Pregenerated sensors for LINC02057 (Homo sapiens)
Ensembl gene IDs: ENSG00000249279Ensembl transcript IDs: ENST00000503882.1, ENST00000511794.6, ENST00000659829.1, ENST00000661728.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCACTGCTGCCTGGAGTTCCTTGTCTGAGATAGGCAGGGCGTGGTaGCCCAGGTCATCTCCCAGGCATGCTTGCCCCACGAGCAGCGCT | + |
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Preference number: 5 (lower is better) Translates to: ATAAWSSLSEIGRAW*PRSSPRHACPTSSA Trigger: AGCGCTGCTCGTGGGGCAAGCATGCCTGGGAGATGACCTGGGGCACCACGCCCTGCCTATCTCAGACAAGGAACTCCAGGCAGCAGTGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS TCA 90 bp | GCCGCCGTGGTGGCCGCGGGTTGTGCAGAGACACTTACCTCCCTGTaGACAGGGCTGTCTGTGTATGGTCTGTCAGACTGGCTGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: AAVVAAGCAETLTSL*TGLSVYGLSDWLGS Trigger: GCTGCCCAGCCAGTCTGACAGACCATACACAGACAGCCCTGTTCACAGGGAGGTAAGTGTCTCTGCACAACCCGCGGCCACCACGGCGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659829.1 |
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| CDS TCA 90 bp | GGACCCAGCAGAACCTCGGCGTCCCACGGCCCTAATAGGCAAATATaGGCCGGCCTCCGCCCCTTAAGGATGGAGCTGCTTAGCTTCGCC | + |
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Preference number: 5 (lower is better) Translates to: GPSRTSASHGPNRQI*AGLRPLRMELLSFA Trigger: GGCGAAGCTAAGCAGCTCCATCCTTAAGGGGCGGAGGCCGGCTCATATTTGCCTATTAGGGCCGTGGGACGCCGAGGTTCTGCTGGGTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS CCA 90 bp | CTCCGCCCCTTAAGGATGGAGCTGCTTAGCTTCGCCACTGCTGCCTaGAGTTCCTTGTCTGAGATAGGCAGGGCGTGGTGCCCCAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: LRPLRMELLSFATAA*SSLSEIGRAWCPRS Trigger: TGACCTGGGGCACCACGCCCTGCCTATCTCAGACAAGGAACTCCAGGCAGCAGTGGCGAAGCTAAGCAGCTCCATCCTTAAGGGGCGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS CCA 90 bp | CCTCCCTGTGAACAGGGCTGTCTGTGTATGGTCTGTCAGACTGGCTaGGCAGCTGTCTTCCTTTCTTCAATGACTGCTGCCACCGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: PPCEQGCLCMVCQTG*AAVFLSSMTAATEA Trigger: GGCCTCGGTGGCAGCAGTCATTGAAGAAAGGAAGACAGCTGCCCAGCCAGTCTGACAGACCATACACAGACAGCCCTGTTCACAGGGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000503882.1 ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS TCA 90 bp | GTATGGTCTGTCAGACTGGCTGGGCAGCTGTCTTCCTTTCTTCAATaGCTGCTGCCACCGAGGCCACCTCCGGCAAATCACTTGAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: VWSVRLAGQLSSFLQ*LLPPRPPPANHLRS Trigger: TGACCTCAAGTGATTTGCCGGAGGTGGCCTCGGTGGCAGCAGTCATTGAAGAAAGGAAGACAGCTGCCCAGCCAGTCTGACAGACCATAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000503882.1 ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS GCA 90 bp | GCAGGAGGATCGTGGAGCTTGGAGCTAAATAAAGCCCAGGTGCTTTaGCCTCTGCTGCTGACTTCGGGTGCTGGCTGGGAAGGATCTATT | + |
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Preference number: 5 (lower is better) Translates to: AGGSWSLELNKAQVL*PLLLTSGAGWEGSI Trigger: AATAGATCCTTCCCAGCCAGCACCCGAAGTCAGCAGCAGAGGGCAAAGCACCTGGGCTTTATTTAGCTCCAAGCTCCACGATCCTCCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511794.6 |
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| CDS GCA 90 bp | CCAGGAGGATCGTGGAGCTTGGAGCTAAATAAAGCCCAGGTGCTTTaGCCTCTGCTGCTGACTTCGGGTGCTGGCTGGGAAGGATCTATT | + |
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Preference number: 5 (lower is better) Translates to: PGGSWSLELNKAQVL*PLLLTSGAGWEGSI Trigger: AATAGATCCTTCCCAGCCAGCACCCGAAGTCAGCAGCAGAGGGCAAAGCACCTGGGCTTTATTTAGCTCCAAGCTCCACGATCCTCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659829.1 ENST00000661728.1 |
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| CDS TCA 90 bp | TTGCTTTTGATGTTTCGTCATGAAATCTTTGCCCACGCCTCCCTGTaGACAGGGCTGTCTGTGTATGGTCTGTCAGACTGGCTGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLLMFRHEIFAHASL*TGLSVYGLSDWLGS Trigger: GCTGCCCAGCCAGTCTGACAGACCATACACAGACAGCCCTGTTCACAGGGAGGCGTGGGCAAAGATTTCATGACGAAACATCAAAAGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503882.1 |
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| CDS GCA 90 bp | TGCCTTGGTTTCTTAAAGCCCCGGCATCTTGAAGCCCTAGGCTTTTaGCTCTTCCAGGAACAATATGCAGGAGGATCGTGGAGCTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: CLGFLKPRHLEALGF*LFQEQYAGGSWSLE Trigger: CTCCAAGCTCCACGATCCTCCTGCATATTGTTCCTGGAAGAGGCAAAAGCCTAGGGCTTCAAGATGCCGGGGCTTTAAGAAACCAAGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511794.6 |
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| CDS TCA 90 bp | AAATCACTTGAGGTCATGCCTTGGTTTCTTAAAGCCCCGGCATCTTaGAGCCCTAGGCTTTTGCCTCTTCCAGGAACAATATGCAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: KSLEVMPWFLKAPAS*SPRLLPLPGTICRR Trigger: CCTCCTGCATATTGTTCCTGGAAGAGGCAAAAGCCTAGGGCTTCAAGATGCCGGGGCTTTAAGAAACCAAGGCATGACCTCAAGTGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511794.6 |
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| CDS TCA 90 bp | AAATCACTTGAGGTCATGCCTTGGTTTCTTAAAGCCCCGGCATCTTaGAGCCCTAGGCTTTTGCCTCTTCCAGGAACAATATGCTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: KSLEVMPWFLKAPAS*SPRLLPLPGTICCS Trigger: GGAACAGCATATTGTTCCTGGAAGAGGCAAAAGCCTAGGGCTTCAAGATGCCGGGGCTTTAAGAAACCAAGGCATGACCTCAAGTGATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000503882.1 ENST00000659829.1 ENST00000661728.1 |
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| CDS CCA 72 bp | CTGGGAATGTGGGAGCCTTTCCTGAAGCCGCCGTGGTaGCCGCGGGTTGTGCAGAGACACTTACCTCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: LGMWEPFLKPPW*PRVVQRHLPPC Trigger: ACAGGGAGGTAAGTGTCTCTGCACAACCCGCGGCCACCACGGCGGCTTCAGGAAAGGCTCCCACATTCCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659829.1 |
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| CDS GCA 72 bp | AGCCCAGGTGCTTTGCCCTCTGCTGCTGACTTCGGGTaGTGGCTGGGAAGGATCTATTTCCAGGAGGGACCC | + |
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Preference number: 6 (lower is better) Translates to: SPGALPSAADFG*WLGRIYFQEGP Trigger: GGGTCCCTCCTGGAAATAGATCCTTCCCAGCCAGCACCCGAAGTCAGCAGCAGAGGGCAAAGCACCTGGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS TCA 72 bp | AGAACCTCGGCGTCCCACGGCCCTAATAGGCAAATATaGGCCGGCCTCCGCCCCTTAAGGATGGAGCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: RTSASHGPNRQI*AGLRPLRMELL Trigger: AAGCAGCTCCATCCTTAAGGGGCGGAGGCCGGCTCATATTTGCCTATTAGGGCCGTGGGACGCCGAGGTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS CCA 72 bp | TTAAGGATGGAGCTGCTTAGCTTCGCCACTGCTGCCTaGAGTTCCTTGTCTGAGATAGGCAGGGCGTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: LRMELLSFATAA*SSLSEIGRAWC Trigger: GCACCACGCCCTGCCTATCTCAGACAAGGAACTCCAGGCAGCAGTGGCGAAGCTAAGCAGCTCCATCCTTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS CCA 72 bp | GAACAGGGCTGTCTGTGTATGGTCTGTCAGACTGGCTaGGCAGCTGTCTTCCTTTCTTCAATGACTGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: EQGCLCMVCQTG*AAVFLSSMTAA Trigger: GGCAGCAGTCATTGAAGAAAGGAAGACAGCTGCCCAGCCAGTCTGACAGACCATACACAGACAGCCCTGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000503882.1 ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS CCA 72 bp | GACACTTACCTCCCTGTGAACAGGGCTGTCTGTGTATaGTCTGTCAGACTGGCTGGGCAGCTGTCTTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: DTYLPVNRAVCV*SVRLAGQLSSF Trigger: AAAGGAAGACAGCTGCCCAGCCAGTCTGACAGACCATACACAGACAGCCCTGTTCACAGGGAGGTAAGTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659829.1 |
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| CDS CAA 72 bp | CTCTTCCAGGAACAATATGCAGGAGGATCGTGGAGCTaGGAGCTAAATAAAGCCCAGGTGCTTTGCCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: LFQEQYAGGSWS*ELNKAQVLCPL Trigger: CAGAGGGCAAAGCACCTGGGCTTTATTTAGCTCCAAGCTCCACGATCCTCCTGCATATTGTTCCTGGAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511794.6 |
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| CDS CAA 72 bp | GACAAAGATATCTCAGTCCCAGGAGGATCGTGGAGCTaGGAGCTAAATAAAGCCCAGGTGCTTTGCCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: DKDISVPGGSWS*ELNKAQVLCPL Trigger: CAGAGGGCAAAGCACCTGGGCTTTATTTAGCTCCAAGCTCCACGATCCTCCTGGGACTGAGATATCTTTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659829.1 ENST00000661728.1 |
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| CDS TCA 72 bp | GAGGTCATGCCTTGGTTTCTTAAAGCCCCGGCATCTTaGAGCCCTAGGCTTTTGCCTCTTCCAGGAACAATA | + |
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Preference number: 6 (lower is better) Translates to: EVMPWFLKAPAS*SPRLLPLPGTI Trigger: TATTGTTCCTGGAAGAGGCAAAAGCCTAGGGCTTCAAGATGCCGGGGCTTTAAGAAACCAAGGCATGACCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000503882.1 ENST00000511794.6 ENST00000659829.1 ENST00000661728.1 |
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| CDS CAA 90 bp | TTTGTCAGATGGATAGATTGCAAAAGTGTTCTCCCGTTCTATAGGTaGTGTCTGTTCACTCTGATGATGGTTTCTTTTGCTGTGCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: FVRWIDCKSVLPFYR*CLFTLMMVSFAVQK Trigger: CTTCTGCACAGCAAAAGAAACCATCATCAGAGTGAACAGACACAACCTATAGAACGGGAGAACACTTTTGCAATCTATCCATCTGACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503882.1 |
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| CDS CAA 72 bp | TGGATAGATTGCAAAAGTGTTCTCCCGTTCTATAGGTaGTGTCTGTTCACTCTGATGATGGTTTCTTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: WIDCKSVLPFYR*CLFTLMMVSFA Trigger: AGCAAAAGAAACCATCATCAGAGTGAACAGACACAACCTATAGAACGGGAGAACACTTTTGCAATCTATCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503882.1 |
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