Pregenerated sensors for LINC02062 (Homo sapiens)
Ensembl gene IDs: ENSG00000248489Ensembl transcript IDs: ENST00000513175.1, ENST00000670964.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGCCAATGGTGTAACTCTCAGTTGGAGGCTGAACGCCTGAGAATCTaGGAGCTGCTGGTGTTAAGCCCTGGAGTCCAAAGGCCGGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: SQWCNSQLEAERLRI*ELLVLSPGVQRPEP Trigger: AGGCTCCGGCCTTTGGACTCCAGGGCTTAACACCAGCAGCTCCCAGATTCTCAGGCGTTCAGCCTCCAACTGAGAGTTACACCATTGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513175.1 |
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| CDS TCA 90 bp | GTAATGGGATGGCAGGGTCAAATGGTATATCTAGTTCTAGATCCCTaGGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC | + |
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Preference number: 5 (lower is better) Translates to: VMGWQGQMVYLVLDP*GIATLTSTMVELVY Trigger: GTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGATATACCATTTGACCCTGCCATCCCATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS GCA 90 bp | CTCATTATTTCATGGCTTTATTTTTCCTGGTCCCAATTCTCTACTTaGATTAGGCTATGGTCTCTTCACCACTTTCTAGGAAACCCCTTT | + |
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Preference number: 5 (lower is better) Translates to: LIISWLYFSWSQFST*IRLWSLHHFLGNPF Trigger: AAAGGGGTTTCCTAGAAAGTGGTGAAGAGACCATAGCCTAATGCAAGTAGAGAATTGGGACCAGGAAAAATAAAGCCATGAAATAATGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000513175.1 ENST00000670964.1 |
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| CDS TCA 90 bp | GTTCCTCTTCACCTTATCATGTCATGTATTCCTTTAAACAACCCATaGGCTGGATATCATTATTCTCGTTTCATACATGAGAAACAGGCT | + |
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Preference number: 5 (lower is better) Translates to: VPLHLIMSCIPLNNP*AGYHYSRFIHEKQA Trigger: AGCCTGTTTCTCATGTATGAAACGAGAATAATGATATCCAGCTCATGGGTTGTTTAAAGGAATACATGACATGATAAGGTGAAGAGGAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CCA 72 bp | ATGGTCTCTTCACCACTTTCTAGGAAACCCCTTTCATaGCAGCATCTGTTCCTCTTCACCCGCACGGAGCGA | + |
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Preference number: 6 (lower is better) Translates to: MVSSPLSRKPLS*QHLFLFTRTER Trigger: TCGCTCCGTGCGGGTGAAGAGGAACAGATGCTGCCATGAAAGGGGTTTCCTAGAAAGTGGTGAAGAGACCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513175.1 |
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| CDS CAA 72 bp | CCTCAAAATCAGGAAAGCCAATGGTGTAACTCTCAGTaGGAGGCTGAACGCCTGAGAATCTGGGAGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: PQNQESQWCNSQ*EAERLRIWELL Trigger: CAGCAGCTCCCAGATTCTCAGGCGTTCAGCCTCCAACTGAGAGTTACACCATTGGCTTTCCTGATTTTGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513175.1 |
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| CDS TCA 72 bp | TATTTCTCCACACCCTCTCCGGCACCTGTTGTTTCCTaGCTTTTTAATGATCGCCATTCTAACTGGTGTGAG | + |
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Preference number: 6 (lower is better) Translates to: YFSTPSPAPVVS*LFNDRHSNWCE Trigger: CTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCCGGAGAGGGTGTGGAGAAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS TCA 72 bp | TGGCAGGGTCAAATGGTATATCTAGTTCTAGATCCCTaGGGAATCGCCACACTGACTTCCACAATGGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: WQGQMVYLVLDP*GIATLTSTMVE Trigger: TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGATATACCATTTGACCCTGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 90 bp | CTTGCCTCTTTCTCTGACCTCGCGTGGTGCCATCTGCGTTTTGAATaGGGAGTATTAAGTTTCTCTGCTCAAATAAGTGAAATCATGCAG | + |
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Preference number: 6 (lower is better) Translates to: LASFSDLAWCHLRFE*GVLSFSAQISEIMQ Trigger: CTGCATGATTTCACTTATTTGAGCAGAGAAACTTAATACTCCCAATTCAAAACGCAGATGGCACCACGCGAGGTCAGAGAAAGAGGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS GCA 72 bp | CTAAAACTTCTTGCCTCTTTCTCTGACCTCGCGTGGTaGCATCTGCGTTTTGAATTGGGAGTATTAAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: LKLLASFSDLAW*HLRFELGVLSF Trigger: GAAACTTAATACTCCCAATTCAAAACGCAGATGGCACCACGCGAGGTCAGAGAAAGAGGCAAGAAGTTTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CCA 72 bp | ATGGTCTCTTCACCACTTTCTAGGAAACCCCTTTCATaGCAGCATCTGTTCCTCTTCACCTTATCATGTCAT | + |
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Preference number: 6 (lower is better) Translates to: MVSSPLSRKPLS*QHLFLFTLSCH Trigger: ATGACATGATAAGGTGAAGAGGAACAGATGCTGCCATGAAAGGGGTTTCCTAGAAAGTGGTGAAGAGACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 72 bp | ATCATGCAGTATTTGTCCTTCTGTGACTGGCTTGCTTaGCTTAATGTAATGTCCTCAAGGTTCATCCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: IMQYLSFCDWLA*LNVMSSRFIQW Trigger: CCACTGGATGAACCTTGAGGACATTACATTAAGCAAAGCAAGCCAGTCACAGAAGGACAAATACTGCATGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 72 bp | TTCTCTGACCTCGCGTGGTGCCATCTGCGTTTTGAATaGGGAGTATTAAGTTTCTCTGCTCAAATAAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: FSDLAWCHLRFE*GVLSFSAQISE Trigger: TTCACTTATTTGAGCAGAGAAACTTAATACTCCCAATTCAAAACGCAGATGGCACCACGCGAGGTCAGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 72 bp | TTCCAGTTTCTCCACATTCTTGCCAACCCTTGTTTTTaGTTTCCTTTGATAGTAACCATCCTGACAGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: FQFLHILANPCF*FPLIVTILTGV Trigger: CACACCTGTCAGGATGGTTACTATCAAAGGAAACAAAAAACAAGGGTTGGCAAGAATGTGGAGAAACTGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 90 bp | GAACACAGGAGTGCTAACATCTTTGAGATCCTGATTTCAATTGTTTaGGATATACAGTCAGAAGTGGGATTGCAGAATCACACAGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: EHRSANIFEILISIV*DIQSEVGLQNHTVV Trigger: GACTACTGTGTGATTCTGCAATCCCACTTCTGACTGTATATCCAAAACAATTGAAATCAGGATCTCAAAGATGTTAGCACTCCTGTGTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS GCA 72 bp | GCTAAAAAGTTAAGCGATGATCAAGTACACGTAGACTaGATATGGCAAGCCAATAATCAAAGACAGGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: AKKLSDDQVHVD*IWQANNQRQVD Trigger: GTCAACCTGTCTTTGATTATTGGCTTGCCATATGCAGTCTACGTGTACTTGATCATCGCTTAACTTTTTAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CCA 72 bp | ATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATaGCAGGGTCAAATGGTATATCTAGTTCTAGATCCC | + |
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Preference number: 6 (lower is better) Translates to: IYSPLGIYPVMG*QGQMVYLVLDP Trigger: GGGATCTAGAACTAGATATACCATTTGACCCTGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CCA 72 bp | ATAAGTGAAATCATGCAGTATTTGTCCTTCTGTGACTaGCTTGCTTTGCTTAATGTAATGTCCTCAAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: ISEIMQYLSFCD*LALLNVMSSRF Trigger: GAACCTTGAGGACATTACATTAAGCAAAGCAAGCCAGTCACAGAAGGACAAATACTGCATGATTTCACTTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 72 bp | TATATTTTGAAGTCAGGATGTGGGATGCTTCCAGCTTaGTTCTTTTCCAAGATTGATTTGGCTATTCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: YILKSGCGMLPA*FFSKIDLAIRG Trigger: ACCACGAATAGCCAAATCAATCTTGGAAAAGAACAAAGCTGGAAGCATCCCACATCCTGACTTCAAAATATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 72 bp | TGCATGTGTCTTTATAGTAGCATAATTTATAGTCCTTaGGGTATATACCCAGTAATGGGATGGCAGGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: CMCLYSSIIYSP*GIYPVMGWQGQ Trigger: TTGACCCTGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATTATGCTACTATAAAGACACATGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 90 bp | GGAGTATTAAGTTTCTCTGCTCAAATAAGTGAAATCATGCAGTATTaGTCCTTCTGTGACTGGCTTGCTTTGCTTAATGTAATGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: GVLSFSAQISEIMQY*SFCDWLALLNVMSS Trigger: TGAGGACATTACATTAAGCAAAGCAAGCCAGTCACAGAAGGACAAATACTGCATGATTTCACTTATTTGAGCAGAGAAACTTAATACTCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS TCA 72 bp | GTAATGAACACAGGAGTGCTAACATCTTTGAGATCCTaGTTTCAATTGTTTTGGATATACAGTCAGAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: VMNTGVLTSLRS*FQLFWIYSQKW Trigger: CCACTTCTGACTGTATATCCAAAACAATTGAAATCAGGATCTCAAAGATGTTAGCACTCCTGTGTTCATTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 72 bp | AGTTTCTCTGCTCAAATAAGTGAAATCATGCAGTATTaGTCCTTCTGTGACTGGCTTGCTTTGCTTAATGTA | + |
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Preference number: 6 (lower is better) Translates to: SFSAQISEIMQY*SFCDWLALLNV Trigger: TACATTAAGCAAAGCAAGCCAGTCACAGAAGGACAAATACTGCATGATTTCACTTATTTGAGCAGAGAAACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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| CDS CAA 72 bp | TTAAATTGCATGTCCCTGATTTATGACATTGAGCATTaGTTTTTCACATATCTGTTGGCCATTTGCATGTCT | + |
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Preference number: 6 (lower is better) Translates to: LNCMSLIYDIEH*FFTYLLAICMS Trigger: AGACATGCAAATGGCCAACAGATATGTGAAAAACAAATGCTCAATGTCATAAATCAGGGACATGCAATTTAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670964.1 |
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