RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02080 (Homo sapiens)

Ensembl gene IDs: ENSG00000267065

Ensembl transcript IDs: ENST00000585863.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CCTCAGCCCTTGGGTGGTCGATGGGACTGGGTGCCCTGGAGCAGGTaGCGGCGCTCATTGGGGAGGCTCGGGCAGGGCAGGAGCCCACGG +
Preference number: 5 (lower is better)
Translates to: PQPLGGRWDWVPWSR*RRSLGRLGQGRSPR
Trigger: CCGTGGGCTCCTGCCCTGCCCGAGCCTCCCCAATGAGCGCCGCCACCTGCTCCAGGGCACCCAGTCCCATCGACCACCCAAGGGCTGAGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 90 bp GCCTGCACTCCTCAGCCCTTGGGTGGTCGATGGGACTGGGTGCCCTaGAGCAGGTGGCGGCGCTCATTGGGGAGGCTCGGGCAGGGCAGG +
Preference number: 5 (lower is better)
Translates to: ACTPQPLGGRWDWVP*SRWRRSLGRLGQGR
Trigger: CCTGCCCTGCCCGAGCCTCCCCAATGAGCGCCGCCACCTGCTCCAGGGCACCCAGTCCCATCGACCACCCAAGGGCTGAGGAGTGCAGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 90 bp AGTCCCGCGCCATGCGCCTGCACTCCTCAGCCCTTGGGTGGTCGATaGGACTGGGTGCCCTGGAGCAGGTGGCGGCGCTCATTGGGGAGG +
Preference number: 5 (lower is better)
Translates to: SPAPCACTPQPLGGR*DWVPWSRWRRSLGR
Trigger: CCTCCCCAATGAGCGCCGCCACCTGCTCCAGGGCACCCAGTCCCATCGACCACCCAAGGGCTGAGGAGTGCAGGCGCATGGCGCGGGACT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 90 bp GCCTGCCAGTCCCGCGCCATGCGCCTGCACTCCTCAGCCCTTGGGTaGTCGATGGGACTGGGTGCCCTGGAGCAGGTGGCGGCGCTCATT +
Preference number: 5 (lower is better)
Translates to: ACQSRAMRLHSSALG*SMGLGALEQVAALI
Trigger: AATGAGCGCCGCCACCTGCTCCAGGGCACCCAGTCCCATCGACCACCCAAGGGCTGAGGAGTGCAGGCGCATGGCGCGGGACTGGCAGGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS GCA 90 bp TCCCACACTGGGCCGCAAGTGGAGCTGCCTGCCAGTCCCGCGCCATaGGCCTGCACTCCTCAGCCCTTGGGTGGTCGATGGGACTGGGTG +
Preference number: 5 (lower is better)
Translates to: SHTGPQVELPASPAP*ACTPQPLGGRWDWV
Trigger: CACCCAGTCCCATCGACCACCCAAGGGCTGAGGAGTGCAGGCGCATGGCGCGGGACTGGCAGGCAGCTCCACTTGCGGCCCAGTGTGGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 90 bp CTCCAAGTCCCCACCAGACTCAGGAGCCCAGCTGGCTTCACCCAGTaGATCCCACACTGGGCCGCAAGTGGAGCTGCCTGCCAGTCCCGC +
Preference number: 5 (lower is better)
Translates to: LQVPTRLRSPAGFTQ*IPHWAASGAACQSR
Trigger: GCGGGACTGGCAGGCAGCTCCACTTGCGGCCCAGTGTGGGATCCACTGGGTGAAGCCAGCTGGGCTCCTGAGTCTGGTGGGGACTTGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 90 bp AGACATAAAGATTCTCCAAGTCCCCACCAGACTCAGGAGCCCAGCTaGCTTCACCCAGTGGATCCCACACTGGGCCGCAAGTGGAGCTGC +
Preference number: 5 (lower is better)
Translates to: RHKDSPSPHQTQEPS*LHPVDPTLGRKWSC
Trigger: GCAGCTCCACTTGCGGCCCAGTGTGGGATCCACTGGGTGAAGCCAGCTGGGCTCCTGAGTCTGGTGGGGACTTGGAGAATCTTTATGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS TCA 90 bp CTAGTCAAAACCCAGGGCCCACATACCCTACCTATCCCATGCATGTaGGACGCTCACACTATCAACATAAAAAGTCCCTTAGTATCACCT +
Preference number: 5 (lower is better)
Translates to: LVKTQGPHTLPIPCM*DAHTINIKSPLVSP
Trigger: AGGTGATACTAAGGGACTTTTTATGTTGATAGTGTGAGCGTCTCACATGCATGGGATAGGTAGGGTATGTGGGCCCTGGGTTTTGACTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS GCA 72 bp GGGCCGCAAGTGGAGCTGCCTGCCAGTCCCGCGCCATaGGCCTGCACTCCTCAGCCCTTGGGTGGTCGATGG +
Preference number: 6 (lower is better)
Translates to: GPQVELPASPAP*ACTPQPLGGRW
Trigger: CCATCGACCACCCAAGGGCTGAGGAGTGCAGGCGCATGGCGCGGGACTGGCAGGCAGCTCCACTTGCGGCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 72 bp TTGGGTGGTCGATGGGACTGGGTGCCCTGGAGCAGGTaGCGGCGCTCATTGGGGAGGCTCGGGCAGGGCAGG +
Preference number: 6 (lower is better)
Translates to: LGGRWDWVPWSR*RRSLGRLGQGR
Trigger: CCTGCCCTGCCCGAGCCTCCCCAATGAGCGCCGCCACCTGCTCCAGGGCACCCAGTCCCATCGACCACCCAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 72 bp CCTCAGCCCTTGGGTGGTCGATGGGACTGGGTGCCCTaGAGCAGGTGGCGGCGCTCATTGGGGAGGCTCGGG +
Preference number: 6 (lower is better)
Translates to: PQPLGGRWDWVP*SRWRRSLGRLG
Trigger: CCCGAGCCTCCCCAATGAGCGCCGCCACCTGCTCCAGGGCACCCAGTCCCATCGACCACCCAAGGGCTGAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CAA 72 bp GCCAGTCCCGCGCCATGCGCCTGCACTCCTCAGCCCTaGGGTGGTCGATGGGACTGGGTGCCCTGGAGCAGG +
Preference number: 6 (lower is better)
Translates to: ASPAPCACTPQP*GGRWDWVPWSR
Trigger: CCTGCTCCAGGGCACCCAGTCCCATCGACCACCCAAGGGCTGAGGAGTGCAGGCGCATGGCGCGGGACTGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS GCA 72 bp CACCCAGTGGATCCCACACTGGGCCGCAAGTGGAGCTaGCTGCCAGTCCCGCGCCATGCGCCTGCACTCCTC +
Preference number: 6 (lower is better)
Translates to: HPVDPTLGRKWS*LPVPRHAPALL
Trigger: GAGGAGTGCAGGCGCATGGCGCGGGACTGGCAGGCAGCTCCACTTGCGGCCCAGTGTGGGATCCACTGGGTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS GCA 72 bp CAAGTGGAGCTGCCTGCCAGTCCCGCGCCATGCGCCTaGACTCCTCAGCCCTTGGGTGGTCGATGGGACTGG +
Preference number: 6 (lower is better)
Translates to: QVELPASPAPCA*TPQPLGGRWDW
Trigger: CCAGTCCCATCGACCACCCAAGGGCTGAGGAGTGCAGGCGCATGGCGCGGGACTGGCAGGCAGCTCCACTTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 72 bp TGGCTTCACCCAGTGGATCCCACACTGGGCCGCAAGTaGAGCTGCCTGCCAGTCCCGCGCCATGCGCCTGCA +
Preference number: 6 (lower is better)
Translates to: WLHPVDPTLGRK*SCLPVPRHAPA
Trigger: TGCAGGCGCATGGCGCGGGACTGGCAGGCAGCTCCACTTGCGGCCCAGTGTGGGATCCACTGGGTGAAGCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 72 bp CCCACCAGACTCAGGAGCCCAGCTGGCTTCACCCAGTaGATCCCACACTGGGCCGCAAGTGGAGCTGCCTGC +
Preference number: 6 (lower is better)
Translates to: PTRLRSPAGFTQ*IPHWAASGAAC
Trigger: GCAGGCAGCTCCACTTGCGGCCCAGTGTGGGATCCACTGGGTGAAGCCAGCTGGGCTCCTGAGTCTGGTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CAA 72 bp TGCCCCGCAGGGAGGCAGCTAAGGCCGGGCGAGAAATaGAGCACAGCAGCTGCTGGCCCAGGTGCTAAGCCT +
Preference number: 6 (lower is better)
Translates to: CPAGRQLRPGEK*STAAAGPGAKP
Trigger: AGGCTTAGCACCTGGGCCAGCAGCTGCTGTGCTCAATTTCTCGCCCGGCCTTAGCTGCCTCCCTGCGGGGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CAA 90 bp CCGGAGCCCTGCCCCGCAGGGAGGCAGCTAAGGCCGGGCGAGAAATaGAGCACAGCAGCTGCTGGCCCAGGTGCTAAGCCTCTCAATATC +
Preference number: 6 (lower is better)
Translates to: PEPCPAGRQLRPGEK*STAAAGPGAKPLNI
Trigger: GATATTGAGAGGCTTAGCACCTGGGCCAGCAGCTGCTGTGCTCAATTTCTCGCCCGGCCTTAGCTGCCTCCCTGCGGGGCAGGGCTCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS TCA 72 bp GGAGAATGGTTTGAAACCAGGAGGCAGAGGTTGCGGTaGGCTGAGATCACGCAGTTGCACTCCAGTCTGGGC +
Preference number: 6 (lower is better)
Translates to: GEWFETRRQRLR*AEITQLHSSLG
Trigger: GCCCAGACTGGAGTGCAACTGCGTGATCTCAGCTCACCGCAACCTCTGCCTCCTGGTTTCAAACCATTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CCA 72 bp AAAGGGGTCCCTACCCAGACCCTAAGGGAGGGTTCCTaGATCTTGTGCAGGAAGGAATTCAAGGCAAGTCAC +
Preference number: 6 (lower is better)
Translates to: KGVPTQTLREGS*ILCRKEFKASH
Trigger: GTGACTTGCCTTGAATTCCTTCCTGCACAAGATCCAGGAACCCTCCCTTAGGGTCTGGGTAGGGACCCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS CAA 72 bp GTCCCTACCCAGACCCTAAGGGAGGGTTCCTGGATCTaGTGCAGGAAGGAATTCAAGGCAAGTCACAGAGTG +
Preference number: 6 (lower is better)
Translates to: VPTQTLREGSWI*CRKEFKASHRV
Trigger: CACTCTGTGACTTGCCTTGAATTCCTTCCTGCACAAGATCCAGGAACCCTCCCTTAGGGTCTGGGTAGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS GCA 72 bp TCTTGTGCAGGAAGGAATTCAAGGCAAGTCACAGAGTaGAGTAAGAAGAGATCACTGGCCAGGCGCAGTGGC +
Preference number: 6 (lower is better)
Translates to: SCAGRNSRQVTE*SKKRSLARRSG
Trigger: GCCACTGCGCCTGGCCAGTGATCTCTTCTTACTGCACTCTGTGACTTGCCTTGAATTCCTTCCTGCACAAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS TCA 72 bp ACCCAGGGCCCACATACCCTACCTATCCCATGCATGTaGGACGCTCACACTATCAACATAAAAAGTCCCTTA +
Preference number: 6 (lower is better)
Translates to: TQGPHTLPIPCM*DAHTINIKSPL
Trigger: TAAGGGACTTTTTATGTTGATAGTGTGAGCGTCTCACATGCATGGGATAGGTAGGGTATGTGGGCCCTGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS TCA 72 bp TTTACAGAGAGCCGATTGGTCTGTTTTACAGACAGCTaGTTGGTCCATTTTGACAGAGTGCTGATTGGTGCG +
Preference number: 6 (lower is better)
Translates to: FTESRLVCFTDS*LVHFDRVLIGA
Trigger: CGCACCAATCAGCACTCTGTCAAAATGGACCAATCAGCTGTCTGTAAAACAGACCAATCGGCTCTCTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000585863.2
CDS TCA 72 bp TCAGTTAGAAGGAAAGGTAGGAGAGGCTCAATATCTTaGAAACAATGCTCATTTGCATACATGGATAAATAC +
Preference number: 6 (lower is better)
Translates to: SVRRKGRRGSIS*KQCSFAYMDKY
Trigger: GTATTTATCCATGTATGCAAATGAGCATTGTTTTCAAGATATTGAGCCTCTCCTACCTTTCCTTCTAACTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000585863.2