Pregenerated sensors for LINC02065 (Homo sapiens)
Ensembl gene IDs: ENSG00000248846Ensembl transcript IDs: ENST00000509924.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGAAGTTGGCCTGCAGCTGGGGAGAGTGAGGCTGACACCTGTTGGTaGGCACAGGTTGAAAGAGTCCTAATTCAGGCCCCATCAGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: GSWPAAGESEADTCW*AQVERVLIQAPSVA Trigger: AGCAACTGATGGGGCCTGAATTAGGACTCTTTCAACCTGTGCTCACCAACAGGTGTCAGCCTCACTCTCCCCAGCTGCAGGCCAACTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS GCA 90 bp | GAGACGTCCTCACACGTGAGACGTCCTCGCCACTCTCTCTCCTCCTaGTGCAGTTCAGGTCCTCATCAGTTCTCATTCCGATTCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: ETSSHVRRPRHSLSS*CSSGPHQFSFRFFL Trigger: CAGGAAGAATCGGAATGAGAACTGATGAGGACCTGAACTGCAGCAGGAGGAGAGAGAGTGGCGAGGACGTCTCACGTGTGAGGACGTCTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS TCA 90 bp | TTGATGTCTGGTGAGGGCCTGCTTCCTCATAGATGGCACTTTCTATaGGTCTTCACATGGCAGAAGGGGCTAATAAGCTTCTTCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: LMSGEGLLPHRWHFL*VFTWQKGLISFFRP Trigger: AGGCCTGAAGAAGCTTATTAGCCCCTTCTGCCATGTGAAGACTCATAGAAAGTGCCATCTATGAGGAAGCAGGCCCTCACCAGACATCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS CCA 90 bp | ACACAGCTCTCCAATCTCTGCTTCCATTGTCACATGACATTCTCCTaGTGTGTGCCCTTGTGTATCTCTTCCTCTTCTTATAATGACACC | + |
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Preference number: 5 (lower is better) Translates to: TQLSNLCFHCHMTFS*CVPLCISSSSYNDT Trigger: GGTGTCATTATAAGAAGAGGAAGAGATACACAAGGGCACACACCAGGAGAATGTCATGTGACAATGGAAGCAGAGATTGGAGAGCTGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS TCA 72 bp | CCTGCAGCTGGGGAGAGTGAGGCTGACACCTGTTGGTaGGCACAGGTTGAAAGAGTCCTAATTCAGGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: PAAGESEADTCW*AQVERVLIQAP Trigger: TGGGGCCTGAATTAGGACTCTTTCAACCTGTGCTCACCAACAGGTGTCAGCCTCACTCTCCCCAGCTGCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS TCA 72 bp | TCTGAAGTCAAGGTGTCAGTAGGTCCACGCTGTCTCTaGAGGCTCAAGGTGGGAGTCCGTTCCACGCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: SEVKVSVGPRCL*RLKVGVRSTPF Trigger: GAAAGGCGTGGAACGGACTCCCACCTTGAGCCTTCAGAGACAGCGTGGACCTACTGACACCTTGACTTCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS CAA 90 bp | TTCACAGTTCTGGAGGCTGGGAAGCCCAAGATCAAGGCAGCAGCATaGATGTCTGGTGAGGGCCTGCTTCCTCATAGATGGCACTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: FTVLEAGKPKIKAAA*MSGEGLLPHRWHFL Trigger: TAGAAAGTGCCATCTATGAGGAAGCAGGCCCTCACCAGACATCAATGCTGCTGCCTTGATCTTGGGCTTCCCAGCCTCCAGAACTGTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS TCA 72 bp | GGTGAGGGCCTGCTTCCTCATAGATGGCACTTTCTATaGGTCTTCACATGGCAGAAGGGGCTAATAAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: GEGLLPHRWHFL*VFTWQKGLISF Trigger: GAAGCTTATTAGCCCCTTCTGCCATGTGAAGACTCATAGAAAGTGCCATCTATGAGGAAGCAGGCCCTCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS CCA 72 bp | TTGGAGGTAGCATCTCCGGATCTCAAGGATTGTGCATaGGAAGGTGAAAGGATTCCAGATGATGCTCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: LEVASPDLKDCA*EGERIPDDAQQ Trigger: TTGCTGAGCATCATCTGGAATCCTTTCACCTTCCCATGCACAATCCTTGAGATCCGGAGATGCTACCTCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS CCA 72 bp | AGGTGGGAGTCCGTTCCACGCCTTTCTCTTAGCTTTTaGTGTTGCCAGCAATCCTTGATGTTACTTGGCTTA | + |
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Preference number: 6 (lower is better) Translates to: RWESVPRLSLSF*CCQQSLMLLGL Trigger: TAAGCCAAGTAACATCAAGGATTGCTGGCAACACCAAAAGCTAAGAGAAAGGCGTGGAACGGACTCCCACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS TCA 72 bp | GTGAAAGGATTCCAGATGATGCTCAGCAACTGGGCTTaGGTAGTTGTGTTGAAGGTGGTGCCAATAAATGAC | + |
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Preference number: 6 (lower is better) Translates to: VKGFQMMLSNWA*VVVLKVVPIND Trigger: GTCATTTATTGGCACCACCTTCAACACAACTACTCAAGCCCAGTTGCTGAGCATCATCTGGAATCCTTTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS CCA 72 bp | AAACAACAGAAATTCATTGTTCACAGTTCTGGAGGCTaGGAAGCCCAAGATCAAGGCAGCAGCATTGATGTC | + |
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Preference number: 6 (lower is better) Translates to: KQQKFIVHSSGG*EAQDQGSSIDV Trigger: GACATCAATGCTGCTGCCTTGATCTTGGGCTTCCCAGCCTCCAGAACTGTGAACAATGAATTTCTGTTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS TCA 72 bp | GCCTTTCTCTTAGCTTTTGGTGTTGCCAGCAATCCTTaGTGTTACTTGGCTTATAGACACAGCTCTCCAATC | + |
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Preference number: 6 (lower is better) Translates to: AFLLAFGVASNP*CYLAYRHSSPI Trigger: GATTGGAGAGCTGTGTCTATAAGCCAAGTAACATCAAGGATTGCTGGCAACACCAAAAGCTAAGAGAAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS TCA 72 bp | CAGAAATTTATTCTCTCAAAGTTCTGGCTAGAAGTCTaGAGTCAAGGTGTCAGTAGGTCCACGCTGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: QKFILSKFWLEV*SQGVSRSTLSL Trigger: CAGAGACAGCGTGGACCTACTGACACCTTGACTTCAGACTTCTAGCCAGAACTTTGAGAGAATAAATTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS GCA 72 bp | GAACACAATTCTACCCACTGCAGCATGTACCCCTACTaGTTCTATGAATACAGAACTCTACAGGCTGTCATT | + |
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Preference number: 6 (lower is better) Translates to: EHNSTHCSMYPY*FYEYRTLQAVI Trigger: AATGACAGCCTGTAGAGTTCTGTATTCATAGAAGCAGTAGGGGTACATGCTGCAGTGGGTAGAATTGTGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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| CDS TCA 72 bp | GGATATGACATTAAACTGAGACTTGAAGGATGGCAGTaGATCAGCCATGGGAAAGATAAGGAGAATGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: GYDIKLRLEGWQ*ISHGKDKENVP Trigger: TGGAACATTCTCCTTATCTTTCCCATGGCTGATTCACTGCCATCCTTCAAGTCTCAGTTTAATGTCATATCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509924.3 |
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