Pregenerated sensors for LINC02048 (Homo sapiens)
Ensembl gene IDs: ENSG00000228271Ensembl transcript IDs: ENST00000440556.1, ENST00000653696.1
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTTCCACAGCTGTCCCTGGCCCAGCCTGCGGCGCTGACTGATGAATaGGAGGCCAGCCAGGAAGGGGCTTCCTCCTGCCAGATGCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: VPQLSLAQPAALTDE*EASQEGASSCQMLH Trigger: ATGGAGCATCTGGCAGGAGGAAGCCCCTTCCTGGCTGGCCTCCCATTCATCAGTCAGCGCCGCAGGCTGGGCCAGGGACAGCTGTGGAAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 90 bp | CAGAACCAAGCTGCAGGGAGGAGGGGACGGCCGCACAAAAGGGTCTaGGGAGTGACCCGGCCTGCCTCAGCTACCTGCTGTTTGCCACAA | + |
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Preference number: 5 (lower is better) Translates to: QNQAAGRRGRPHKRV*GVTRPASATCCLPQ Trigger: TTGTGGCAAACAGCAGGTAGCTGAGGCAGGCCGGGTCACTCCCCAGACCCTTTTGTGCGGCCGTCCCCTCCTCCCTGCAGCTTGGTTCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CCA 90 bp | GAAGAGCTGTTGCCAACCCAGCCGGGGCCTGAGGTCAAGGCCTCATaGGGGGCCGGCTGCCTGTTCACCCTTCCAGACCTCATTTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: EELLPTQPGPEVKAS*GAGCLFTLPDLISP Trigger: AGGAGAAATGAGGTCTGGAAGGGTGAACAGGCAGCCGGCCCCCCATGAGGCCTTGACCTCAGGCCCCGGCTGGGTTGGCAACAGCTCTTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS GCA 90 bp | GGGGGCCGGCTGCCTGTTCACCCTTCCAGACCTCATTTCTCCTACTaGATGTTAGACCAGGGTGCTGGAGTCAGGGTGCCAGAGGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: GGRLPVHPSRPHFSY*MLDQGAGVRVPEGL Trigger: GAGGCCCTCTGGCACCCTGACTCCAGCACCCTGGTCTAACATGCAGTAGGAGAAATGAGGTCTGGAAGGGTGAACAGGCAGCCGGCCCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS GCA 90 bp | CCTCAGCTACCTGCTGTTTGCCACAATGGGACCCGAGTCCCGGGCTaGCTCTGGAGGCAGGAGAAAAGGGCCGAGATAATGACGGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: PQLPAVCHNGTRVPG*LWRQEKRAEIMTGS Trigger: TGAGCCCGTCATTATCTCGGCCCTTTTCTCCTGCCTCCAGAGGCAGCCCGGGACTCGGGTCCCATTGTGGCAAACAGCAGGTAGCTGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CCA 90 bp | ACAGGAGGGCAGATGGCAGGCTGGGCACGTGTTTCTTCCCTGGCCTaGTGTGGTCACACCGTTCACCCAGTGACTTCATGGCTCTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: TGGQMAGWARVSSLA*CGHTVHPVTSWLSA Trigger: GGCTGAGAGCCATGAAGTCACTGGGTGAACGGTGTGACCACACCAGGCCAGGGAAGAAACACGTGCCCAGCCTGCCATCTGCCCTCCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CCA 90 bp | AACAAATGCAGCTTCCTGGCCCAGCCTGCGGCGCTGACTGATGAATaGGAGGCCAGCCAGGAAGGGGCTTCCTCCTGCCAGATGCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: NKCSFLAQPAALTDE*EASQEGASSCQMLH Trigger: ATGGAGCATCTGGCAGGAGGAAGCCCCTTCCTGGCTGGCCTCCCATTCATCAGTCAGCGCCGCAGGCTGGGCCAGGAAGCTGCATTTGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CCA 90 bp | CTACCTGCTGTTTGCCACAATGGGACCCGAGTCCCGGGCTGCCTCTaGAGGCAGGAGAAAAGGGCCGAGATAATGACGGGCTCAGCTACC | + |
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Preference number: 5 (lower is better) Translates to: LPAVCHNGTRVPGCL*RQEKRAEIMTGSAT Trigger: GGTAGCTGAGCCCGTCATTATCTCGGCCCTTTTCTCCTGCCTCCAGAGGCAGCCCGGGACTCGGGTCCCATTGTGGCAAACAGCAGGTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CCA 90 bp | AGGGCAGATGGCAGGCTGGGCACGTGTTTCTTCCCTGGCCTGGTGTaGTCACACCGTTCACCTATGCCCAGTGACTTCATGGCTCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: RADGRLGTCFFPGLV*SHRSPMPSDFMALS Trigger: GCTGAGAGCCATGAAGTCACTGGGCATAGGTGAACGGTGTGACCACACCAGGCCAGGGAAGAAACACGTGCCCAGCCTGCCATCTGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 90 bp | ACAGGAGGGCAGATGGCAGGCTGGGCACGTGTTTCTTCCCTGGCCTaGTGTGGTCACACCGTTCACCTATGCCCAGTGACTTCATGGCTC | + |
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Preference number: 5 (lower is better) Translates to: TGGQMAGWARVSSLA*CGHTVHLCPVTSWL Trigger: GAGCCATGAAGTCACTGGGCATAGGTGAACGGTGTGACCACACCAGGCCAGGGAAGAAACACGTGCCCAGCCTGCCATCTGCCCTCCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 90 bp | GGCAGGAGAGGCCCCTTCTCTTGCTTTCTCTGCCTGCCTCCGAGCTaGCTCACCGACCGGGTGACTTCTGTCCCCTTTCCTTGTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: GRRGPFSCFLCLPPS*LTDRVTSVPFPCFL Trigger: CAAGAAACAAGGAAAGGGGACAGAAGTCACCCGGTCGGTGAGCCAGCTCGGAGGCAGGCAGAGAAAGCAAGAGAAGGGGCCTCTCCTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS GCA 90 bp | GAGGCAGGAGAAAAGGGCCGAGATAATGACGGGCTCAGCTACCGCTaGTCTCTTCAGAGAAAGGAGAAGAGGGAGGAGGCAAAACCTCCC | + |
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Preference number: 5 (lower is better) Translates to: EAGEKGRDNDGLSYR*SLQRKEKREEAKPP Trigger: GGGAGGTTTTGCCTCCTCCCTCTTCTCCTTTCTCTGAAGAGAGCAGCGGTAGCTGAGCCCGTCATTATCTCGGCCCTTTTCTCCTGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS GCA 90 bp | GCTGGGTGTATGTTTCTGAGGCTTAACCAGAATCTGTCCCGTGACTaGCCAGCTGTAAATCAGGGCCAGAGGGATGGTGGTGGGGACAGG | + |
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Preference number: 5 (lower is better) Translates to: AGCMFLRLNQNLSRD*PAVNQGQRDGGGDR Trigger: CCTGTCCCCACCACCATCCCTCTGGCCCTGATTTACAGCTGGGCAGTCACGGGACAGATTCTGGTTAAGCCTCAGAAACATACACCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS TCA 90 bp | AGGAAAGAAGTGAGTAACAGAGGTTTGTTTCCAAGGGAGCCTGTCTaGGCCAAGAAGAGCTGTTGCCAACCCAGCCGGGGCCTGAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: RKEVSNRGLFPREPV*AKKSCCQPSRGLRS Trigger: TGACCTCAGGCCCCGGCTGGGTTGGCAACAGCTCTTCTTGGCTCAGACAGGCTCCCTTGGAAACAAACCTCTGTTACTCACTTCTTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS GCA 90 bp | TCATCTCCAGCTTTATTAAGGAACCCGGGCAGGAGGAGAATGGAGTaGCGGGACCATCGTTATCCCAAAGTCTGTGAGGTGGGTGGATTT | + |
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Preference number: 5 (lower is better) Translates to: SSPALLRNPGRRRME*RDHRYPKVCEVGGF Trigger: AAATCCACCCACCTCACAGACTTTGGGATAACGATGGTCCCGGCACTCCATTCTCCTCCTGCCCGGGTTCCTTAATAAAGCTGGAGATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS TCA 90 bp | TTGTGCTCTGTGTTCACCGTTGGAATGTCTCTCCGGAGGCCTCAGTaGAAGAAATCTCAAATCCTGGCCAACAAATGCAGCTTCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: LCSVFTVGMSLRRPQ*KKSQILANKCSFLA Trigger: GGCCAGGAAGCTGCATTTGTTGGCCAGGATTTGAGATTTCTTTCACTGAGGCCTCCGGAGAGACATTCCAACGGTGAACACAGAGCACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CCA 72 bp | TTGCCAACCCAGCCGGGGCCTGAGGTCAAGGCCTCATaGGGGGCCGGCTGCCTGTTCACCCTTCCAGACCTC | + |
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Preference number: 6 (lower is better) Translates to: LPTQPGPEVKAS*GAGCLFTLPDL Trigger: GAGGTCTGGAAGGGTGAACAGGCAGCCGGCCCCCCATGAGGCCTTGACCTCAGGCCCCGGCTGGGTTGGCAA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CAA 72 bp | TGGGGAGTGACCCGGCCTGCCTCAGCTACCTGCTGTTaGCCACAATGGGACCCGAGTCCCGGGCTGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: WGVTRPASATCC*PQWDPSPGLPL Trigger: CAGAGGCAGCCCGGGACTCGGGTCCCATTGTGGCAAACAGCAGGTAGCTGAGGCAGGCCGGGTCACTCCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS GCA 72 bp | AGAGGGCCTCGGGGCCTGGCTTCTCCAGGCTGGATCTaGTTCTCTTCCTCCTCCACGGAAGAGTCTCGAGGG | + |
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Preference number: 6 (lower is better) Translates to: RGPRGLASPGWI*FSSSSTEESRG Trigger: CCCTCGAGACTCTTCCGTGGAGGAGGAAGAGAAGCAGATCCAGCCTGGAGAAGCCAGGCCCCGAGGCCCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 72 bp | GTTTGCCACAATGGGACCCGAGTCCCGGGCTGCCTCTaGAGGCAGGAGAAAAGGGCCGAGATAATGACGGGC | + |
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Preference number: 6 (lower is better) Translates to: VCHNGTRVPGCL*RQEKRAEIMTG Trigger: GCCCGTCATTATCTCGGCCCTTTTCTCCTGCCTCCAGAGGCAGCCCGGGACTCGGGTCCCATTGTGGCAAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CCA 72 bp | GAGGGCAGATGGCAGGCTGGGCACGTGTTTCTTCCCTaGCCTGGTGTGGTCACACCGTTCACCTATGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: EGRWQAGHVFLP*PGVVTPFTYAQ Trigger: CTGGGCATAGGTGAACGGTGTGACCACACCAGGCCAGGGAAGAAACACGTGCCCAGCCTGCCATCTGCCCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 72 bp | GGCCCCTTCTCTTGCTTTCTCTGCCTGCCTCCGAGCTaGCTCACCGACCGGGTGACTTCTGTCCCCTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: GPFSCFLCLPPS*LTDRVTSVPFP Trigger: AGGAAAGGGGACAGAAGTCACCCGGTCGGTGAGCCAGCTCGGAGGCAGGCAGAGAAAGCAAGAGAAGGGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS GCA 72 bp | CAGACCTCATTTCTCCTACTGCATGTTAGACCAGGGTaGTGGAGTCAGGGTGCCAGAGGGCCTCGGGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: QTSFLLLHVRPG*WSQGARGPRGL Trigger: CAGGCCCCGAGGCCCTCTGGCACCCTGACTCCAGCACCCTGGTCTAACATGCAGTAGGAGAAATGAGGTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 72 bp | GGCAGGCTGGGCACGTGTTTCTTCCCTGGCCTGGTGTaGTCACACCGTTCACCCAGTGACTTCATGGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: GRLGTCFFPGLV*SHRSPSDFMAL Trigger: GAGAGCCATGAAGTCACTGGGTGAACGGTGTGACCACACCAGGCCAGGGAAGAAACACGTGCCCAGCCTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CAA 72 bp | GTTTCCAAGGGAGCCTGTCTGAGCCAAGAAGAGCTGTaGCCAACCCAGCCGGGGCCTGAGGTCAAGGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: VSKGACLSQEEL*PTQPGPEVKAS Trigger: TGAGGCCTTGACCTCAGGCCCCGGCTGGGTTGGCAACAGCTCTTCTTGGCTCAGACAGGCTCCCTTGGAAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CAA 90 bp | GCCTCCGAGCTGGCTCACCGACCGGGTGACTTCTGTCCCCTTTCCTaGTTTCTTGCCTTTCACAGCTGCCTCCCAGCTCAGGTTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: ASELAHRPGDFCPLS*FLAFHSCLPAQVPQ Trigger: CTGTGGAACCTGAGCTGGGAGGCAGCTGTGAAAGGCAAGAAACAAGGAAAGGGGACAGAAGTCACCCGGTCGGTGAGCCAGCTCGGAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 72 bp | CAGATGGCAGGCTGGGCACGTGTTTCTTCCCTGGCCTaGTGTGGTCACACCGTTCACCCAGTGACTTCATGG | + |
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Preference number: 6 (lower is better) Translates to: QMAGWARVSSLA*CGHTVHPVTSW Trigger: CCATGAAGTCACTGGGTGAACGGTGTGACCACACCAGGCCAGGGAAGAAACACGTGCCCAGCCTGCCATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CCA 72 bp | GGCAGGCTGGGCACGTGTTTCTTCCCTGGCCTGGTGTaGTCACACCGTTCACCTATGCCCAGTGACTTCATG | + |
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Preference number: 6 (lower is better) Translates to: GRLGTCFFPGLV*SHRSPMPSDFM Trigger: CATGAAGTCACTGGGCATAGGTGAACGGTGTGACCACACCAGGCCAGGGAAGAAACACGTGCCCAGCCTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 72 bp | CAGATGGCAGGCTGGGCACGTGTTTCTTCCCTGGCCTaGTGTGGTCACACCGTTCACCTATGCCCAGTGACT | + |
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Preference number: 6 (lower is better) Translates to: QMAGWARVSSLA*CGHTVHLCPVT Trigger: AGTCACTGGGCATAGGTGAACGGTGTGACCACACCAGGCCAGGGAAGAAACACGTGCCCAGCCTGCCATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS TCA 72 bp | GTGAGTAACAGAGGTTTGTTTCCAAGGGAGCCTGTCTaGGCCAAGAAGAGCTGTTGCCAACCCAGCCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: VSNRGLFPREPV*AKKSCCQPSRG Trigger: GCCCCGGCTGGGTTGGCAACAGCTCTTCTTGGCTCAGACAGGCTCCCTTGGAAACAAACCTCTGTTACTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS GCA 72 bp | CTGCCTGTTCACCCTTCCAGACCTCATTTCTCCTACTaGATGTTAGACCAGGGTGCTGGAGTCAGGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: LPVHPSRPHFSY*MLDQGAGVRVP Trigger: TGGCACCCTGACTCCAGCACCCTGGTCTAACATGCAGTAGGAGAAATGAGGTCTGGAAGGGTGAACAGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CCA 72 bp | TCATCGGAGCAGAGGCAAAAAGGCTACATTTTTCTATaGGGCATCGAGGGCTCGAGGAGGCCACCGTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: SSEQRQKGYIFL*GIEGSRRPPFP Trigger: GGGAAACGGTGGCCTCCTCGAGCCCTCGATGCCCCATAGAAAAATGTAGCCTTTTTGCCTCTGCTCCGATGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS GCA 72 bp | ATGTTTCTGAGGCTTAACCAGAATCTGTCCCGTGACTaGCCAGCTGTAAATCAGGGCCAGAGGGATGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: MFLRLNQNLSRD*PAVNQGQRDGG Trigger: ACCACCATCCCTCTGGCCCTGATTTACAGCTGGGCAGTCACGGGACAGATTCTGGTTAAGCCTCAGAAACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653696.1 |
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| CDS CAA 72 bp | GGAATCAGAGAAAACACTGTTGAACAAGGGTCTCTTTaGACGGGGGCCTTTAGGAAGGACGCAGCTCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: GIRENTVEQGSL*TGAFRKDAAPG Trigger: TCCTGGAGCTGCGTCCTTCCTAAAGGCCCCCGTCAAAAGAGACCCTTGTTCAACAGTGTTTTCTCTGATTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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| CDS CAA 72 bp | AGGGAGACGGGAGTCTCCAGGCTGCTTTCCAAGAAATaGCTTCTAAAATCATTTGCCTCCAGCCCCAGACAA | + |
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Preference number: 6 (lower is better) Translates to: RETGVSRLLSKK*LLKSFASSPRQ Trigger: TTGTCTGGGGCTGGAGGCAAATGATTTTAGAAGCAATTTCTTGGAAAGCAGCCTGGAGACTCCCGTCTCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000440556.1 |
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