Pregenerated sensors for LINC02148 (Homo sapiens)
Ensembl gene IDs: ENSG00000250427Ensembl transcript IDs: ENST00000503877.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTGTTTGCTCTGTCCTTACATGGCCTTTCCTCTCCCAGATGGGGTaGCGATCGGGCAGAGACACTCATCAGTTCCCAGACGGGGTCGCG | + |
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Preference number: 5 (lower is better) Translates to: PVCSVLTWPFLSQMG*RSGRDTHQFPDGVA Trigger: CGCGACCCCGTCTGGGAACTGATGAGTGTCTCTGCCCGATCGCCACCCCATCTGGGAGAGGAAAGGCCATGTAAGGACAGAGCAAACAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 90 bp | AGTTGCCTGTTTGCTCTGTCCTTACATGGCCTTTCCTCTCCCAGATaGGGTGGCGATCGGGCAGAGACACTCATCAGTTCCCAGACGGGG | + |
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Preference number: 5 (lower is better) Translates to: SCLFALSLHGLSSPR*GGDRAETLISSQTG Trigger: CCCCGTCTGGGAACTGATGAGTGTCTCTGCCCGATCGCCACCCCATCTGGGAGAGGAAAGGCCATGTAAGGACAGAGCAAACAGGCAACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 90 bp | CAGTCTGGTGTGCAAGTGGCCCAAGTTAGCAGTGAAAATCCTGCATaGTCCTGGGAAGTTAGGCCTCACCCTCTTCTCCACCCTCACCTG | + |
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Preference number: 5 (lower is better) Translates to: QSGVQVAQVSSENPA*SWEVRPHPLLHPHL Trigger: CAGGTGAGGGTGGAGAAGAGGGTGAGGCCTAACTTCCCAGGACCATGCAGGATTTTCACTGCTAACTTGGGCCACTTGCACACCAGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 90 bp | CTGTCTCCCATACCCACCATTTCCAGCTCCAGTCTGGTGTGCAAGTaGCCCAAGTTAGCAGTGAAAATCCTGCATGGTCCTGGGAAGTTA | + |
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Preference number: 5 (lower is better) Translates to: LSPIPTISSSSLVCK*PKLAVKILHGPGKL Trigger: TAACTTCCCAGGACCATGCAGGATTTTCACTGCTAACTTGGGCCACTTGCACACCAGACTGGAGCTGGAAATGGTGGGTATGGGAGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS GCA 90 bp | CCTGTATCACCTTCCTCTTCACTCTTAGCACCCCAATCACACAGCTaGCACTTGGTTTCTCTAATAAACTGTGCTCTGTCTCACCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: PVSPSSSLLAPQSHS*HLVSLINCALSHPR Trigger: CCTGGGGTGAGACAGAGCACAGTTTATTAGAGAAACCAAGTGGCAGCTGTGTGATTGGGGTGCTAAGAGTGAAGAGGAAGGTGATACAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 72 bp | TCTGTCCTTACATGGCCTTTCCTCTCCCAGATGGGGTaGCGATCGGGCAGAGACACTCATCAGTTCCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SVLTWPFLSQMG*RSGRDTHQFPD Trigger: GTCTGGGAACTGATGAGTGTCTCTGCCCGATCGCCACCCCATCTGGGAGAGGAAAGGCCATGTAAGGACAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 72 bp | TTTGCTCTGTCCTTACATGGCCTTTCCTCTCCCAGATaGGGTGGCGATCGGGCAGAGACACTCATCAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: FALSLHGLSSPR*GGDRAETLISS Trigger: GGAACTGATGAGTGTCTCTGCCCGATCGCCACCCCATCTGGGAGAGGAAAGGCCATGTAAGGACAGAGCAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 72 bp | GTGGCCCAAGTTAGCAGTGAAAATCCTGCATGGTCCTaGGAAGTTAGGCCTCACCCTCTTCTCCACCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: VAQVSSENPAWS*EVRPHPLLHPH Trigger: GTGAGGGTGGAGAAGAGGGTGAGGCCTAACTTCCCAGGACCATGCAGGATTTTCACTGCTAACTTGGGCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 72 bp | GTGCAAGTGGCCCAAGTTAGCAGTGAAAATCCTGCATaGTCCTGGGAAGTTAGGCCTCACCCTCTTCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: VQVAQVSSENPA*SWEVRPHPLLH Trigger: GTGGAGAAGAGGGTGAGGCCTAACTTCCCAGGACCATGCAGGATTTTCACTGCTAACTTGGGCCACTTGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS GCA 72 bp | TCTAATAAACTGTGCTCTGTCTCACCCCAGGGCCTTTaGACAAGCAATTGGCCCTATCTGGGACCATTCCCC | + |
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Preference number: 6 (lower is better) Translates to: SNKLCSVSPQGL*TSNWPYLGPFP Trigger: GGGGAATGGTCCCAGATAGGGCCAATTGCTTGTGCAAAGGCCCTGGGGTGAGACAGAGCACAGTTTATTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS GCA 72 bp | TCTCCCATACCCACCATTTCCAGCTCCAGTCTGGTGTaGAAGTGGCCCAAGTTAGCAGTGAAAATCCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: SPIPTISSSSLV*KWPKLAVKILH Trigger: ATGCAGGATTTTCACTGCTAACTTGGGCCACTTGCACACCAGACTGGAGCTGGAAATGGTGGGTATGGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 72 bp | ATACCCACCATTTCCAGCTCCAGTCTGGTGTGCAAGTaGCCCAAGTTAGCAGTGAAAATCCTGCATGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: IPTISSSSLVCK*PKLAVKILHGP Trigger: AGGACCATGCAGGATTTTCACTGCTAACTTGGGCCACTTGCACACCAGACTGGAGCTGGAAATGGTGGGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CCA 72 bp | GAAATCTGGTTCTCTCCTGGGCTTCCCTATCATGAATaGTCCCGTGACCTACCAGCTATGCAAGTGGACATC | + |
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Preference number: 6 (lower is better) Translates to: EIWFSPGLPYHE*SRDLPAMQVDI Trigger: GATGTCCACTTGCATAGCTGGTAGGTCACGGGACCATTCATGATAGGGAAGCCCAGGAGAGAACCAGATTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS TCA 72 bp | GATCAAGATCAAGGTGCCATGAAGGTTGATATCTGGTaGGGCCTCTCTTCCTGGTTTGCAGACAGTTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: DQDQGAMKVDIW*GLSSWFADSCL Trigger: CAGGCAACTGTCTGCAAACCAGGAAGAGAGGCCTCACCAGATATCAACCTTCATGGCACCTTGATCTTGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS TCA 72 bp | TTCTCACAGTCTGGAAAGATCAAGATCAAGGTGCCATaGAGGTTGATATCTGGTGAGGCCTCTCTTCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: FSQSGKIKIKVP*RLISGEASLPG Trigger: ACCAGGAAGAGAGGCCTCACCAGATATCAACCTTCATGGCACCTTGATCTTGATCTTTCCAGACTGTGAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS GCA 72 bp | CCTTCCTCTTCACTCTTAGCACCCCAATCACACAGCTaGCACTTGGTTTCTCTAATAAACTGTGCTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: PSSSLLAPQSHS*HLVSLINCALS Trigger: AGACAGAGCACAGTTTATTAGAGAAACCAAGTGGCAGCTGTGTGATTGGGGTGCTAAGAGTGAAGAGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CAA 72 bp | CCTACCAGCTATGCAAGTGGACATCTAGAGGTTATTTaGATCTCTGTCTCCCATACCCACCATTTCCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: PTSYASGHLEVI*ISVSHTHHFQL Trigger: GAGCTGGAAATGGTGGGTATGGGAGACAGAGATCAAAATAACCTCTAGATGTCCACTTGCATAGCTGGTAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CAA 90 bp | CAAAAGCACAACAAGCTTGACACGTGCAAATTCATGACTTTCTCTTaGAAATCTGGTTCTCTCCTGGGCTTCCCTATCATGAATGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: QKHNKLDTCKFMTFS*KSGSLLGFPIMNGP Trigger: GGGACCATTCATGATAGGGAAGCCCAGGAGAGAACCAGATTTCAAAGAGAAAGTCATGAATTTGCACGTGTCAAGCTTGTTGTGCTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS GCA 72 bp | TTTGTGTGGTTACTTGATGTATTAGTCTGTTTGGGCTaGCGTAACAAAATACTACAGACGGAGTTGGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: FVWLLDVLVCLG*RNKILQTELEG Trigger: GCCCTCCAACTCCGTCTGTAGTATTTTGTTACGGCAGCCCAAACAGACTAATACATCAAGTAACCACACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS TCA 72 bp | AGGTCCTTGATGGTTTTTAAGAGTGTAAAGGGGTCTTaGAACTCAAAGTCTGAGAATGACTGTCCCGAATCA | + |
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Preference number: 6 (lower is better) Translates to: RSLMVFKSVKGS*NSKSENDCPES Trigger: TGATTCGGGACAGTCATTCTCAGACTTTGAGTTTCAAGACCCCTTTACACTCTTAAAAACCATCAAGGACCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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| CDS CAA 72 bp | ATATGGACAGATATAACCCACATAAACAGAAGCTCTTaGAGGTCCTTGATGGTTTTTAAGAGTGTAAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: IWTDITHINRSS*RSLMVFKSVKG Trigger: CCCCTTTACACTCTTAAAAACCATCAAGGACCTCAAAGAGCTTCTGTTTATGTGGGTTATATCTGTCCATAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000503877.1 |
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