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Pregenerated sensors for LINC02143 (Homo sapiens)

Ensembl gene IDs: ENSG00000253236

Ensembl transcript IDs: ENST00000519929.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CTGTCACCAGCACACTCTTCAAAGACCAGTTGCAATTCGACCTTTTaGTCAGAAGAAATGCACCAACCTGATGCTGCACTTGCTCTTCCA +
Preference number: 5 (lower is better)
Translates to: LSPAHSSKTSCNSTF*SEEMHQPDAALALP
Trigger: TGGAAGAGCAAGTGCAGCATCAGGTTGGTGCATTTCTTCTGATCAAAAGGTCGAATTGCAACTGGTCTTTGAAGAGTGTGCTGGTGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS TCA 90 bp CAACTTCATTCAACTTGCTCTCTTCTTTACAGTGCTGGTTTAATTTaGCAGCAGTCTAGGGCCAGTCCAGGAGCTACTGCAAAGGTTGCA +
Preference number: 5 (lower is better)
Translates to: QLHSTCSLLYSAGLI*QQSRASPGATAKVA
Trigger: TGCAACCTTTGCAGTAGCTCCTGGACTGGCCCTAGACTGCTGTCAAATTAAACCAGCACTGTAAAGAAGAGAGCAAGTTGAATGAAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS CCA 90 bp GTGAAGCCTTCGTCCTCTCTCAGTACCTGGCACATACCGGTATTATaGTCATTTCAGCCCGTTGTGTTGTCATCTTTTTCTGCTTTTCTT +
Preference number: 5 (lower is better)
Translates to: VKPSSSLSTWHIPVL*SFQPVVLSSFSAFL
Trigger: AAGAAAAGCAGAAAAAGATGACAACACAACGGGCTGAAATGACCATAATACCGGTATGTGCCAGGTACTGAGAGAGGACGAAGGCTTCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS GCA 90 bp ACTCTTCAAAGACCAGTTGCAATTCGACCTTTTGATCAGAAGAAATaGACCAACCTGATGCTGCACTTGCTCTTCCAGTTGTTCCTGTTA +
Preference number: 5 (lower is better)
Translates to: TLQRPVAIRPFDQKK*TNLMLHLLFQLFLL
Trigger: TAACAGGAACAACTGGAAGAGCAAGTGCAGCATCAGGTTGGTGCATTTCTTCTGATCAAAAGGTCGAATTGCAACTGGTCTTTGAAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS TCA 90 bp GACCAGTTGCAATTCGACCTTTTGATCAGAAGAAATGCACCAACCTaGTGCTGCACTTGCTCTTCCAGTTGTTCCTGTTATATTATTTAT +
Preference number: 5 (lower is better)
Translates to: DQLQFDLLIRRNAPT*CCTCSSSCSCYIIY
Trigger: ATAAATAATATAACAGGAACAACTGGAAGAGCAAGTGCAGCATCAGGTTGGTGCATTTCTTCTGATCAAAAGGTCGAATTGCAACTGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS TCA 72 bp AAAATTCCTATCAAGTCTTGGTTTCAAACACGCTCGTaGAGCCTTCGTCCTCTCTCAGTACCTGGCACATAC +
Preference number: 6 (lower is better)
Translates to: KIPIKSWFQTRS*SLRPLSVPGTY
Trigger: GTATGTGCCAGGTACTGAGAGAGGACGAAGGCTTCACGAGCGTGTTTGAAACCAAGACTTGATAGGAATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS GCA 72 bp AGACCAGTTGCAATTCGACCTTTTGATCAGAAGAAATaGACCAACCTGATGCTGCACTTGCTCTTCCAGTTG +
Preference number: 6 (lower is better)
Translates to: RPVAIRPFDQKK*TNLMLHLLFQL
Trigger: CAACTGGAAGAGCAAGTGCAGCATCAGGTTGGTGCATTTCTTCTGATCAAAAGGTCGAATTGCAACTGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS CAA 72 bp CCGGGGTCATGCTTACAGTCAGCATTAGAGCCAGGATaGGAATTAAGATGCCCCTTCATTCAACTTCATTCA +
Preference number: 6 (lower is better)
Translates to: PGSCLQSALEPG*ELRCPFIQLHS
Trigger: TGAATGAAGTTGAATGAAGGGGCATCTTAATTCCAATCCTGGCTCTAATGCTGACTGTAAGCATGACCCCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS CAA 90 bp ATAACTCATCCGGGGTCATGCTTACAGTCAGCATTAGAGCCAGGATaGGAATTAAGATGCCCCTTCATTCAACTTCATTCAACTTGCTCT +
Preference number: 6 (lower is better)
Translates to: ITHPGSCLQSALEPG*ELRCPFIQLHSTCS
Trigger: AGAGCAAGTTGAATGAAGTTGAATGAAGGGGCATCTTAATTCCAATCCTGGCTCTAATGCTGACTGTAAGCATGACCCCGGATGAGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS TCA 72 bp CCTCTCTTTTTGACCAGCTGGAGTTATAATATGCTTTaGGTCGCTAAAGGGGCTGATCTCTCATTAATTCCT +
Preference number: 6 (lower is better)
Translates to: PLFLTSWSYNML*VAKGADLSLIP
Trigger: AGGAATTAATGAGAGATCAGCCCCTTTAGCGACTCAAAGCATATTATAACTCCAGCTGGTCAAAAAGAGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS GCA 72 bp TTACAGTCAGCATTAGAGCCAGGATTGGAATTAAGATaGCCCTTCATTCAACTTCATTCAACTTGCTCTCTT +
Preference number: 6 (lower is better)
Translates to: LQSALEPGLELR*PFIQLHSTCSL
Trigger: AAGAGAGCAAGTTGAATGAAGTTGAATGAAGGGGCATCTTAATTCCAATCCTGGCTCTAATGCTGACTGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS CAA 72 bp AGAAACAGAAATATCCAGGTGCGAACTACTTCTGCTTaGATGGATGCTCAATGTGTTATGATGTTAGATGAT +
Preference number: 6 (lower is better)
Translates to: RNRNIQVRTTSA*MDAQCVMMLDD
Trigger: ATCATCTAACATCATAACACATTGAGCATCCATCAAAGCAGAAGTAGTTCGCACCTGGATATTTCTGTTTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS GCA 72 bp AAAAAGAAACAGAAATATCCAGGTGCGAACTACTTCTaGTTTGATGGATGCTCAATGTGTTATGATGTTAGA +
Preference number: 6 (lower is better)
Translates to: KKKQKYPGANYF*FDGCSMCYDVR
Trigger: TCTAACATCATAACACATTGAGCATCCATCAAAGCAGAAGTAGTTCGCACCTGGATATTTCTGTTTCTTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000519929.2
CDS TCA 72 bp TATTTATTGAACACTCAGTATATATGGTGGGTTCTGTaGAAGGTGCTATTCATTTATTGTGATCCCTGCTTT +
Preference number: 6 (lower is better)
Translates to: YLLNTQYIWWVL*KVLFIYCDPCF
Trigger: AAAGCAGGGATCACAATAAATGAATAGCACCTTTCACAGAACCCACCATATATACTGAGTGTTCAATAAATA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519929.2