Pregenerated sensors for LINC02039 (Homo sapiens)
Ensembl gene IDs: ENSG00000248107Ensembl transcript IDs: ENST00000507428.1, ENST00000667560.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCCGAGATTAGTTGTTCCAGGTACTCCTCAAGGACATGCTGGGACTaGTGTACTTTGTTAATTTCTGCTCAGTCATCTTCTGCTCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: PEISCSRYSSRTCWD*CTLLISAQSSSALA Trigger: AGCCAGAGCAGAAGATGACTGAGCAGAAATTAACAAAGTACATCAGTCCCAGCATGTCCTTGAGGAGTACCTGGAACAACTAATCTCGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667560.1 |
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| CDS CCA 90 bp | AATTTGAAGAAGTGCCAAACCTTAGAATCCTGTCTTCATCACATGTaGGCCTCCTGTAAAGTGTGTCCAAGGGATTTAAGATTTAAGTTA | + |
|
Preference number: 5 (lower is better) Translates to: NLKKCQTLESCLHHM*ASCKVCPRDLRFKL Trigger: TAACTTAAATCTTAAATCCCTTGGACACACTTTACAGGAGGCCCACATGTGATGAAGACAGGATTCTAAGGTTTGGCACTTCTTCAAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507428.1 |
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| CDS GCA 72 bp | GATGGAGGCGAGTCCCAGAATAGGCTTCCCAACGTCTaGTGGGCCCCAGGTGCTTGTGAAACTCTCAATTTG | + |
|
Preference number: 6 (lower is better) Translates to: DGGESQNRLPNV*WAPGACETLNL Trigger: CAAATTGAGAGTTTCACAAGCACCTGGGGCCCAGCAGACGTTGGGAAGCCTATTCTGGGACTCGCCTCCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507428.1 ENST00000667560.1 |
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| CDS TCA 72 bp | CGAATTGCTGACAGCAATCTGGCTGTGTTCAGGAGCTaGATTTTCAAATCATTTAGATGGAGGCGAGTCCCA | + |
|
Preference number: 6 (lower is better) Translates to: RIADSNLAVFRS*IFKSFRWRRVP Trigger: TGGGACTCGCCTCCATCTAAATGATTTGAAAATTCAGCTCCTGAACACAGCCAGATTGCTGTCAGCAATTCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507428.1 ENST00000667560.1 |
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| CDS CCA 72 bp | AAGTGCCAAACCTTAGAATCCTGTCTTCATCACATGTaGGCCTCCTGTAAAGTGTGTCCAAGGGATTTAAGA | + |
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Preference number: 6 (lower is better) Translates to: KCQTLESCLHHM*ASCKVCPRDLR Trigger: TCTTAAATCCCTTGGACACACTTTACAGGAGGCCCACATGTGATGAAGACAGGATTCTAAGGTTTGGCACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507428.1 |
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