Pregenerated sensors for LINC02160 (Homo sapiens)
Ensembl gene IDs: ENSG00000251443Ensembl transcript IDs: ENST00000503577.1, ENST00000661759.1, ENST00000667183.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATGGTTGACCAGGAGCACTGGCACACACCTATAATCTCAGCACTTTaGGAAGCTGAGGTGGGCGGTTCACGAGGTCAAGAGATTGAGACC | + |
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Preference number: 5 (lower is better) Translates to: MVDQEHWHTPIISAL*EAEVGGSRGQEIET Trigger: GGTCTCAATCTCTTGACCTCGTGAACCGCCCACCTCAGCTTCCCAAAGTGCTGAGATTATAGGTGTGTGCCAGTGCTCCTGGTCAACCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661759.1 |
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| CDS CCA 90 bp | GGATTCAGTTCTAAAGAGGACAGGCTACATAGTGTGACTTCTGTCTaGGTAGAAAGGATTCCTCCATCTCCATCAGGCATCGGGACATGC | + |
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Preference number: 5 (lower is better) Translates to: GFSSKEDRLHSVTSV*VERIPPSPSGIGTC Trigger: GCATGTCCCGATGCCTGATGGAGATGGAGGAATCCTTTCTACCCAGACAGAAGTCACACTATGTAGCCTGTCCTCTTTAGAACTGAATCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS GCA 90 bp | GTCTGGGTAGAAAGGATTCCTCCATCTCCATCAGGCATCGGGACATaGAGAGGCTTCAGCCTAACCTGCAGAAATACATATCTCAATAAG | + |
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Preference number: 5 (lower is better) Translates to: VWVERIPPSPSGIGT*RGFSLTCRNTYLNK Trigger: CTTATTGAGATATGTATTTCTGCAGGTTAGGCTGAAGCCTCTGCATGTCCCGATGCCTGATGGAGATGGAGGAATCCTTTCTACCCAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667183.1 |
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| CDS GCA 90 bp | GCCAGCCTTTCCTCCATATATTCCACAGGGGACATCCTCTTCAGCTaGCATGTAGTCTTCTGGGATCTAATTATGATGTCTCTTGGAATC | + |
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Preference number: 5 (lower is better) Translates to: ASLSSIYSTGDILFS*HVVFWDLIMMSLGI Trigger: GATTCCAAGAGACATCATAATTAGATCCCAGAAGACTACATGGCAGCTGAAGAGGATGTCCCCTGTGGAATATATGGAGGAAAGGCTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS GCA 90 bp | CCATCTCCATCAGGCATCGGGACATGCAGAGGCTTCAGCCTAACCTaGAGAAATACATATCTCAATAAGACTGAAGTCTCCTTCCTAGTT | + |
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Preference number: 5 (lower is better) Translates to: PSPSGIGTCRGFSLT*RNTYLNKTEVSFLV Trigger: AACTAGGAAGGAGACTTCAGTCTTATTGAGATATGTATTTCTGCAGGTTAGGCTGAAGCCTCTGCATGTCCCGATGCCTGATGGAGATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667183.1 |
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| CDS CCA 90 bp | TGCCATGTAGTCTTCTGGGATCTAATTATGATGTCTCTTGGAATCTaGCCCGCATACAAGAATTCAAGCTGGTTTTCCAGGGTGGAGACC | + |
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Preference number: 5 (lower is better) Translates to: CHVVFWDLIMMSLGI*PAYKNSSWFSRVET Trigger: GGTCTCCACCCTGGAAAACCAGCTTGAATTCTTGTATGCGGGCCAGATTCCAAGAGACATCATAATTAGATCCCAGAAGACTACATGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS CCA 90 bp | CTTCAGCTGCCATGTAGTCTTCTGGGATCTAATTATGATGTCTCTTaGAATCTGGCCCGCATACAAGAATTCAAGCTGGTTTTCCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: LQLPCSLLGSNYDVS*NLARIQEFKLVFQG Trigger: ACCCTGGAAAACCAGCTTGAATTCTTGTATGCGGGCCAGATTCCAAGAGACATCATAATTAGATCCCAGAAGACTACATGGCAGCTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS CCA 90 bp | ATATATTCCACAGGGGACATCCTCTTCAGCTGCCATGTAGTCTTCTaGGATCTAATTATGATGTCTCTTGGAATCTGGCCCGCATACAAG | + |
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Preference number: 5 (lower is better) Translates to: IYSTGDILFSCHVVF*DLIMMSLGIWPAYK Trigger: CTTGTATGCGGGCCAGATTCCAAGAGACATCATAATTAGATCCCAGAAGACTACATGGCAGCTGAAGAGGATGTCCCCTGTGGAATATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS CCA 90 bp | ATTATGATGTCTCTTGGAATCTGGCCCGCATACAAGAATTCAAGCTaGTTTTCCAGGGTGGAGACCATGAAGAAATCCCAATCGGATTCA | + |
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Preference number: 5 (lower is better) Translates to: IMMSLGIWPAYKNSS*FSRVETMKKSQSDS Trigger: TGAATCCGATTGGGATTTCTTCATGGTCTCCACCCTGGAAAACCAGCTTGAATTCTTGTATGCGGGCCAGATTCCAAGAGACATCATAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS GCA 90 bp | AACTCACATACAGTCTCTCAGATACCGATGAGGCCTCTGAGACTATaGTGGCATTTTAGATCAATAGTGGAAGCACAAATGGTTCCAATG | + |
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Preference number: 5 (lower is better) Translates to: NSHTVSQIPMRPLRL*WHFRSIVEAQMVPM Trigger: CATTGGAACCATTTGTGCTTCCACTATTGATCTAAAATGCCAGCATAGTCTCAGAGGCCTCATCGGTATCTGAGAGACTGTATGTGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661759.1 |
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| CDS TCA 90 bp | GTGGTGATGGGGAGTATTGAATGTTTCCAAGCCAGTACGGCACACTaGATAACTGGATCAGAGTTCTCTTTTGGTGGGAATAATATTAAT | + |
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Preference number: 5 (lower is better) Translates to: VVMGSIECFQASTAH*ITGSEFSFGGNNIN Trigger: ATTAATATTATTCCCACCAAAAGAGAACTCTGATCCAGTTATTCAGTGTGCCGTACTGGCTTGGAAACATTCAATACTCCCCATCACCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000667183.1 |
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| CDS GCA 90 bp | TACATGTTGAAGACTTGTAGAGTAATCATGAGTTTCACCTTCTCATaGCAGGTGACTCTTCTTTATGGGTATAGTCCTGTATTTGGTCTT | + |
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Preference number: 5 (lower is better) Translates to: YMLKTCRVIMSFTFS*QVTLLYGYSPVFGL Trigger: AAGACCAAATACAGGACTATACCCATAAAGAAGAGTCACCTGGCATGAGAAGGTGAAACTCATGATTACTCTACAAGTCTTCAACATGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667183.1 |
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| CDS GCA 72 bp | GAAAGGATTCCTCCATCTCCATCAGGCATCGGGACATaGAGAGGCTTCAGCCTAACCTCTTTTGGTTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: ERIPPSPSGIGT*RGFSLTSFGCL Trigger: GAGGCAACCAAAAGAGGTTAGGCTGAAGCCTCTGCATGTCCCGATGCCTGATGGAGATGGAGGAATCCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661759.1 |
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| CDS GCA 72 bp | GAAAGGATTCCTCCATCTCCATCAGGCATCGGGACATaGAGAGGCTTCAGCCTAACCTGCAGAAATACATAT | + |
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Preference number: 6 (lower is better) Translates to: ERIPPSPSGIGT*RGFSLTCRNTY Trigger: ATATGTATTTCTGCAGGTTAGGCTGAAGCCTCTGCATGTCCCGATGCCTGATGGAGATGGAGGAATCCTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000503577.1 ENST00000667183.1 |
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| CDS CCA 72 bp | ACAGGGGACATCCTCTTCAGCTGCCATGTAGTCTTCTaGGATCTAATTATGATGTCTCTTGGAATCTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: TGDILFSCHVVF*DLIMMSLGIWP Trigger: GGGCCAGATTCCAAGAGACATCATAATTAGATCCCAGAAGACTACATGGCAGCTGAAGAGGATGTCCCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS CCA 72 bp | TCTAAAGAGGACAGGCTACATAGTGTGACTTCTGTCTaGGTAGAAAGGATTCCTCCATCTCCATCAGGCATC | + |
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Preference number: 6 (lower is better) Translates to: SKEDRLHSVTSV*VERIPPSPSGI Trigger: GATGCCTGATGGAGATGGAGGAATCCTTTCTACCCAGACAGAAGTCACACTATGTAGCCTGTCCTCTTTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS TCA 72 bp | GGGAGTATTGAATGTTTCCAAGCCAGTACGGCACACTaGATAACTGGATCAGAGTTCTCTTTTGGTGGGAAT | + |
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Preference number: 6 (lower is better) Translates to: GSIECFQASTAH*ITGSEFSFGGN Trigger: ATTCCCACCAAAAGAGAACTCTGATCCAGTTATTCAGTGTGCCGTACTGGCTTGGAAACATTCAATACTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667183.1 |
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| CDS GCA 72 bp | TCCTCCATATATTCCACAGGGGACATCCTCTTCAGCTaGCATGTAGTCTTCTGGGATCTAATTATGATGTCT | + |
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Preference number: 6 (lower is better) Translates to: SSIYSTGDILFS*HVVFWDLIMMS Trigger: AGACATCATAATTAGATCCCAGAAGACTACATGGCAGCTGAAGAGGATGTCCCCTGTGGAATATATGGAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS GCA 72 bp | ACAGTCTCTCAGATACCGATGAGGCCTCTGAGACTATaGTGGCATTTTAGATCAATAGTGGAAGCACAAATG | + |
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Preference number: 6 (lower is better) Translates to: TVSQIPMRPLRL*WHFRSIVEAQM Trigger: CATTTGTGCTTCCACTATTGATCTAAAATGCCAGCATAGTCTCAGAGGCCTCATCGGTATCTGAGAGACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661759.1 |
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| CDS CCA 72 bp | GTCTTCTGGGATCTAATTATGATGTCTCTTGGAATCTaGCCCGCATACAAGAATTCAAGCTGGTTTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: VFWDLIMMSLGI*PAYKNSSWFSR Trigger: CCTGGAAAACCAGCTTGAATTCTTGTATGCGGGCCAGATTCCAAGAGACATCATAATTAGATCCCAGAAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS CCA 72 bp | CCATGTAGTCTTCTGGGATCTAATTATGATGTCTCTTaGAATCTGGCCCGCATACAAGAATTCAAGCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: PCSLLGSNYDVS*NLARIQEFKLV Trigger: AACCAGCTTGAATTCTTGTATGCGGGCCAGATTCCAAGAGACATCATAATTAGATCCCAGAAGACTACATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000503577.1 ENST00000661759.1 ENST00000667183.1 |
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| CDS TCA 72 bp | ATTCATGGATCACAGCACAGCCATATTTCTGGGAGATaGAAGCATCAATTTCGTTGTTATTGTGGCTTTAGA | + |
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Preference number: 6 (lower is better) Translates to: IHGSQHSHISGR*KHQFRCYCGFR Trigger: TCTAAAGCCACAATAACAACGAAATTGATGCTTTCATCTCCCAGAAATATGGCTGTGCTGTGATCCATGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000503577.1 ENST00000667183.1 |
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