Pregenerated sensors for LINC02115 (Homo sapiens)

Ensembl gene IDs: ENSG00000248757

Ensembl transcript IDs: ENST00000503367.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TTTGCCTCTCTTCTAGCCTGTAGGAAGGTCTCTCTTGTCAGGTACTaGAACAGTTTCCAGTGGGCCTGGTCACAATCTGAGCTATACTGT	+
Preference number: 5 (lower is better) Translates to: FASLLACRKVSLVRY*NSFQWAWSQSELYC Trigger: ACAGTATAGCTCAGATTGTGACCAGGCCCACTGGAAACTGTTTCAGTACCTGACAAGAGAGACCTTCCTACAGGCTAGAAGAGAGGCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503367.2
CDS CCA 90 bp	CCTCCGAAACATGAAATCCCTGTAACTCTTTCAATGAAGTTGTGTTaGTGTTCCCCAGGGGCAGAGCTCATCAATTCTGCTGACACCAGA	+
Preference number: 5 (lower is better) Translates to: PPKHEIPVTLSMKLC*CSPGAELINSADTR Trigger: TCTGGTGTCAGCAGAATTGATGAGCTCTGCCCCTGGGGAACACCAACACAACTTCATTGAAAGAGTTACAGGGATTTCATGTTTCGGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503367.2
CDS CCA 90 bp	TTTCACTGCCCTTGCACCACTCCAAACCATTGTGCATTCCAGCAGTaGTGTGCGTCCCTTGCTTTAGAAGATTTTAAAGATGCAGTCATA	+
Preference number: 5 (lower is better) Translates to: FHCPCTTPNHCAFQQ*CASLALEDFKDAVI Trigger: TATGACTGCATCTTTAAAATCTTCTAAAGCAAGGGACGCACACCACTGCTGGAATGCACAATGGTTTGGAGTGGTGCAAGGGCAGTGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503367.2
CDS GCA 72 bp	TTTGGGGAGTTGTGGGTCTTCAGTTTTCACTGCCCTTaGACCACTCCAAACCATTGTGCATTCCAGCAGTGG	+
Preference number: 6 (lower is better) Translates to: FGELWVFSFHCP*TTPNHCAFQQW Trigger: CCACTGCTGGAATGCACAATGGTTTGGAGTGGTGCAAGGGCAGTGAAAACTGAAGACCCACAACTCCCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503367.2
CDS CAA 72 bp	CTTCAGTTTTCACTGCCCTTGCACCACTCCAAACCATaGTGCATTCCAGCAGTGGTGTGCGTCCCTTGCTTT	+
Preference number: 6 (lower is better) Translates to: LQFSLPLHHSKP*CIPAVVCVPCF Trigger: AAAGCAAGGGACGCACACCACTGCTGGAATGCACAATGGTTTGGAGTGGTGCAAGGGCAGTGAAAACTGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503367.2
CDS CAA 90 bp	GTTGTGGGTCTTCAGTTTTCACTGCCCTTGCACCACTCCAAACCATaGTGCATTCCAGCAGTGGTGTGCGTCCCTTGCTTTAGAAGATTT	+
Preference number: 6 (lower is better) Translates to: VVGLQFSLPLHHSKP*CIPAVVCVPCFRRF Trigger: AAATCTTCTAAAGCAAGGGACGCACACCACTGCTGGAATGCACAATGGTTTGGAGTGGTGCAAGGGCAGTGAAAACTGAAGACCCACAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503367.2
CDS CCA 72 bp	CATGAAATCCCTGTAACTCTTTCAATGAAGTTGTGTTaGTGTTCCCCAGGGGCAGAGCTCATCAATTCTGCT	+
Preference number: 6 (lower is better) Translates to: HEIPVTLSMKLC*CSPGAELINSA Trigger: AGCAGAATTGATGAGCTCTGCCCCTGGGGAACACCAACACAACTTCATTGAAAGAGTTACAGGGATTTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503367.2
CDS CCA 72 bp	CCTTGCACCACTCCAAACCATTGTGCATTCCAGCAGTaGTGTGCGTCCCTTGCTTTAGAAGATTTTAAAGAT	+
Preference number: 6 (lower is better) Translates to: PCTTPNHCAFQQ*CASLALEDFKD Trigger: ATCTTTAAAATCTTCTAAAGCAAGGGACGCACACCACTGCTGGAATGCACAATGGTTTGGAGTGGTGCAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503367.2
CDS CAA 90 bp	ATAATTCCTCCGAAACATGAAATCCCTGTAACTCTTTCAATGAAGTaGTGTTGGTGTTCCCCAGGGGCAGAGCTCATCAATTCTGCTGAC	+
Preference number: 6 (lower is better) Translates to: IIPPKHEIPVTLSMK*CWCSPGAELINSAD Trigger: GTCAGCAGAATTGATGAGCTCTGCCCCTGGGGAACACCAACACAACTTCATTGAAAGAGTTACAGGGATTTCATGTTTCGGAGGAATTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503367.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu