Pregenerated sensors for LINC02040 (Homo sapiens)
Ensembl gene IDs: ENSG00000243149Ensembl transcript IDs: ENST00000481004.1, ENST00000657584.1, ENST00000667847.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCCAGCAAAGCTTGGCCAACAACTTCCCTGGCTGCCTTCTCCAGATaGCGTGGCTGTCATTCTTGTCCTCTCAGAATAACAAGCACCCTA | + |
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Preference number: 5 (lower is better) Translates to: ASKAWPTTSLAAFSR*RGCHSCPLRITSTL Trigger: TAGGGTGCTTGTTATTCTGAGAGGACAAGAATGACAGCCACGTCATCTGGAGAAGGCAGCCAGGGAAGTTGTTGGCCAAGCTTTGCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481004.1 |
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| CDS GCA 90 bp | CATGCATGTCTTATCTCAACGGCTTTTCTGATAATTCGAGCCGTGTaGCTGTTCCGAGATTGGGAGTTTCTTCTTGGGCGGTTCTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: HACLISTAFLIIRAV*LFRDWEFLLGRFWG Trigger: TCCCCAGAACCGCCCAAGAAGAAACTCCCAATCTCGGAACAGGCACACGGCTCGAATTATCAGAAAAGCCGTTGAGATAAGACATGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657584.1 |
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| CDS CCA 90 bp | TCAACGGCTTTTCTGATAATTCGAGCCGTGTGCCTGTTCCGAGATTaGGAGTTTCTTCTTGGGCGGTTCTGGGGACAGCATGATTGGTTA | + |
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Preference number: 5 (lower is better) Translates to: STAFLIIRAVCLFRD*EFLLGRFWGQHDWL Trigger: TAACCAATCATGCTGTCCCCAGAACCGCCCAAGAAGAAACTCCCAATCTCGGAACAGGCACACGGCTCGAATTATCAGAAAAGCCGTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657584.1 |
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| CDS CCA 90 bp | AATTTTTGCCTTCTGAAATCAGACGTCTTGGGGGAGAGAATGTGGTaGTCATCTGTTGGCTACCAAGCCTTTCTTCCTGTGAGAGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: NFCLLKSDVLGERMW*SSVGYQAFLPVRVA Trigger: AGCAACTCTCACAGGAAGAAAGGCTTGGTAGCCAACAGATGACCACCACATTCTCTCCCCCAAGACGTCTGATTTCAGAAGGCAAAAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000481004.1 |
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| CDS CCA 90 bp | CTTGAATTTCTTCTGAAATCAGACGTCTTGGGGGAGAGAATGTGGTaGTCATCTGTTGGCTACCAAGCCTTTCTTCCTGTGAGAGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: LEFLLKSDVLGERMW*SSVGYQAFLPVRVA Trigger: AGCAACTCTCACAGGAAGAAAGGCTTGGTAGCCAACAGATGACCACCACATTCTCTCCCCCAAGACGTCTGATTTCAGAAGAAATTCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000657584.1 ENST00000667847.1 |
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| CDS CCA 90 bp | TTGAATTTTTGCCTTCTGAAATCAGACGTCTTGGGGGAGAGAATGTaGTGGTCATCTGTTGGCTACCAAGCCTTTCTTCCTGTGAGAGTT | + |
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Preference number: 5 (lower is better) Translates to: LNFCLLKSDVLGERM*WSSVGYQAFLPVRV Trigger: AACTCTCACAGGAAGAAAGGCTTGGTAGCCAACAGATGACCACCACATTCTCTCCCCCAAGACGTCTGATTTCAGAAGGCAAAAATTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000481004.1 |
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| CDS CCA 90 bp | ATTCTTGAATTTCTTCTGAAATCAGACGTCTTGGGGGAGAGAATGTaGTGGTCATCTGTTGGCTACCAAGCCTTTCTTCCTGTGAGAGTT | + |
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Preference number: 5 (lower is better) Translates to: ILEFLLKSDVLGERM*WSSVGYQAFLPVRV Trigger: AACTCTCACAGGAAGAAAGGCTTGGTAGCCAACAGATGACCACCACATTCTCTCCCCCAAGACGTCTGATTTCAGAAGAAATTCAAGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000657584.1 ENST00000667847.1 |
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| CDS CCA 90 bp | CGAGATTGGGAGTTTCTTCTTGGGCGGTTCTGGGGACAGCATGATTaGTTATATGTTGGAAATGAAATAATCTCCCACTTGTACAGTTTT | + |
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Preference number: 5 (lower is better) Translates to: RDWEFLLGRFWGQHD*LYVGNEIISHLYSF Trigger: AAAACTGTACAAGTGGGAGATTATTTCATTTCCAACATATAACCAATCATGCTGTCCCCAGAACCGCCCAAGAAGAAACTCCCAATCTCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657584.1 |
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| CDS CAA 72 bp | GAGCCGTGTGCCTGTTCCGAGATTGGGAGTTTCTTCTaGGGCGGTTCTGGGGACAGCATGATTGGTTATATG | + |
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Preference number: 6 (lower is better) Translates to: EPCACSEIGSFF*GGSGDSMIGYM Trigger: CATATAACCAATCATGCTGTCCCCAGAACCGCCCAAGAAGAAACTCCCAATCTCGGAACAGGCACACGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657584.1 |
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| CDS CCA 72 bp | GCCAACAACTTCCCTGGCTGCCTTCTCCAGATGACGTaGCTGTCATTCTTGTCCTCTCAGAATAACAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: ANNFPGCLLQMT*LSFLSSQNNKH Trigger: GTGCTTGTTATTCTGAGAGGACAAGAATGACAGCCACGTCATCTGGAGAAGGCAGCCAGGGAAGTTGTTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481004.1 |
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| CDS GCA 72 bp | CTTATCTCAACGGCTTTTCTGATAATTCGAGCCGTGTaGCTGTTCCGAGATTGGGAGTTTCTTCTTGGGCGG | + |
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Preference number: 6 (lower is better) Translates to: LISTAFLIIRAV*LFRDWEFLLGR Trigger: CCGCCCAAGAAGAAACTCCCAATCTCGGAACAGGCACACGGCTCGAATTATCAGAAAAGCCGTTGAGATAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657584.1 |
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| CDS CCA 72 bp | AGACGTCTTGGGGGAGAGAATGTGGTGGTCATCTGTTaGCTACCAAGCCTTTCTTCCTGTGAGAGTTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: RRLGGENVVVIC*LPSLSSCESCF Trigger: AAAGCAACTCTCACAGGAAGAAAGGCTTGGTAGCCAACAGATGACCACCACATTCTCTCCCCCAAGACGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000481004.1 ENST00000657584.1 ENST00000667847.1 |
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| CDS CCA 72 bp | CTTCTGAAATCAGACGTCTTGGGGGAGAGAATGTGGTaGTCATCTGTTGGCTACCAAGCCTTTCTTCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: LLKSDVLGERMW*SSVGYQAFLPV Trigger: CACAGGAAGAAAGGCTTGGTAGCCAACAGATGACCACCACATTCTCTCCCCCAAGACGTCTGATTTCAGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000481004.1 ENST00000657584.1 ENST00000667847.1 |
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| CDS CCA 72 bp | TGCCTTCTGAAATCAGACGTCTTGGGGGAGAGAATGTaGTGGTCATCTGTTGGCTACCAAGCCTTTCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: CLLKSDVLGERM*WSSVGYQAFLP Trigger: AGGAAGAAAGGCTTGGTAGCCAACAGATGACCACCACATTCTCTCCCCCAAGACGTCTGATTTCAGAAGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000481004.1 |
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| CDS CCA 72 bp | CTTGACTACTTCCCTGGCTGCCTTCTCCAGATGACGTaGCTGTCATTCTTGTCCTCTCAGAATAACAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: LDYFPGCLLQMT*LSFLSSQNNKH Trigger: GTGCTTGTTATTCTGAGAGGACAAGAATGACAGCCACGTCATCTGGAGAAGGCAGCCAGGGAAGTAGTCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667847.1 |
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| CDS TCA 72 bp | TTTCTCTTGACTACTTCCCTGGCTGCCTTCTCCAGATaGCGTGGCTGTCATTCTTGTCCTCTCAGAATAACA | + |
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Preference number: 6 (lower is better) Translates to: FLLTTSLAAFSR*RGCHSCPLRIT Trigger: TGTTATTCTGAGAGGACAAGAATGACAGCCACGTCATCTGGAGAAGGCAGCCAGGGAAGTAGTCAAGAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667847.1 |
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| CDS CCA 72 bp | TTTCTTCTGAAATCAGACGTCTTGGGGGAGAGAATGTaGTGGTCATCTGTTGGCTACCAAGCCTTTCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: FLLKSDVLGERM*WSSVGYQAFLP Trigger: AGGAAGAAAGGCTTGGTAGCCAACAGATGACCACCACATTCTCTCCCCCAAGACGTCTGATTTCAGAAGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000657584.1 ENST00000667847.1 |
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| CDS CAA 90 bp | GGACAGCATGATTGGTTATATGTTGGAAATGAAATAATCTCCCACTaGTACAGTTTTGCTATCACAGATTTTCAAGCAATTGCTCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: GQHDWLYVGNEIISH*YSFAITDFQAIAPL Trigger: GAGAGGAGCAATTGCTTGAAAATCTGTGATAGCAAAACTGTACAAGTGGGAGATTATTTCATTTCCAACATATAACCAATCATGCTGTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657584.1 |
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