Pregenerated sensors for LINC02122 (Homo sapiens)
Ensembl gene IDs: ENSG00000248474Ensembl transcript IDs: ENST00000511395.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCTTCATCATCAAAAGTGAAAATGACATTGATGAGATGCAATTCATaGTGGAGAATAGGGTCTGGAGGCAGGGCCAGTTTGCACCGACTT | + |
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Preference number: 5 (lower is better) Translates to: PSSSKVKMTLMRCNS*WRIGSGGRASLHRL Trigger: AAGTCGGTGCAAACTGGCCCTGCCTCCAGACCCTATTCTCCAGCATGAATTGCATCTCATCAATGTCATTTTCACTTTTGATGATGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS CCA 90 bp | TCATCATCAAAAGTGAAAATGACATTGATGAGATGCAATTCATGCTaGAGAATAGGGTCTGGAGGCAGGGCCAGTTTGCACCGACTTCCT | + |
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Preference number: 5 (lower is better) Translates to: SSSKVKMTLMRCNSC*RIGSGGRASLHRLP Trigger: AGGAAGTCGGTGCAAACTGGCCCTGCCTCCAGACCCTATTCTCCAGCATGAATTGCATCTCATCAATGTCATTTTCACTTTTGATGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS GCA 90 bp | GGTAATCAGCCTTCATCATCAAAAGTGAAAATGACATTGATGAGATaGAATTCATGCTGGAGAATAGGGTCTGGAGGCAGGGCCAGTTTG | + |
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Preference number: 5 (lower is better) Translates to: GNQPSSSKVKMTLMR*NSCWRIGSGGRASL Trigger: CAAACTGGCCCTGCCTCCAGACCCTATTCTCCAGCATGAATTGCATCTCATCAATGTCATTTTCACTTTTGATGATGAAGGCTGATTACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS TCA 90 bp | TCCTGTGTTTCTTCCAACTTCTCTCAGCCTGTTTTCTCACCTTGCTaGGAAGAATCTTCCTTCTTTTTATTAGGTAGCAAGTGTAAGACT | + |
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Preference number: 5 (lower is better) Translates to: SCVSSNFSQPVFSPC*EESSFFLLGSKCKT Trigger: AGTCTTACACTTGCTACCTAATAAAAAGAAGGAAGATTCTTCTCAGCAAGGTGAGAAAACAGGCTGAGAGAAGTTGGAAGAAACACAGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS CAA 72 bp | TCATGCTGGAGAATAGGGTCTGGAGGCAGGGCCAGTTaGCACCGACTTCCTAGAAATGAATCAAAAGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: SCWRIGSGGRAS*HRLPRNESKGK Trigger: TTTTCCTTTTGATTCATTTCTAGGAAGTCGGTGCAAACTGGCCCTGCCTCCAGACCCTATTCTCCAGCATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS CCA 72 bp | AAAGTGAAAATGACATTGATGAGATGCAATTCATGCTaGAGAATAGGGTCTGGAGGCAGGGCCAGTTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: KVKMTLMRCNSC*RIGSGGRASLH Trigger: GTGCAAACTGGCCCTGCCTCCAGACCCTATTCTCCAGCATGAATTGCATCTCATCAATGTCATTTTCACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS GCA 72 bp | TCAAAAGTGAAAATGACATTGATGAGATGCAATTCATaGTGGAGAATAGGGTCTGGAGGCAGGGCCAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: SKVKMTLMRCNS*WRIGSGGRASL Trigger: CAAACTGGCCCTGCCTCCAGACCCTATTCTCCAGCATGAATTGCATCTCATCAATGTCATTTTCACTTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS GCA 72 bp | CCTTCATCATCAAAAGTGAAAATGACATTGATGAGATaGAATTCATGCTGGAGAATAGGGTCTGGAGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: PSSSKVKMTLMR*NSCWRIGSGGR Trigger: CCTGCCTCCAGACCCTATTCTCCAGCATGAATTGCATCTCATCAATGTCATTTTCACTTTTGATGATGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS TCA 72 bp | TCTTCCAACTTCTCTCAGCCTGTTTTCTCACCTTGCTaGGAAGAATCTTCCTTCTTTTTATTAGGTAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: SSNFSQPVFSPC*EESSFFLLGSK Trigger: CTTGCTACCTAATAAAAAGAAGGAAGATTCTTCTCAGCAAGGTGAGAAAACAGGCTGAGAGAAGTTGGAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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| CDS CAA 72 bp | GGTAATCAGCCTTCATCATCAAAAGTGAAAATGACATaGATGAGATGCAATTCATGCTGGAGAATAGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: GNQPSSSKVKMT*MRCNSCWRIGS Trigger: AGACCCTATTCTCCAGCATGAATTGCATCTCATCAATGTCATTTTCACTTTTGATGATGAAGGCTGATTACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511395.1 |
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