Pregenerated sensors for LINC02042 (Homo sapiens)
Ensembl gene IDs: ENSG00000240893Ensembl transcript IDs: ENST00000481624.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTCAGTTCTTGGGTGGGTGCCACAAGATCAGATGAGCCGGTTTATTaGTTTGGGTGGTGCCAGCTGATCCATCAAGTGCAGGGTCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: VSSWVGATRSDEPVY*FGWCQLIHQVQGLA Trigger: TGCCAGACCCTGCACTTGATGGATCAGCTGGCACCACCCAAATCAATAAACCGGCTCATCTGATCTTGTGGCACCCACCCAAGAACTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CCA 90 bp | CACAGGGAGTCGAAGCTGTCTCCTTGTGCTGAGTCAGTTCTTGGGTaGGTGCCACAAGATCAGATGAGCCGGTTTATTGATTTGGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: HRESKLSPCAESVLG*VPQDQMSRFIDLGG Trigger: ACCACCCAAATCAATAAACCGGCTCATCTGATCTTGTGGCACCCACCCAAGAACTGACTCAGCACAAGGAGACAGCTTCGACTCCCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS TCA 90 bp | CTCCTTGTGCTGAGTCAGTTCTTGGGTGGGTGCCACAAGATCAGATaGGCCGGTTTATTGATTTGGGTGGTGCCAGCTGATCCATCAAGT | + |
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Preference number: 5 (lower is better) Translates to: LLVLSQFLGGCHKIR*AGLLIWVVPADPSS Trigger: ACTTGATGGATCAGCTGGCACCACCCAAATCAATAAACCGGCTCATCTGATCTTGTGGCACCCACCCAAGAACTGACTCAGCACAAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS TCA 90 bp | CCACAAGATCAGATGAGCCGGTTTATTGATTTGGGTGGTGCCAGCTaGTCCATCAAGTGCAGGGTCTGGCAGGTTGGATGCTTGATGAAA | + |
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Preference number: 5 (lower is better) Translates to: PQDQMSRFIDLGGAS*SIKCRVWQVGCLMK Trigger: TTTCATCAAGCATCCAACCTGCCAGACCCTGCACTTGATGGATCAGCTGGCACCACCCAAATCAATAAACCGGCTCATCTGATCTTGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CCA 90 bp | TGTGTCCTGACTTTCCTGGTCGCATTCTCTCATCTACATAGCAGATaGACTCCCCTCTGGGCTGACAACCTTAGTATGGTTTATATGGCT | + |
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Preference number: 5 (lower is better) Translates to: CVLTFLVAFSHLHSR*TPLWADNLSMVYMA Trigger: AGCCATATAAACCATACTAAGGTTGTCAGCCCAGAGGGGAGTCCATCTGCTATGTAGATGAGAGAATGCGACCAGGAAAGTCAGGACACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CCA 90 bp | GCAGATGGACTCCCCTCTGGGCTGACAACCTTAGTATGGTTTATATaGCTTGAATTAGTAAATGCTACTCCAAGGTATTGCCATTCCATT | + |
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Preference number: 5 (lower is better) Translates to: ADGLPSGLTTLVWFI*LELVNATPRYCHSI Trigger: AATGGAATGGCAATACCTTGGAGTAGCATTTACTAATTCAAGCCATATAAACCATACTAAGGTTGTCAGCCCAGAGGGGAGTCCATCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CCA 90 bp | ATCTACATAGCAGATGGACTCCCCTCTGGGCTGACAACCTTAGTATaGTTTATATGGCTTGAATTAGTAAATGCTACTCCAAGGTATTGC | + |
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Preference number: 5 (lower is better) Translates to: IYIADGLPSGLTTLV*FIWLELVNATPRYC Trigger: GCAATACCTTGGAGTAGCATTTACTAATTCAAGCCATATAAACCATACTAAGGTTGTCAGCCCAGAGGGGAGTCCATCTGCTATGTAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS TCA 90 bp | AAATCATTTCATTTTGATTGCCTCCCTAGGAAAGATGATAAGGAGTaGCAGAGAGGGAGCTTTGTAGGTCATAGGGTCATAATGAAATGT | + |
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Preference number: 5 (lower is better) Translates to: KSFHFDCLPRKDDKE*QRGSFVGHRVIMKC Trigger: ACATTTCATTATGACCCTATGACCTACAAAGCTCCCTCTCTGTCACTCCTTATCATCTTTCCTAGGGAGGCAATCAAAATGAAATGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS TCA 72 bp | CAGATGAGCCGGTTTATTGATTTGGGTGGTGCCAGCTaGTCCATCAAGTGCAGGGTCTGGCAGGTTGGATGC | + |
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Preference number: 6 (lower is better) Translates to: QMSRFIDLGGAS*SIKCRVWQVGC Trigger: GCATCCAACCTGCCAGACCCTGCACTTGATGGATCAGCTGGCACCACCCAAATCAATAAACCGGCTCATCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CCA 72 bp | TCGAAGCTGTCTCCTTGTGCTGAGTCAGTTCTTGGGTaGGTGCCACAAGATCAGATGAGCCGGTTTATTGAT | + |
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Preference number: 6 (lower is better) Translates to: SKLSPCAESVLG*VPQDQMSRFID Trigger: ATCAATAAACCGGCTCATCTGATCTTGTGGCACCCACCCAAGAACTGACTCAGCACAAGGAGACAGCTTCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CCA 72 bp | ACTTTCCTGGTCGCATTCTCTCATCTACATAGCAGATaGACTCCCCTCTGGGCTGACAACCTTAGTATGGTT | + |
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Preference number: 6 (lower is better) Translates to: TFLVAFSHLHSR*TPLWADNLSMV Trigger: AACCATACTAAGGTTGTCAGCCCAGAGGGGAGTCCATCTGCTATGTAGATGAGAGAATGCGACCAGGAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CAA 72 bp | GCAGAATTTCCTGTAGGGTGCTGTGGTTTTCATTGCTaGGTTGATGTTGTGAACATCCAGGGCCAGCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: AEFPVGCCGFHC*VDVVNIQGQLS Trigger: GGAAAGCTGGCCCTGGATGTTCACAACATCAACCAAGCAATGAAAACCACAGCACCCTACAGGAAATTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CAA 90 bp | GAGAGAAATGCAGAATTTCCTGTAGGGTGCTGTGGTTTTCATTGCTaGGTTGATGTTGTGAACATCCAGGGCCAGCTTTCCTCAAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ERNAEFPVGCCGFHC*VDVVNIQGQLSSSS Trigger: TGAACTTGAGGAAAGCTGGCCCTGGATGTTCACAACATCAACCAAGCAATGAAAACCACAGCACCCTACAGGAAATTCTGCATTTCTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS TCA 72 bp | GGAAGTAGTGAATTGCTTGATAGAACATCTTGCAGTTaGCGTATCTGTTGGGCAGTTGGTAACCACTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: GSSELLDRTSCS*RICWAVGNHSV Trigger: CACTGAGTGGTTACCAACTGCCCAACAGATACGTCAACTGCAAGATGTTCTATCAAGCAATTCACTACTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CCA 72 bp | CTCCCCTCTGGGCTGACAACCTTAGTATGGTTTATATaGCTTGAATTAGTAAATGCTACTCCAAGGTATTGC | + |
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Preference number: 6 (lower is better) Translates to: LPSGLTTLVWFI*LELVNATPRYC Trigger: GCAATACCTTGGAGTAGCATTTACTAATTCAAGCCATATAAACCATACTAAGGTTGTCAGCCCAGAGGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS TCA 72 bp | GGTCATAATGAAATGTTCATTTCCATATGCAGAGCCTaGAGATTGAGAAGGGAGGAAGTAGTGAATTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: GHNEMFISICRA*RLRREEVVNCL Trigger: CAAGCAATTCACTACTTCCTCCCTTCTCAATCTTCAGGCTCTGCATATGGAAATGAACATTTCATTATGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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| CDS CAA 72 bp | TTATTAAAGTGCCAAAAAGTTGAAAGAATCATGGCTTaGTGTCCTGACTTTCCTGGTCGCATTCTCTCATCT | + |
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Preference number: 6 (lower is better) Translates to: LLKCQKVERIMA*CPDFPGRILSS Trigger: AGATGAGAGAATGCGACCAGGAAAGTCAGGACACAAAGCCATGATTCTTTCAACTTTTTGGCACTTTAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000481624.1 |
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