Pregenerated sensors for LINC02108 (Homo sapiens)
Ensembl gene IDs: ENSG00000250127Ensembl transcript IDs: ENST00000504333.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CACCCAGTTAGAGCTTCCTGGCTGCTTTGTTTACCTAAGCAAGCCTaGGCAATGGCGGGCGCCCCTCCCACAGCCTTGCTGCCACCTTGC | + |
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Preference number: 5 (lower is better) Translates to: HPVRASWLLCLPKQA*AMAGAPPTALLPPC Trigger: GCAAGGTGGCAGCAAGGCTGTGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCTAACTGGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CCA 90 bp | CAGGTCTCCTTGAGCTGTGGTGGGCTCCACCCAGTTAGAGCTTCCTaGCTGCTTTGTTTACCTAAGCAAGCCTGGGCAATGGCGGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: QVSLSCGGLHPVRAS*LLCLPKQAWAMAGA Trigger: GGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCTAACTGGGTGGAGCCCACCACAGCTCAAGGAGACCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 90 bp | CCTAGTTCTTGTCAGCTTTCCTCACTTGAGCACCTCTCAGCAGAATaGACCTCCAGTCCCACCTTCTATTCTCTGACCCAGCTGACTCCT | + |
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Preference number: 5 (lower is better) Translates to: PSSCQLSSLEHLSAE*TSSPTFYSLTQLTP Trigger: AGGAGTCAGCTGGGTCAGAGAATAGAAGGTGGGACTGGAGGTGCATTCTGCTGAGAGGTGCTCAAGTGAGGAAAGCTGACAAGAACTAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CAA 90 bp | CCTGACCCCTTGCACTTCCCGAGTGAGGCAATGCCTTGCCCTGCTTaGGCTCACGCATGGTGTGCTGCACCCACTGTCCTGTGCCCACTG | + |
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Preference number: 6 (lower is better) Translates to: PDPLHFPSEAMPCPA*AHAWCAAPTVLCPL Trigger: CAGTGGGCACAGGACAGTGGGTGCAGCACACCATGCGTGAGCCAAAGCAGGGCAAGGCATTGCCTCACTCGGGAAGTGCAAGGGGTCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | GGGTCACAGGTCAGGGACCCACTTGAGGAGGCAGTCTaGCTGTTCTCAGATCTCCAGCTGCGTGCTGCGAGA | + |
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Preference number: 6 (lower is better) Translates to: GSQVRDPLEEAV*LFSDLQLRAAR Trigger: TCTCGCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCTGTGACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CCA 72 bp | AGAGCTTCCTGGCTGCTTTGTTTACCTAAGCAAGCCTaGGCAATGGCGGGCGCCCCTCCCACAGCCTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: RASWLLCLPKQA*AMAGAPPTALL Trigger: CAGCAAGGCTGTGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | GCTGTGGTGGGCTCCACCCAGTTAGAGCTTCCTGGCTaGTTTGTTTACCTAAGCAAGCCTGGGCAATGGCGG | + |
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Preference number: 6 (lower is better) Translates to: AVVGSTQLELPG*FVYLSKPGQWR Trigger: CCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCTAACTGGGTGGAGCCCACCACAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | GGAGGCAGTCTGCCTGTTCTCAGATCTCCAGCTGCGTaGTGCGAGAACCACTGCTCTCTTCAAAGCTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: GGSLPVLRSPAA*CENHCSLQSCQ Trigger: CTGACAGCTTTGAAGAGAGCAGTGGTTCTCGCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | ACAGCCTTGCTGCCACCTTGCAGTTTGATCTCAGAGTaGTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTA | + |
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Preference number: 6 (lower is better) Translates to: TALLPPCSLISE*CASNQRDSVGV Trigger: TACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCACTCTGAGATCAAACTGCAAGGTGGCAGCAAGGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | GGCAGTCTGCCTGTTCTCAGATCTCCAGCTGCGTGCTaGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACA | + |
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Preference number: 6 (lower is better) Translates to: GSLPVLRSPAAC*ENHCSLQSCQT Trigger: TGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCGCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | TTGAGGAGGCAGTCTGCCTGTTCTCAGATCTCCAGCTaGGTGCTGCGAGAACCACTGCTCTCTTCAAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LRRQSACSQISS*VLREPLLSSKL Trigger: CAGCTTTGAAGAGAGCAGTGGTTCTCGCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | CTTTCTTTGACTAGGAAAGGGAACTCCCTGACCCCTTaGACTTCCCGAGTGAGGCAATGCCTTGCCCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LSLTRKGNSLTP*TSRVRQCLALL Trigger: AAGCAGGGCAAGGCATTGCCTCACTCGGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCTAGTCAAAGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CCA 72 bp | TTGAGCTGTGGTGGGCTCCACCCAGTTAGAGCTTCCTaGCTGCTTTGTTTACCTAAGCAAGCCTGGGCAATG | + |
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Preference number: 6 (lower is better) Translates to: LSCGGLHPVRAS*LLCLPKQAWAM Trigger: CATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCTAACTGGGTGGAGCCCACCACAGCTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CAA 72 bp | GTCCAGGCTCACCTAGTTCTTGTCAGCTTTCCTCACTaGAGCACCTCTCAGCAGAATGCACCTCCAGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: VQAHLVLVSFPH*STSQQNAPPVP Trigger: TGGGACTGGAGGTGCATTCTGCTGAGAGGTGCTCAAGTGAGGAAAGCTGACAAGAACTAGGTGAGCCTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CAA 72 bp | GGAGCTGTAGACCGGAGCTGTTCTTATTCGGCCACCTaGGCTCCACCCTACAGGATTCTTTTTAGTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: GAVDRSCSYSAT*APPYRILFSPG Trigger: GCCTGGACTAAAAAGAATCCTGTAGGGTGGAGCCAAGGTGGCCGAATAAGAACAGCTCCGGTCTACAGCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | GAGATTGAGCCATTGCACTCCAGCCTCAGATGGAAATaGAGAAATCATCCGTCTTCTGCGTGGCTCACGCTG | + |
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Preference number: 6 (lower is better) Translates to: EIEPLHSSLRWK*RNHPSSAWLTL Trigger: CAGCGTGAGCCACGCAGAAGACGGATGATTTCTGCATTTCCATCTGAGGCTGGAGTGCAATGGCTCAATCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | TGTCAGCTTTCCTCACTTGAGCACCTCTCAGCAGAATaGACCTCCAGTCCCACCTTCTATTCTCTGACCCAG | + |
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Preference number: 6 (lower is better) Translates to: CQLSSLEHLSAE*TSSPTFYSLTQ Trigger: CTGGGTCAGAGAATAGAAGGTGGGACTGGAGGTGCATTCTGCTGAGAGGTGCTCAAGTGAGGAAAGCTGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CAA 90 bp | AGACAGGGACATTTAAGTCTGCAGAGGTTACTGCTGTCTTTTTGTTaGTCTGTGCCCTGCCCCCAGAGGTGGAGCCTACAGAGACAGGCA | + |
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Preference number: 6 (lower is better) Translates to: RQGHLSLQRLLLSFC*SVPCPQRWSLQRQA Trigger: TGCCTGTCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAATGTCCCTGTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS TCA 72 bp | TGTCCTGTGCCCACTGTCTGGCACTCCCTAGTGAGATaGACCCAGTACCTCAGATGGAAATGCAGAAATCTC | + |
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Preference number: 6 (lower is better) Translates to: CPVPTVWHSLVR*TQYLRWKCRNL Trigger: GAGATTTCTGCATTTCCATCTGAGGTACTGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCACAGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | GTTCTCAGATCTCCAGCTGCGTGCTGCGAGAACCACTaGTCTCTTCAAAGCTGTCAGACAGGGACATTTAAG | + |
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Preference number: 6 (lower is better) Translates to: VLRSPAACCENH*SLQSCQTGTFK Trigger: CTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCGCAGCACGCAGCTGGAGATCTGAGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CAA 72 bp | CATTTAAGTCTGCAGAGGTTACTGCTGTCTTTTTGTTaGTCTGTGCCCTGCCCCCAGAGGTGGAGCCTACAG | + |
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Preference number: 6 (lower is better) Translates to: HLSLQRLLLSFC*SVPCPQRWSLQ Trigger: CTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS GCA 72 bp | CTGTCTCTGTTAGCCACTTCCTCTTGCAAGTTCTCCTaGACATTGACATCCTGTAATCCCAGCACTTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: LSLLATSSCKFS*TLTSCNPSTLG Trigger: TCCCAAAGTGCTGGGATTACAGGATGTCAATGTGCAGGAGAACTTGCAAGAGGAAGTGGCTAACAGAGACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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| CDS CAA 90 bp | TTCTTTTTAGTCCAGGCTCACCTAGTTCTTGTCAGCTTTCCTCACTaGAGCACCTCTCAGCAGAATGCACCTCCAGTCCCACCTTCTATT | + |
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Preference number: 6 (lower is better) Translates to: FFLVQAHLVLVSFPH*STSQQNAPPVPPSI Trigger: AATAGAAGGTGGGACTGGAGGTGCATTCTGCTGAGAGGTGCTCAAGTGAGGAAAGCTGACAAGAACTAGGTGAGCCTGGACTAAAAAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504333.1 |
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