCAAGAATAAAGCTGCGGACCCTAGTGGTAGCAACAAGATGACTTGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666145.1 |
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| CDS CCA 72 bp | AGCACACCTCCTTTATTCACCTCCCTTCTCACAACATaGATTAATAACACTAGGGTCCGCAGCTTTATTCTT | + |
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Preference number: 6 (lower is better) Translates to: STPPLFTSLLTT*INNTRVRSFIL Trigger: AAGAATAAAGCTGCGGACCCTAGTGTTATTAATCCATGTTGTGAGAAGGGAGGTGAATAAAGGAGGTGTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS CCA 72 bp | ATTGCCTTCATAGTCAGTCAATTCAAACCAGAACACTaGGGCTTCTTGCTGTTCTCTGAACGTAAAAGACTC | + |
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Preference number: 6 (lower is better) Translates to: IAFIVSQFKPEH*GFLLFSERKRL Trigger: GAGTCTTTTACGTTCAGAGAACAGCAAGAAGCCCCAGTGTTCTGGTTTGAATTGACTGACTATGAAGGCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666145.1 |
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| CDS CAA 72 bp | CATGGATTAATAACACTAGGGTCCGCAGCTTTATTCTaGAAGTCAGTGAGACCAAGAACCCACAGGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: HGLITLGSAALF*KSVRPRTHRNE Trigger: TTCATTCCTGTGGGTTCTTGGTCTCACTGACTTCAAGAATAAAGCTGCGGACCCTAGTGTTATTAATCCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS TCA 72 bp | CTAGCTGAAGGAATAATTGGCAGTAGCATGTGCAAGTaGTCAGTCACACCTTTTGAATCAGTTCACTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LAEGIIGSSMCK*SVTPFESVHSL Trigger: CAAAGAGTGAACTGATTCAAAAGGTGTGACTGATCACTTGCACATGCTACTGCCAATTATTCCTTCAGCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS CAA 72 bp | CTTCTAAACAGCATGCAAATACAACACGTTTCTGCCTaGAAGATGTTTGAAACTGGAAAATCGGGTCACTCC | + |
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Preference number: 6 (lower is better) Translates to: LLNSMQIQHVSA*KMFETGKSGHS Trigger: GGAGTGACCCGATTTTCCAGTTTCAAACATCTTCAAGGCAGAAACGTGTTGTATTTGCATGCTGTTTAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000514769.1 ENST00000662211.1 ENST00000665271.1 ENST00000666145.1 ENST00000666455.1 |
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| CDS CAA 72 bp | TTGGCAGTAGCATGTGCAAGTGATCAGTCACACCTTTaGAATCAGTTCACTCTTTGTGCTCAACTGAGAATT | + |
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Preference number: 6 (lower is better) Translates to: LAVACASDQSHL*NQFTLCAQLRI Trigger: AATTCTCAGTTGAGCACAAAGAGTGAACTGATTCAAAAGGTGTGACTGATCACTTGCACATGCTACTGCCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS CAA 90 bp | TTCTCACAACATGGATTAATAACACTAGGGTCCGCAGCTTTATTCTaGAAGTCAGTGAGACCAAGAACCCACAGGAATGAATCAATTCTG | + |
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Preference number: 6 (lower is better) Translates to: FSQHGLITLGSAALF*KSVRPRTHRNESIL Trigger: CAGAATTGATTCATTCCTGTGGGTTCTTGGTCTCACTGACTTCAAGAATAAAGCTGCGGACCCTAGTGTTATTAATCCATGTTGTGAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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| CDS TCA 72 bp | ATTCTTGAAGTCAGTGAGACCAAGAACCCACAGGAATaGATCAATTCTGGACACAACAGCATCAAAAGATAT | + |
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Preference number: 6 (lower is better) Translates to: ILEVSETKNPQE*INSGHNSIKRY Trigger: ATATCTTTTGATGCTGTTGTGTCCAGAATTGATTCATTCCTGTGGGTTCTTGGTCTCACTGACTTCAAGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000514769.1 ENST00000662211.1 ENST00000666145.1 |
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| CDS TCA 72 bp | CTAGGTTCAGTTAGTACATTTTACGGAGTTCAAAACTaGAATTTAGGAAGTCTTATTACCACATGTGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LGSVSTFYGVQN*NLGSLITTCVL Trigger: AAGGACACATGTGGTAATAAGACTTCCTAAATTTCAGTTTTGAACTCCGTAAAATGTACTAACTGAACCTAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662211.1 |
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