Pregenerated sensors for LINC02134 (Homo sapiens)
Ensembl gene IDs: ENSG00000260450Ensembl transcript IDs: ENST00000562980.1, ENST00000657877.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CACAAAGTAAAAATGCCCCTCCTTCATGGCATCCCTAATGCTTCTTaGGAGCCCACGAATGCATTTATGGCCAGTATCTCTGTAATCCAG | + |
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Preference number: 5 (lower is better) Translates to: HKVKMPLLHGIPNAS*EPTNAFMASISVIQ Trigger: CTGGATTACAGAGATACTGGCCATAAATGCATTCGTGGGCTCTCAAGAAGCATTAGGGATGCCATGAAGGAGGGGCATTTTTACTTTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000562980.1 ENST00000657877.1 |
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| CDS CCA 72 bp | GAGACTCCAGCACAATGCATCCCCTCGAGACCCCTTTaGAGGAGTCACTGTCTCCGTCGTAACTCTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: ETPAQCIPSRPL*RSHCLRRNSAQ Trigger: CTGTGCAGAGTTACGACGGAGACAGTGACTCCTCCAAAGGGGTCTCGAGGGGATGCATTGTGCTGGAGTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000562980.1 ENST00000657877.1 |
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| CDS CCA 72 bp | TCCGTCGTAACTCTGCACAGTCCCTCCAGCAGCTGTTaGATGACTTCCATGCCCATCTCATTGAGATGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SVVTLHSPSSSC*MTSMPISLRCH Trigger: GTGGCATCTCAATGAGATGGGCATGGAAGTCATCCAACAGCTGCTGGAGGGACTGTGCAGAGTTACGACGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000562980.1 |
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| CDS TCA 72 bp | GGCAGCACTGTTTTTCACGTTCAGCTTCCAGGCACTTaGTTGAGACTCCAGCACAATGCATCCCCTCGAGAC | + |
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Preference number: 6 (lower is better) Translates to: GSTVFHVQLPGT*LRLQHNASPRD Trigger: GTCTCGAGGGGATGCATTGTGCTGGAGTCTCAATCAAGTGCCTGGAAGCTGAACGTGAAAAACAGTGCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000562980.1 ENST00000657877.1 |
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| CDS GCA 72 bp | AGCTGTTGGATGACTTCCATGCCCATCTCATTGAGATaGCACTTAGACAAGGCCTTCAAATGTGGAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SCWMTSMPISLR*HLDKAFKCGAA Trigger: TGCAGCTCCACATTTGAAGGCCTTGTCTAAGTGGCATCTCAATGAGATGGGCATGGAAGTCATCCAACAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000562980.1 |
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| CDS CCA 72 bp | TCAAATGTGGAGCTGCAGAAGGGGCTGGGTGTAGTCTaGGGTAAAGGACTGCCCATTAACATTCAATCCATA | + |
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Preference number: 6 (lower is better) Translates to: SNVELQKGLGVV*GKGLPINIQSI Trigger: TATGGATTGAATGTTAATGGGCAGTCCTTTACCCCAGACTACACCCAGCCCCTTCTGCAGCTCCACATTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000562980.1 ENST00000657877.1 |
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| CDS TCA 72 bp | AAAATGCCCCTCCTTCATGGCATCCCTAATGCTTCTTaGGAGCCCACGAATGCATTTATGGCCAGTATCTCT | + |
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Preference number: 6 (lower is better) Translates to: KMPLLHGIPNAS*EPTNAFMASIS Trigger: AGAGATACTGGCCATAAATGCATTCGTGGGCTCTCAAGAAGCATTAGGGATGCCATGAAGGAGGGGCATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000562980.1 ENST00000657877.1 |
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| CDS CAA 90 bp | ACTACAGCTCCTCTCCATCTGATTCAAGTATCTATTACCATCTCATaGAGATGCCACTTAGACAAGGCCTTCAAATGTGGAGCTGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: TTAPLHLIQVSITIS*RCHLDKAFKCGAAE Trigger: TTCTGCAGCTCCACATTTGAAGGCCTTGTCTAAGTGGCATCTCAATGAGATGGTAATAGATACTTGAATCAGATGGAGAGGAGCTGTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657877.1 |
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| CDS GCA 72 bp | CATCTGATTCAAGTATCTATTACCATCTCATTGAGATaGCACTTAGACAAGGCCTTCAAATGTGGAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: HLIQVSITISLR*HLDKAFKCGAA Trigger: TGCAGCTCCACATTTGAAGGCCTTGTCTAAGTGGCATCTCAATGAGATGGTAATAGATACTTGAATCAGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657877.1 |
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| CDS CAA 72 bp | CCTCTCCATCTGATTCAAGTATCTATTACCATCTCATaGAGATGCCACTTAGACAAGGCCTTCAAATGTGGA | + |
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Preference number: 6 (lower is better) Translates to: PLHLIQVSITIS*RCHLDKAFKCG Trigger: TCCACATTTGAAGGCCTTGTCTAAGTGGCATCTCAATGAGATGGTAATAGATACTTGAATCAGATGGAGAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657877.1 |
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