Pregenerated sensors for LINC02090 (Homo sapiens)

Ensembl gene IDs: ENSG00000230969

Ensembl transcript IDs: ENST00000419151.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GCCTCAGCTCCCTCTCGTTGGCTGTGCCTGTGTTTCTCACTCATCTaGCCAACCCACAGAAGTGGGTGGAGCCGGGTCTGTGCTGGGCTC	+
Preference number: 5 (lower is better) Translates to: ASAPSRWLCLCFSLI*PTHRSGWSRVCAGL Trigger: GAGCCCAGCACAGACCCGGCTCCACCCACTTCTGTGGGTTGGCCAGATGAGTGAGAAACACAGGCACAGCCAACGAGAGGGAGCTGAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS CCA 90 bp	TGGCCAACCCACAGAAGTGGGTGGAGCCGGGTCTGTGCTGGGCTCTaGGGAGCATCTGACGAGTCACTGCAGAAGCAGCACTTTCTGCAG	+
Preference number: 5 (lower is better) Translates to: WPTHRSGWSRVCAGL*GASDESLQKQHFLQ Trigger: CTGCAGAAAGTGCTGCTTCTGCAGTGACTCGTCAGATGCTCCCCAGAGCCCAGCACAGACCCGGCTCCACCCACTTCTGTGGGTTGGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS TCA 90 bp	GCAGCCACAAAGCACAAGTGCACTGCTGAGCACCTGAAATGTACCTaGTGGGGGTGCAGCTGTGCTCTGCCCTGCCTGTCCGCGCTCGTT	+
Preference number: 5 (lower is better) Translates to: AATKHKCTAEHLKCT*WGCSCALPCLSALV Trigger: AACGAGCGCGGACAGGCAGGGCAGAGCACAGCTGCACCCCCATCAGGTACATTTCAGGTGCTCAGCAGTGCACTTGTGCTTTGTGGCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS GCA 90 bp	GGAAAAAGACTCCTGGGTCCGGCCTCAGCTCCCTCTCGTTGGCTGTaGCTGTGTTTCTCACTCATCTGGCCAACCCACAGAAGTGGGTGG	+
Preference number: 5 (lower is better) Translates to: GKRLLGPASAPSRWL*LCFSLIWPTHRSGW Trigger: CCACCCACTTCTGTGGGTTGGCCAGATGAGTGAGAAACACAGGCACAGCCAACGAGAGGGAGCTGAGGCCGGACCCAGGAGTCTTTTTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS GCA 90 bp	CTGATGGGGGTGCAGCTGTGCTCTGCCCTGCCTGTCCGCGCTCGTTaGTGTGTGGCTTGTGTCTTTGACCTGTTCTGTGATGCTCCATTA	+
Preference number: 5 (lower is better) Translates to: LMGVQLCSALPVRAR*CVACVFDLFCDAPL Trigger: TAATGGAGCATCACAGAACAGGTCAAAGACACAAGCCACACAGCAACGAGCGCGGACAGGCAGGGCAGAGCACAGCTGCACCCCCATCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS CCA 90 bp	ACCATAGGAAAAAGACTCCTGGGTCCGGCCTCAGCTCCCTCTCGTTaGCTGTGCCTGTGTTTCTCACTCATCTGGCCAACCCACAGAAGT	+
Preference number: 5 (lower is better) Translates to: TIGKRLLGPASAPSR*LCLCFSLIWPTHRS Trigger: ACTTCTGTGGGTTGGCCAGATGAGTGAGAAACACAGGCACAGCCAACGAGAGGGAGCTGAGGCCGGACCCAGGAGTCTTTTTCCTATGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS CCA 72 bp	CCTGTGTTTCTCACTCATCTGGCCAACCCACAGAAGTaGGTGGAGCCGGGTCTGTGCTGGGCTCTGGGGAGC	+
Preference number: 6 (lower is better) Translates to: PVFLTHLANPQK*VEPGLCWALGS Trigger: GCTCCCCAGAGCCCAGCACAGACCCGGCTCCACCCACTTCTGTGGGTTGGCCAGATGAGTGAGAAACACAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS GCA 72 bp	CTCCTGGGTCCGGCCTCAGCTCCCTCTCGTTGGCTGTaGCTGTGTTTCTCACTCATCTGGCCAACCCACAGA	+
Preference number: 6 (lower is better) Translates to: LLGPASAPSRWL*LCFSLIWPTHR Trigger: TCTGTGGGTTGGCCAGATGAGTGAGAAACACAGGCACAGCCAACGAGAGGGAGCTGAGGCCGGACCCAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS GCA 72 bp	GTGCAGCTGTGCTCTGCCCTGCCTGTCCGCGCTCGTTaGTGTGTGGCTTGTGTCTTTGACCTGTTCTGTGAT	+
Preference number: 6 (lower is better) Translates to: VQLCSALPVRAR*CVACVFDLFCD Trigger: ATCACAGAACAGGTCAAAGACACAAGCCACACAGCAACGAGCGCGGACAGGCAGGGCAGAGCACAGCTGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS CAA 90 bp	GCTCTGCCCTGCCTGTCCGCGCTCGTTGCTGTGTGGCTTGTGTCTTaGACCTGTTCTGTGATGCTCCATTACAAGAGCACATTGCATCAC	+
Preference number: 6 (lower is better) Translates to: ALPCLSALVAVWLVS*TCSVMLHYKSTLHH Trigger: GTGATGCAATGTGCTCTTGTAATGGAGCATCACAGAACAGGTCAAAGACACAAGCCACACAGCAACGAGCGCGGACAGGCAGGGCAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS CAA 72 bp	TGCCTGTCCGCGCTCGTTGCTGTGTGGCTTGTGTCTTaGACCTGTTCTGTGATGCTCCATTACAAGAGCACA	+
Preference number: 6 (lower is better) Translates to: CLSALVAVWLVS*TCSVMLHYKST Trigger: TGTGCTCTTGTAATGGAGCATCACAGAACAGGTCAAAGACACAAGCCACACAGCAACGAGCGCGGACAGGCA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS GCA 72 bp	GAGCATCTGACGAGTCACTGCAGAAGCAGCACTTTCTaGAGGAAGAACAGAAGTGTCTGCCTGTCTCTCACT	+
Preference number: 6 (lower is better) Translates to: EHLTSHCRSSTF*RKNRSVCLSLT Trigger: AGTGAGAGACAGGCAGACACTTCTGTTCTTCCTGCAGAAAGTGCTGCTTCTGCAGTGACTCGTCAGATGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS CAA 90 bp	CTTGTGTCTTTGACCTGTTCTGTGATGCTCCATTACAAGAGCACATaGCATCACATTCATCCCTTTCCCGGTTACTATATCAGGCAGGAC	+
Preference number: 6 (lower is better) Translates to: LVSLTCSVMLHYKST*HHIHPFPGYYIRQD Trigger: GTCCTGCCTGATATAGTAACCGGGAAAGGGATGAATGTGATGCAATGTGCTCTTGTAATGGAGCATCACAGAACAGGTCAAAGACACAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2
CDS CAA 72 bp	TTGACCTGTTCTGTGATGCTCCATTACAAGAGCACATaGCATCACATTCATCCCTTTCCCGGTTACTATATC	+
Preference number: 6 (lower is better) Translates to: LTCSVMLHYKST*HHIHPFPGYYI Trigger: GATATAGTAACCGGGAAAGGGATGAATGTGATGCAATGTGCTCTTGTAATGGAGCATCACAGAACAGGTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419151.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu