Pregenerated sensors for LINC02089 (Homo sapiens)
Ensembl gene IDs: ENSG00000226364Ensembl transcript IDs: ENST00000412360.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTTCAGATGTTCAGATGTGTCCAGAGTTTGTTTCTTCCTTCTGGTaGGTTCATGGTCTTGCTGACTTCAGAAATGAAGCCGCAGACCTG | + |
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Preference number: 5 (lower is better) Translates to: PSDVQMCPEFVSSFW*VHGLADFRNEAADL Trigger: CAGGTCTGCGGCTTCATTTCTGAAGTCAGCAAGACCATGAACCCACCAGAAGGAAGAAACAAACTCTGGACACATCTGAACATCTGAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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| CDS CCA 90 bp | TTTCCTTCAGATGTTCAGATGTGTCCAGAGTTTGTTTCTTCCTTCTaGTGGGTTCATGGTCTTGCTGACTTCAGAAATGAAGCCGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: FPSDVQMCPEFVSSF*WVHGLADFRNEAAD Trigger: GTCTGCGGCTTCATTTCTGAAGTCAGCAAGACCATGAACCCACCAGAAGGAAGAAACAAACTCTGGACACATCTGAACATCTGAAGGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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| CDS CCA 72 bp | GGTCGCCAAAATGTGTCCGGAATTGGTTCCTTCTGGTaGGTTCTTCGTCTCATTGCTTCAAGAATGAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: GRQNVSGIGSFW*VLRLIASRMKP Trigger: TGGCTTCATTCTTGAAGCAATGAGACGAAGAACCCACCAGAAGGAACCAATTCCGGACACATTTTGGCGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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| CDS CAA 72 bp | CAGAGTTTGTTTCTTCCTTCTGGTGGGTTCATGGTCTaGCTGACTTCAGAAATGAAGCCGCAGACCTGCACA | + |
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Preference number: 6 (lower is better) Translates to: QSLFLPSGGFMV*LTSEMKPQTCT Trigger: TGTGCAGGTCTGCGGCTTCATTTCTGAAGTCAGCAAGACCATGAACCCACCAGAAGGAAGAAACAAACTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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| CDS CAA 90 bp | AGATGTGTCCAGAGTTTGTTTCTTCCTTCTGGTGGGTTCATGGTCTaGCTGACTTCAGAAATGAAGCCGCAGACCTGCACAGTCAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: RCVQSLFLPSGGFMV*LTSEMKPQTCTVSL Trigger: AAGACTGACTGTGCAGGTCTGCGGCTTCATTTCTGAAGTCAGCAAGACCATGAACCCACCAGAAGGAAGAAACAAACTCTGGACACATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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| CDS GCA 72 bp | ATGGTCTTGCTGACTTCAGAAATGAAGCCGCAGACCTaGACAGTCAGTCTTACAGCTCATAAAGGTAGTGCA | + |
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Preference number: 6 (lower is better) Translates to: MVLLTSEMKPQT*TVSLTAHKGSA Trigger: TGCACTACCTTTATGAGCTGTAAGACTGACTGTGCAGGTCTGCGGCTTCATTTCTGAAGTCAGCAAGACCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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| CDS CCA 72 bp | TGTGGTCGCCAAAATGTGTCCGGAATTGGTTCCTTCTaGTGGGTTCTTCGTCTCATTGCTTCAAGAATGAAG | + |
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Preference number: 6 (lower is better) Translates to: CGRQNVSGIGSF*WVLRLIASRMK Trigger: CTTCATTCTTGAAGCAATGAGACGAAGAACCCACCAGAAGGAACCAATTCCGGACACATTTTGGCGACCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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| CDS TCA 72 bp | GTCTCAGAATGGTTTCCAGTGGGCACTGACAAATGTTaGGTATTAGACCACCGCTTGGTGATAGTCGATTTT | + |
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Preference number: 6 (lower is better) Translates to: VSEWFPVGTDKC*VLDHRLVIVDF Trigger: AAAATCGACTATCACCAAGCGGTGGTCTAATACTCAACATTTGTCAGTGCCCACTGGAAACCATTCTGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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| CDS TCA 72 bp | ATGGGGTCACTGATATCCAAGTTGTTTGCAGGAGTTTaGGGTCATCAGTTCAGCAATAATTCACATCATTAC | + |
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Preference number: 6 (lower is better) Translates to: MGSLISKLFAGV*GHQFSNNSHHY Trigger: GTAATGATGTGAATTATTGCTGAACTGATGACCTCAAACTCCTGCAAACAACTTGGATATCAGTGACCCCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412360.1 |
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