Pregenerated sensors for LINC02157 (Homo sapiens)
Ensembl gene IDs: ENSG00000259763Ensembl transcript IDs: ENST00000558885.1, ENST00000650320.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACCCTGTCACCCAGGCTGGCGTGCAACTATGTGATAGTAGCTCACTaGAGTCTTATACTCCCAGGCTCGAGAGCTCCTCACACCTGTAAT | + |
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Preference number: 5 (lower is better) Translates to: TLSPRLACNYVIVAH*SLILPGSRAPHTCN Trigger: ATTACAGGTGTGAGGAGCTCTCGAGCCTGGGAGTATAAGACTGCAGTGAGCTACTATCACATAGTTGCACGCCAGCCTGGGTGACAGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650320.1 |
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| CDS CCA 90 bp | TCTGAGGTCCTAGAACCAGCATTTTGTTCATCTGTCTGCTACCCATaGAAATGTACTTCAAAAGAATGGAGAAAGCGTGGACTCTCTCAA | + |
|
Preference number: 5 (lower is better) Translates to: SEVLEPAFCSSVCYP*KCTSKEWRKRGLSQ Trigger: TTGAGAGAGTCCACGCTTTCTCCATTCTTTTGAAGTACATTTCCATGGGTAGCAGACAGATGAACAAAATGCTGGTTCTAGGACCTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650320.1 |
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| CDS GCA 90 bp | TACAGTATATCTGAGGTCCTAGAACCAGCATTTTGTTCATCTGTCTaGTACCCATGGAAATGTACTTCAAAAGAATGGAGAAAGCGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: YSISEVLEPAFCSSV*YPWKCTSKEWRKRG Trigger: TCCACGCTTTCTCCATTCTTTTGAAGTACATTTCCATGGGTAGCAGACAGATGAACAAAATGCTGGTTCTAGGACCTCAGATATACTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650320.1 |
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| CDS CAA 72 bp | CACATTAGACCATGTGCCATGCCACCAATTCATGTCTaGGGCCTCCCATGGCTAAACTGTCAGGAGATTTAT | + |
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Preference number: 6 (lower is better) Translates to: HIRPCAMPPIHV*GLPWLNCQEIY Trigger: ATAAATCTCCTGACAGTTTAGCCATGGGAGGCCCAAGACATGAATTGGTGGCATGGCACATGGTCTAATGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000558885.1 ENST00000650320.1 |
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| CDS CCA 72 bp | TCTGTCTGCTACCCATGGAAATGTACTTCAAAAGAATaGAGAAAGCGTGGACTCTCTCAAGATGTATTTAGA | + |
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Preference number: 6 (lower is better) Translates to: SVCYPWKCTSKE*RKRGLSQDVFR Trigger: TCTAAATACATCTTGAGAGAGTCCACGCTTTCTCCATTCTTTTGAAGTACATTTCCATGGGTAGCAGACAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650320.1 |
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| CDS CAA 72 bp | GAGAAAGGATTCGGAATGACAGTGGAACTTAGCTGTTaGTTTGAGAATCTGCAGTGTGATAATGACACTGTT | + |
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Preference number: 6 (lower is better) Translates to: EKGFGMTVELSC*FENLQCDNDTV Trigger: AACAGTGTCATTATCACACTGCAGATTCTCAAACAAACAGCTAAGTTCCACTGTCATTCCGAATCCTTTCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650320.1 |
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