Pregenerated sensors for LINC02059 (Homo sapiens)
Ensembl gene IDs: ENSG00000250544Ensembl transcript IDs: ENST00000503843.2, ENST00000506471.1, ENST00000665185.1, ENST00000670908.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTTTTAAGTCATTATGTTTGGGGGTGGCTTGTATATGGCAATAGGTaGCTGATTACGTTGCTTTCAGGTCCTCTGAAAGTGGTCTGTTTT | + |
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Preference number: 5 (lower is better) Translates to: VLSHYVWGWLVYGNR*LITLLSGPLKVVCF Trigger: AAAACAGACCACTTTCAGAGGACCTGAAAGCAACGTAATCAGTCACCTATTGCCATATACAAGCCACCCCCAAACATAATGACTTAAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000506471.1 ENST00000670908.1 |
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| CDS CCA 90 bp | TGTCATAGATTGTCACAGTTCTTTGCAGCTTCTCCTACCTGGAGATaGAGTGTATTTCTTGACCTTCTTGAATTTGGACTTGTCTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: CHRLSQFFAASPTWR*SVFLDLLEFGLVLQ Trigger: TTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGGTAGGAGAAGCTGCAAAGAACTGTGACAATCTATGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506471.1 ENST00000670908.1 |
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| CDS CCA 90 bp | GGAGTGTTGGCCTCAGATATTTCAACTCAAAGTCATAGATTTCTCTaGAGATGGAGTGTATTTCTTGACCTTCTTGAATTTGGACTTGTC | + |
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Preference number: 5 (lower is better) Translates to: GVLASDISTQSHRFL*RWSVFLDLLEFGLV Trigger: GACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGAGAAATCTATGACTTTGAGTTGAAATATCTGAGGCCAACACTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000503843.2 ENST00000665185.1 |
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| CDS CCA 90 bp | GAATTTGGACTTGTCTTGCAACTTGCTCTGGCCAAGAGAATGCAATaGAAACCAGATTACATAGGACTGAATCTGATATTTTGGAAACTT | + |
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Preference number: 5 (lower is better) Translates to: EFGLVLQLALAKRMQ*KPDYIGLNLIFWKL Trigger: AAGTTTCCAAAATATCAGATTCAGTCCTATGTAATCTGGTTTCCATTGCATTCTCTTGGCCAGAGCAAGTTGCAAGACAAGTCCAAATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000506471.1 ENST00000665185.1 ENST00000670908.1 |
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| CDS CCA 72 bp | CCAGCCGCCGGGATGAGCTGTCCTTTCCATTCCACTTaGCTCCTCACCATAACAAGTCTTGGATATTTTGTG | + |
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Preference number: 6 (lower is better) Translates to: PAAGMSCPFHST*LLTITSLGYFV Trigger: CACAAAATATCCAAGACTTGTTATGGTGAGGAGCCAAGTGGAATGGAAAGGACAGCTCATCCCGGCGGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503843.2 ENST00000506471.1 ENST00000665185.1 |
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| CDS CAA 72 bp | CCCAGCCGCCGGGATGAGCTGTCCTTTCCATTCCACTaGGCTCCTCACCATAACAAGTCTTGGATATTTTGT | + |
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Preference number: 6 (lower is better) Translates to: PSRRDELSFPFH*APHHNKSWIFC Trigger: ACAAAATATCCAAGACTTGTTATGGTGAGGAGCCAAGTGGAATGGAAAGGACAGCTCATCCCGGCGGCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503843.2 ENST00000506471.1 ENST00000665185.1 |
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| CDS CAA 90 bp | GCATGCACTCCCAGCCGCCGGGATGAGCTGTCCTTTCCATTCCACTaGGCTCCTCACCATAACAAGTCTTGGATATTTTGTGTCATAGTA | + |
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Preference number: 6 (lower is better) Translates to: ACTPSRRDELSFPFH*APHHNKSWIFCVIV Trigger: TACTATGACACAAAATATCCAAGACTTGTTATGGTGAGGAGCCAAGTGGAATGGAAAGGACAGCTCATCCCGGCGGCTGGGAGTGCATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000503843.2 ENST00000506471.1 |
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| CDS TCA 72 bp | ATATCTCAGCTGGAATGCCTACAGTCAGCCCCTAGGTaGTTGTCAGCTATCTGCAGACCAAGAATGAACACA | + |
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Preference number: 6 (lower is better) Translates to: ISQLECLQSAPR*LSAICRPRMNT Trigger: TGTGTTCATTCTTGGTCTGCAGATAGCTGACAATCACCTAGGGGCTGACTGTAGGCATTCCAGCTGAGATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000506471.1 ENST00000670908.1 |
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| CDS CAA 90 bp | TTGCAGCTTCTCCTACCTGGAGATGGAGTGTATTTCTTGACCTTCTaGAATTTGGACTTGTCTTGCAACTTGCTCTGGCCAAGAGAATGC | + |
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Preference number: 6 (lower is better) Translates to: LQLLLPGDGVYFLTF*NLDLSCNLLWPREC Trigger: GCATTCTCTTGGCCAGAGCAAGTTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGGTAGGAGAAGCTGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506471.1 ENST00000670908.1 |
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| CDS CAA 90 bp | CTTCTCCTACCTGGAGATGGAGTGTATTTCTTGACCTTCTTGAATTaGGACTTGTCTTGCAACTTGCTCTGGCCAAGAGAATGCAATGGA | + |
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Preference number: 6 (lower is better) Translates to: LLLPGDGVYFLTFLN*DLSCNLLWPRECNG Trigger: TCCATTGCATTCTCTTGGCCAGAGCAAGTTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGGTAGGAGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506471.1 ENST00000670908.1 |
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| CDS TCA 72 bp | CATTATGTTTGGGGGTGGCTTGTATATGGCAATAGGTaGCTGATTACGTTGCTTTCAGGTCCTCTGAAAGTG | + |
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Preference number: 6 (lower is better) Translates to: HYVWGWLVYGNR*LITLLSGPLKV Trigger: CACTTTCAGAGGACCTGAAAGCAACGTAATCAGTCACCTATTGCCATATACAAGCCACCCCCAAACATAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000506471.1 ENST00000670908.1 |
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| CDS CAA 72 bp | ATATTTTGGAAACTTTTCACATTTATGCTGACTCTCTaGGATGCCTGTAACCACCCTGTGAGCAAGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: IFWKLFTFMLTL*DACNHPVSKPP Trigger: AGGAGGCTTGCTCACAGGGTGGTTACAGGCATCCAAGAGAGTCAGCATAAATGTGAAAAGTTTCCAAAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000506471.1 ENST00000665185.1 ENST00000670908.1 |
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| CDS CAA 72 bp | TTGCAGCTTCTCCTACCTGGAGATGGAGTGTATTTCTaGACCTTCTTGAATTTGGACTTGTCTTGCAACTTG | + |
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Preference number: 6 (lower is better) Translates to: LQLLLPGDGVYF*TFLNLDLSCNL Trigger: CAAGTTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGGTAGGAGAAGCTGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506471.1 ENST00000670908.1 |
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| CDS CAA 72 bp | GATTTCTCTGGAGATGGAGTGTATTTCTTGACCTTCTaGAATTTGGACTTGTCTTGCAACTTGCTCTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: DFSGDGVYFLTF*NLDLSCNLLWP Trigger: TGGCCAGAGCAAGTTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGAGAAATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665185.1 |
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| CDS CAA 90 bp | TTTCAACTCAAAGTCATAGATTTCTCTGGAGATGGAGTGTATTTCTaGACCTTCTTGAATTTGGACTTGTCTTGCAACTTGCTCTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: FQLKVIDFSGDGVYF*TFLNLDLSCNLLWP Trigger: TGGCCAGAGCAAGTTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGAGAAATCTATGACTTTGAGTTGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665185.1 |
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| CDS CAA 90 bp | TGTCTGGTAATTTCTGTCACCACTTGTTTAAAATTGCTTGGAGTGTaGGCCTCAGATATTTCAACTCAAAGTCATAGATTTCTCTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: CLVISVTTCLKLLGV*ASDISTQSHRFLWR Trigger: TCTCCAGAGAAATCTATGACTTTGAGTTGAAATATCTGAGGCCAACACTCCAAGCAATTTTAAACAAGTGGTGACAGAAATTACCAGACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000503843.2 ENST00000665185.1 |
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| CDS CAA 90 bp | AGTCTTGATGTGTGTCTGGTAATTTCTGTCACCACTTGTTTAAAATaGCTTGGAGTGTTGGCCTCAGATATTTCAACTCAAAGTCATAGA | + |
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Preference number: 6 (lower is better) Translates to: SLDVCLVISVTTCLK*LGVLASDISTQSHR Trigger: TCTATGACTTTGAGTTGAAATATCTGAGGCCAACACTCCAAGCAATTTTAAACAAGTGGTGACAGAAATTACCAGACACACATCAAGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000503843.2 ENST00000506471.1 ENST00000665185.1 ENST00000670908.1 |
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| CDS CAA 72 bp | GATTTCTCTGGAGATGGAGTGTATTTCTTGACCTTCTaGAATTTGGACTTGTCTTGCAACTTGCTTCATTAT | + |
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Preference number: 6 (lower is better) Translates to: DFSGDGVYFLTF*NLDLSCNLLHY Trigger: ATAATGAAGCAAGTTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGAGAAATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503843.2 |
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| CDS CAA 72 bp | AAAGTCATAGATTTCTCTGGAGATGGAGTGTATTTCTaGACCTTCTTGAATTTGGACTTGTCTTGCAACTTG | + |
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Preference number: 6 (lower is better) Translates to: KVIDFSGDGVYF*TFLNLDLSCNL Trigger: CAAGTTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGAGAAATCTATGACTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000503843.2 ENST00000665185.1 |
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| CDS CCA 72 bp | GCCTCAGATATTTCAACTCAAAGTCATAGATTTCTCTaGAGATGGAGTGTATTTCTTGACCTTCTTGAATTT | + |
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Preference number: 6 (lower is better) Translates to: ASDISTQSHRFL*RWSVFLDLLEF Trigger: AAATTCAAGAAGGTCAAGAAATACACTCCATCTCCAGAGAAATCTATGACTTTGAGTTGAAATATCTGAGGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000503843.2 ENST00000665185.1 |
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| CDS CAA 72 bp | AGTGTATTTCTTGACCTTCTTGAATTTGGACTTGTCTaGCAACTTGCTTCATTATGTACGCCTTCTATAGAT | + |
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Preference number: 6 (lower is better) Translates to: SVFLDLLEFGLV*QLASLCTPSID Trigger: ATCTATAGAAGGCGTACATAATGAAGCAAGTTGCAAGACAAGTCCAAATTCAAGAAGGTCAAGAAATACACT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503843.2 |
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| CDS CAA 72 bp | ATTTCTGTCACCACTTGTTTAAAATTGCTTGGAGTGTaGGCCTCAGATATTTCAACTCAAAGTCATAGATTT | + |
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Preference number: 6 (lower is better) Translates to: ISVTTCLKLLGV*ASDISTQSHRF Trigger: AAATCTATGACTTTGAGTTGAAATATCTGAGGCCAACACTCCAAGCAATTTTAAACAAGTGGTGACAGAAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000503843.2 ENST00000506471.1 ENST00000665185.1 ENST00000670908.1 |
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