RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02136 (Homo sapiens)

Ensembl gene IDs: ENSG00000261348, ENSG00000287711

Ensembl transcript IDs: ENST00000567469.2, ENST00000658617.2

Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TCCCACACGCACCGCAGGGCCCCACCGCCTCTTGGTGAGCCGCGGTaGCTCGGGTCCCGGGTCCCCAATAGGCTGCGCTCCCGGCAGGCA +
Preference number: 5 (lower is better)
Translates to: SHTHRRAPPPLGEPR*LGSRVPNRLRSRQA
Trigger: TGCCTGCCGGGAGCGCAGCCTATTGGGGACCCGGGACCCGAGCCACCGCGGCTCACCAAGAGGCGGTGGGGCCCTGCGGTGCGTGTGGGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 90 bp CTCTTGGTGAGCCGCGGTGGCTCGGGTCCCGGGTCCCCAATAGGCTaGGCTCCCGGCAGGCAGCTTTCTTCCCGGCGCGGGGCTCGTTCC +
Preference number: 5 (lower is better)
Translates to: LLVSRGGSGPGSPIG*APGRQLSSRRGARS
Trigger: GGAACGAGCCCCGCGCCGGGAAGAAAGCTGCCTGCCGGGAGCGCAGCCTATTGGGGACCCGGGACCCGAGCCACCGCGGCTCACCAAGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 90 bp GCGCTCCCGGCAGGCAGCTTTCTTCCCGGCGCGGGGCTCGTTCCCTaGGGCCAGGCCGCTCAGTGGCCGCAAGAGCGACCTTCCCACATG +
Preference number: 5 (lower is better)
Translates to: ALPAGSFLPGAGLVP*GQAAQWPQERPSHM
Trigger: CATGTGGGAAGGTCGCTCTTGCGGCCACTGAGCGGCCTGGCCTCAGGGAACGAGCCCCGCGCCGGGAAGAAAGCTGCCTGCCGGGAGCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 90 bp CCCAGGTGTGCGCACAAGCCCGGGGTGAGACCAGAAGCTGCTGCCTaGAGAGCCCGACCTTGCGTAGATGACTCCGCGAGTGCAAGGGGC +
Preference number: 5 (lower is better)
Translates to: PRCAHKPGVRPEAAA*RARPCVDDSASARG
Trigger: GCCCCTTGCACTCGCGGAGTCATCTACGCAAGGTCGGGCTCTGCAGGCAGCAGCTTCTGGTCTCACCCCGGGCTTGTGCGCACACCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 90 bp CCGCTCAGTGGCCGCAAGAGCGACCTTCCCACATGTCCCCAGGTGTaGGCACAAGCCCGGGGTGAGACCAGAAGCTGCTGCCTGCAGAGC +
Preference number: 5 (lower is better)
Translates to: PLSGRKSDLPTCPQV*AQARGETRSCCLQS
Trigger: GCTCTGCAGGCAGCAGCTTCTGGTCTCACCCCGGGCTTGTGCGCACACCTGGGGACATGTGGGAAGGTCGCTCTTGCGGCCACTGAGCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 90 bp GGTTCTGACACCCCATGCCGTGGAATCGCACGGTGGGATCCCAGCTaGCCCAGGGTGCTCCGTCTCCACCCTGGCTTTCCATCTGGCCCA +
Preference number: 5 (lower is better)
Translates to: GSDTPCRGIARWDPS*PRVLRLHPGFPSGP
Trigger: TGGGCCAGATGGAAAGCCAGGGTGGAGACGGAGCACCCTGGGTCAGCTGGGATCCCACCGTGCGATTCCACGGCATGGGGTGTCAGAACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000658617.2
CDS GCA 90 bp CCCCATGCCGTGGAATCGCACGGTGGGATCCCAGCTGACCCAGGGTaGTCCGTCTCCACCCTGGCTTTCCATCTGGCCCACACAGGTGAA +
Preference number: 5 (lower is better)
Translates to: PHAVESHGGIPADPG*SVSTLAFHLAHTGE
Trigger: TTCACCTGTGTGGGCCAGATGGAAAGCCAGGGTGGAGACGGAGCACCCTGGGTCAGCTGGGATCCCACCGTGCGATTCCACGGCATGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000658617.2
CDS GCA 90 bp TTTGAAGGGAACCCTGAATCTCTCCTAGGTACAGGTAGGCCCAGGTaGAGCTCTGACAGGCTCGCCACTCCCGGGCAGGAAACCTCCCAG +
Preference number: 5 (lower is better)
Translates to: FEGNPESLLGTGRPR*SSDRLATPGQETSQ
Trigger: CTGGGAGGTTTCCTGCCCGGGAGTGGCGAGCCTGTCAGAGCTGCACCTGGGCCTACCTGTACCTAGGAGAGATTCAGGGTTCCCTTCAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 90 bp TCTTCATCTCCAACCAGGATCACCAGTCTGCCAGGCCCCTTCCTGTaGTCCTCAGGAGGCCAGCAGTCTGCCAATATCTGGAACTGGCAT +
Preference number: 5 (lower is better)
Translates to: SSSPTRITSLPGPFL*SSGGQQSANIWNWH
Trigger: ATGCCAGTTCCAGATATTGGCAGACTGCTGGCCTCCTGAGGAGCACAGGAAGGGGCCTGGCAGACTGGTGATCCTGGTTGGAGATGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 90 bp TACAAGGCTCAGGGAGAACAAGGTCTCCCTGAGGTCTCTTTTCACTaGGGGGTGAAGCCTCCTCTAGGCATGGCTTCCCAAGTGTCCGTG +
Preference number: 5 (lower is better)
Translates to: YKAQGEQGLPEVSFH*GVKPPLGMASQVSV
Trigger: CACGGACACTTGGGAAGCCATGCCTAGAGGAGGCTTCACCCCTCAGTGAAAAGAGACCTCAGGGAGACCTTGTTCTCCCTGAGCCTTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS GCA 90 bp CACGTCTTTATCGATGTCTTTATCGATGCCCATCCGCATGAGCCTTaGTTGGTGACCAGTCACCCCACCCGCTTCAGCACTTTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: HVFIDVFIDAHPHEP*LVTSHPTRFSTFLL
Trigger: CAGCAGGAAAGTGCTGAAGCGGGTGGGGTGACTGGTCACCAAGCAAGGCTCATGCGGATGGGCATCGATAAAGACATCGATAAAGACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS TCA 90 bp AGGGTGCTCCGTCTCCACCCTGGCTTTCCATCTGGCCCACACAGGTaGAGTGCAAAGGCTGATCTCAGAGAAACCATCAGAAAAAGGCTA +
Preference number: 5 (lower is better)
Translates to: RVLRLHPGFPSGPHR*SAKADLRETIRKRL
Trigger: TAGCCTTTTTCTGATGGTTTCTCTGAGATCAGCCTTTGCACTTCACCTGTGTGGGCCAGATGGAAAGCCAGGGTGGAGACGGAGCACCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000658617.2
CDS TCA 90 bp CTCAGGAGGCCAGCAGTCTGCCAATATCTGGAACTGGCATCTAGGTaGGGCTCAATGTCATGGCAACTCCATTCTACCTGCTTTTCCCAG +
Preference number: 5 (lower is better)
Translates to: LRRPAVCQYLELASR*GSMSWQLHSTCFSQ
Trigger: CTGGGAAAAGCAGGTAGAATGGAGTTGCCATGACATTGAGCCTCACCTAGATGCCAGTTCCAGATATTGGCAGACTGCTGGCCTCCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS CCA 90 bp GCTTTTCCCAGGGCTTCTGTGACTTTGCACCATCGTAGTAGTCTCTaGAGCCCCTTGAGATTTCCCTTCAATCTCTTCTTGCCTCCTGGC +
Preference number: 5 (lower is better)
Translates to: AFPRASVTLHHRSSL*SPLRFPFNLFLPPG
Trigger: GCCAGGAGGCAAGAAGAGATTGAAGGGAAATCTCAAGGGGCTCCAGAGACTACTACGATGGTGCAAAGTCACAGAAGCCCTGGGAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS CCA 90 bp TTCCTGTGCTCCTCAGGAGGCCAGCAGTCTGCCAATATCTGGAACTaGCATCTAGGTGAGGCTCAATGTCATGGCAACTCCATTCTACCT +
Preference number: 5 (lower is better)
Translates to: FLCSSGGQQSANIWN*HLGEAQCHGNSILP
Trigger: AGGTAGAATGGAGTTGCCATGACATTGAGCCTCACCTAGATGCCAGTTCCAGATATTGGCAGACTGCTGGCCTCCTGAGGAGCACAGGAA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 90 bp TCACCCCACCCGCTTCAGCACTTTCCTGCTGGGCGAGGCACTGGATaGTTGTCTGAGTTTCTTGAGGTTGTTAAACCTCCTTCAAACCTT +
Preference number: 5 (lower is better)
Translates to: SPHPLQHFPAGRGTG*LSEFLEVVKPPSNL
Trigger: AAGGTTTGAAGGAGGTTTAACAACCTCAAGAAACTCAGACAATCATCCAGTGCCTCGCCCAGCAGGAAAGTGCTGAAGCGGGTGGGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS GCA 72 bp AGCCGCGGTGGCTCGGGTCCCGGGTCCCCAATAGGCTaGGCTCCCGGCAGGCAGCTTTCTTCCCGGCGCGGG +
Preference number: 6 (lower is better)
Translates to: SRGGSGPGSPIG*APGRQLSSRRG
Trigger: CCCGCGCCGGGAAGAAAGCTGCCTGCCGGGAGCGCAGCCTATTGGGGACCCGGGACCCGAGCCACCGCGGCT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS CCA 72 bp CACCGCAGGGCCCCACCGCCTCTTGGTGAGCCGCGGTaGCTCGGGTCCCGGGTCCCCAATAGGCTGCGCTCC +
Preference number: 6 (lower is better)
Translates to: HRRAPPPLGEPR*LGSRVPNRLRS
Trigger: GGAGCGCAGCCTATTGGGGACCCGGGACCCGAGCCACCGCGGCTCACCAAGAGGCGGTGGGGCCCTGCGGTG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 72 bp GCAGGCAGCTTTCTTCCCGGCGCGGGGCTCGTTCCCTaGGGCCAGGCCGCTCAGTGGCCGCAAGAGCGACCT +
Preference number: 6 (lower is better)
Translates to: AGSFLPGAGLVP*GQAAQWPQERP
Trigger: AGGTCGCTCTTGCGGCCACTGAGCGGCCTGGCCTCAGGGAACGAGCCCCGCGCCGGGAAGAAAGCTGCCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 72 bp TCTCTTCTTGCCTCCTGGCCGTGCTCAGAGTCTGCCTaGCCGGCGTCCCACACGCACCGCAGGGCCCCACCG +
Preference number: 6 (lower is better)
Translates to: SLLASWPCSESA*PASHTHRRAPP
Trigger: CGGTGGGGCCCTGCGGTGCGTGTGGGACGCCGGGCAGGCAGACTCTGAGCACGGCCAGGAGGCAAGAAGAGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 72 bp TCAATCTCTTCTTGCCTCCTGGCCGTGCTCAGAGTCTaGCTGCCCGGCGTCCCACACGCACCGCAGGGCCCC +
Preference number: 6 (lower is better)
Translates to: SISSCLLAVLRV*LPGVPHAPQGP
Trigger: GGGGCCCTGCGGTGCGTGTGGGACGCCGGGCAGGCAGACTCTGAGCACGGCCAGGAGGCAAGAAGAGATTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 72 bp GGCCGCAAGAGCGACCTTCCCACATGTCCCCAGGTGTaGGCACAAGCCCGGGGTGAGACCAGAAGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: GRKSDLPTCPQV*AQARGETRSCC
Trigger: GCAGCAGCTTCTGGTCTCACCCCGGGCTTGTGCGCACACCTGGGGACATGTGGGAAGGTCGCTCTTGCGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 72 bp ACCCCATGCCGTGGAATCGCACGGTGGGATCCCAGCTaGCCCAGGGTGCTCCGTCTCCACCCTGGCTTTCCA +
Preference number: 6 (lower is better)
Translates to: TPCRGIARWDPS*PRVLRLHPGFP
Trigger: TGGAAAGCCAGGGTGGAGACGGAGCACCCTGGGTCAGCTGGGATCCCACCGTGCGATTCCACGGCATGGGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000658617.2
CDS GCA 72 bp GCGCACAAGCCCGGGGTGAGACCAGAAGCTGCTGCCTaGAGAGCCCGACCTTGCGTAGATGACTCCGCGAGT +
Preference number: 6 (lower is better)
Translates to: AHKPGVRPEAAA*RARPCVDDSAS
Trigger: ACTCGCGGAGTCATCTACGCAAGGTCGGGCTCTGCAGGCAGCAGCTTCTGGTCTCACCCCGGGCTTGTGCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 72 bp GTGGAATCGCACGGTGGGATCCCAGCTGACCCAGGGTaGTCCGTCTCCACCCTGGCTTTCCATCTGGCCCAC +
Preference number: 6 (lower is better)
Translates to: VESHGGIPADPG*SVSTLAFHLAH
Trigger: GTGGGCCAGATGGAAAGCCAGGGTGGAGACGGAGCACCCTGGGTCAGCTGGGATCCCACCGTGCGATTCCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000658617.2
CDS GCA 72 bp GTGAGACCAGAAGCTGCTGCCTGCAGAGCCCGACCTTaGGTAGATGACTCCGCGAGTGCAAGGGGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: VRPEAAACRARP*VDDSASARGCR
Trigger: CCTGCAGCCCCTTGCACTCGCGGAGTCATCTACGCAAGGTCGGGCTCTGCAGGCAGCAGCTTCTGGTCTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS GCA 72 bp AACCCTGAATCTCTCCTAGGTACAGGTAGGCCCAGGTaGAGCTCTGACAGGCTCGCCACTCCCGGGCAGGAA +
Preference number: 6 (lower is better)
Translates to: NPESLLGTGRPR*SSDRLATPGQE
Trigger: TTCCTGCCCGGGAGTGGCGAGCCTGTCAGAGCTGCACCTGGGCCTACCTGTACCTAGGAGAGATTCAGGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 72 bp AGAAGCTGCTGCCTGCAGAGCCCGACCTTGCGTAGATaGCTCCGCGAGTGCAAGGGGCTGCAGGCATTTTCT +
Preference number: 6 (lower is better)
Translates to: RSCCLQSPTLRR*LRECKGLQAFS
Trigger: AGAAAATGCCTGCAGCCCCTTGCACTCGCGGAGTCATCTACGCAAGGTCGGGCTCTGCAGGCAGCAGCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 72 bp TCTTTATCGATGCCCATCCGCATGAGCCTTGCTTGGTaGCCAGTCACCCCACCCGCTTCAGCACTTTCCTGC +
Preference number: 6 (lower is better)
Translates to: SLSMPIRMSLAW*PVTPPASALSC
Trigger: GCAGGAAAGTGCTGAAGCGGGTGGGGTGACTGGTCACCAAGCAAGGCTCATGCGGATGGGCATCGATAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS CAA 90 bp GTCTTTATCGATGTCTTTATCGATGCCCATCCGCATGAGCCTTGCTaGGTGACCAGTCACCCCACCCGCTTCAGCACTTTCCTGCTGGGC +
Preference number: 6 (lower is better)
Translates to: VFIDVFIDAHPHEPC*VTSHPTRFSTFLLG
Trigger: GCCCAGCAGGAAAGTGCTGAAGCGGGTGGGGTGACTGGTCACCAAGCAAGGCTCATGCGGATGGGCATCGATAAAGACATCGATAAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS GCA 72 bp ATCGATGTCTTTATCGATGCCCATCCGCATGAGCCTTaGTTGGTGACCAGTCACCCCACCCGCTTCAGCACT +
Preference number: 6 (lower is better)
Translates to: IDVFIDAHPHEP*LVTSHPTRFST
Trigger: AGTGCTGAAGCGGGTGGGGTGACTGGTCACCAAGCAAGGCTCATGCGGATGGGCATCGATAAAGACATCGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS CAA 72 bp GATGTCTTTATCGATGCCCATCCGCATGAGCCTTGCTaGGTGACCAGTCACCCCACCCGCTTCAGCACTTTC +
Preference number: 6 (lower is better)
Translates to: DVFIDAHPHEPC*VTSHPTRFSTF
Trigger: GAAAGTGCTGAAGCGGGTGGGGTGACTGGTCACCAAGCAAGGCTCATGCGGATGGGCATCGATAAAGACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS TCA 72 bp CGTCTTTATCGATGTCTTTATCGATGCCCATCCGCATaGGCCTTGCTTGGTGACCAGTCACCCCACCCGCTT +
Preference number: 6 (lower is better)
Translates to: RLYRCLYRCPSA*ALLGDQSPHPL
Trigger: AAGCGGGTGGGGTGACTGGTCACCAAGCAAGGCTCATGCGGATGGGCATCGATAAAGACATCGATAAAGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS TCA 72 bp CGTCTCCACCCTGGCTTTCCATCTGGCCCACACAGGTaGAGTGCAAAGGCTGATCTCAGAGAAACCATCAGA +
Preference number: 6 (lower is better)
Translates to: RLHPGFPSGPHR*SAKADLRETIR
Trigger: TCTGATGGTTTCTCTGAGATCAGCCTTTGCACTTCACCTGTGTGGGCCAGATGGAAAGCCAGGGTGGAGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000658617.2
CDS CAA 90 bp AGGGCTTCTGTGACTTTGCACCATCGTAGTAGTCTCTGGAGCCCCTaGAGATTTCCCTTCAATCTCTTCTTGCCTCCTGGCCGTGCTCAG +
Preference number: 6 (lower is better)
Translates to: RASVTLHHRSSLWSP*RFPFNLFLPPGRAQ
Trigger: CTGAGCACGGCCAGGAGGCAAGAAGAGATTGAAGGGAAATCTCAAGGGGCTCCAGAGACTACTACGATGGTGCAAAGTCACAGAAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 72 bp GCAACTCCATTCTACCTGCTTTTCCCAGGGCTTCTGTaGCTTTGCACCATCGTAGTAGTCTCTGGAGCCCCT +
Preference number: 6 (lower is better)
Translates to: ATPFYLLFPGLL*LCTIVVVSGAP
Trigger: AGGGGCTCCAGAGACTACTACGATGGTGCAAAGTCACAGAAGCCCTGGGAAAAGCAGGTAGAATGGAGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 72 bp CTGAATGTACAAGGCTCAGGGAGAACAAGGTCTCCCTaGGGTCTCTTTTCACTGAGGGGTGAAGCCTCCTCT +
Preference number: 6 (lower is better)
Translates to: LNVQGSGRTRSP*GLFSLRGEASS
Trigger: AGAGGAGGCTTCACCCCTCAGTGAAAAGAGACCTCAGGGAGACCTTGTTCTCCCTGAGCCTTGTACATTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS CAA 90 bp CATGGCAACTCCATTCTACCTGCTTTTCCCAGGGCTTCTGTGACTTaGCACCATCGTAGTAGTCTCTGGAGCCCCTTGAGATTTCCCTTC +
Preference number: 6 (lower is better)
Translates to: HGNSILPAFPRASVT*HHRSSLWSPLRFPF
Trigger: GAAGGGAAATCTCAAGGGGCTCCAGAGACTACTACGATGGTGCAAAGTCACAGAAGCCCTGGGAAAAGCAGGTAGAATGGAGTTGCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS TCA 72 bp CCGCTTCAGCACTTTCCTGCTGGGCGAGGCACTGGATaGTTGTCTGAGTTTCTTGAGGTTGTTAAACCTCCT +
Preference number: 6 (lower is better)
Translates to: PLQHFPAGRGTG*LSEFLEVVKPP
Trigger: AGGAGGTTTAACAACCTCAAGAAACTCAGACAATCATCCAGTGCCTCGCCCAGCAGGAAAGTGCTGAAGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000567469.2
ENST00000658617.2
CDS CAA 72 bp TCCATTCTACCTGCTTTTCCCAGGGCTTCTGTGACTTaGCACCATCGTAGTAGTCTCTGGAGCCCCTTGAGA +
Preference number: 6 (lower is better)
Translates to: SILPAFPRASVT*HHRSSLWSPLR
Trigger: TCTCAAGGGGCTCCAGAGACTACTACGATGGTGCAAAGTCACAGAAGCCCTGGGAAAAGCAGGTAGAATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567469.2
CDS CCA 72 bp AGGGCTTCTGTGACTTTGCACCATCGTAGTAGTCTCTaGAGCCCCTTGAGATTTCCCTTCAATCTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: RASVTLHHRSSL*SPLRFPFNLFL
Trigger: CAAGAAGAGATTGAAGGGAAATCTCAAGGGGCTCCAGAGACTACTACGATGGTGCAAAGTCACAGAAGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567469.2