Pregenerated sensors for LINC02098 (Homo sapiens)
Ensembl gene IDs: ENSG00000272575Ensembl transcript IDs: ENST00000608492.5, ENST00000609260.2, ENST00000650607.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGTGTCTTAGATTTGATGCTGAAGTGGGACATCGGCTTTCTTCTTaGAAGTGTGACTCTTCATTGTATATGGTTGCGAATACTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: QCLRFDAEVGHRLSS*KCDSSLYMVANTLP Trigger: TGGAAGAGTATTCGCAACCATATACAATGAAGAGTCACACTTCCAAGAAGAAAGCCGATGTCCCACTTCAGCATCAAATCTAAGACACTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609260.2 ENST00000650607.1 |
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| CDS CCA 90 bp | TGTACAGAAAAAGTGAAATGCAGTGTCTTAGATTTGATGCTGAAGTaGGACATCGGCTTTCTTCTTGGAAGTGTGACTCTTCATTGTATA | + |
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Preference number: 5 (lower is better) Translates to: CTEKVKCSVLDLMLK*DIGFLLGSVTLHCI Trigger: TATACAATGAAGAGTCACACTTCCAAGAAGAAAGCCGATGTCCCACTTCAGCATCAAATCTAAGACACTGCATTTCACTTTTTCTGTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000609260.2 ENST00000650607.1 |
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| CDS TCA 72 bp | AACCCTGGCTCTCCCACCAGGTATTCAGGTACAGCGTaGGGTCCAAGCAATATTTTTAGTTCCAGGGAACTC | + |
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Preference number: 6 (lower is better) Translates to: NPGSPTRYSGTA*GPSNIFSSREL Trigger: GAGTTCCCTGGAACTAAAAATATTGCTTGGACCTCACGCTGTACCTGAATACCTGGTGGGAGAGCCAGGGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650607.1 |
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| CDS TCA 72 bp | TCCATTCAGCACCCAGTTCAACAGACAACACAAGACTaGTTCAAACCCTGGCTCTCCCACCAGGTATTCAGG | + |
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Preference number: 6 (lower is better) Translates to: SIQHPVQQTTQD*FKPWLSHQVFR Trigger: CCTGAATACCTGGTGGGAGAGCCAGGGTTTGAATCAGTCTTGTGTTGTCTGTTGAACTGGGTGCTGAATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650607.1 |
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| CDS TCA 72 bp | CCCAGGGTTAATGGTCTTTGGAGCCAATATGCTCCCTaGGTTAGCTTTGAAGGTGATTCATTGCTCTGGTAT | + |
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Preference number: 6 (lower is better) Translates to: PRVNGLWSQYAP*VSFEGDSLLWY Trigger: ATACCAGAGCAATGAATCACCTTCAAAGCTAACTCAGGGAGCATATTGGCTCCAAAGACCATTAACCCTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650607.1 |
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| CDS TCA 72 bp | AGCTTTGAAGGTGATTCATTGCTCTGGTATGAAGTTTaGGGACGAGCCAGTTTAGGTGGATTCCATTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SFEGDSLLWYEV*GRASLGGFHSA Trigger: TGCTGAATGGAATCCACCTAAACTGGCTCGTCCTCAAACTTCATACCAGAGCAATGAATCACCTTCAAAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650607.1 |
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| CDS CAA 90 bp | GACATCGGCTTTCTTCTTGGAAGTGTGACTCTTCATTGTATATGGTaGCGAATACTCTTCCAGCTGGCATTTTATACCCTGATGTTACTC | + |
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Preference number: 6 (lower is better) Translates to: DIGFLLGSVTLHCIW*RILFQLAFYTLMLL Trigger: GAGTAACATCAGGGTATAAAATGCCAGCTGGAAGAGTATTCGCAACCATATACAATGAAGAGTCACACTTCCAAGAAGAAAGCCGATGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000609260.2 ENST00000650607.1 |
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| CDS CCA 72 bp | AGATTTGATGCTGAAGTGGGACATCGGCTTTCTTCTTaGAAGTGTGACTCTTCATTGTATATGGTTGCGAAT | + |
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Preference number: 6 (lower is better) Translates to: RFDAEVGHRLSS*KCDSSLYMVAN Trigger: ATTCGCAACCATATACAATGAAGAGTCACACTTCCAAGAAGAAAGCCGATGTCCCACTTCAGCATCAAATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609260.2 ENST00000650607.1 |
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| CDS CCA 72 bp | AAAGTGAAATGCAGTGTCTTAGATTTGATGCTGAAGTaGGACATCGGCTTTCTTCTTGGAAGTGTGACTCTT | + |
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Preference number: 6 (lower is better) Translates to: KVKCSVLDLMLK*DIGFLLGSVTL Trigger: AAGAGTCACACTTCCAAGAAGAAAGCCGATGTCCCACTTCAGCATCAAATCTAAGACACTGCATTTCACTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609260.2 ENST00000650607.1 |
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| CDS CAA 90 bp | CTTTCTCTGTCCAAATATAAAGCATCCAAGAATGAAAAAGATCTTTaGCTTCCAACAGCAACTGGTAGAATTTGTTCCCTCTCAGGTATT | + |
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Preference number: 6 (lower is better) Translates to: LSLSKYKASKNEKDL*LPTATGRICSLSGI Trigger: AATACCTGAGAGGGAACAAATTCTACCAGTTGCTGTTGGAAGCAAAAGATCTTTTTCATTCTTGGATGCTTTATATTTGGACAGAGAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000608492.5 |
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