Pregenerated sensors for LINC02038 (Homo sapiens)
Ensembl gene IDs: ENSG00000229155Ensembl transcript IDs: ENST00000439074.1, ENST00000445168.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTTCTGCAGCAGGGACAGTTCTGTTGCATTCTGTATGGGTCAGCGTaGGGCTACCACACCTCAGGGCTGCTGAGCTTAAGAGAGGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LLQQGQFCCILYGSA*GYHTSGLLSLREEP Trigger: TGGCTCCTCTCTTAAGCTCAGCAGCCCTGAGGTGTGGTAGCCTCACGCTGACCCATACAGAATGCAACAGAACTGTCCCTGCTGCAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439074.1 ENST00000445168.1 |
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| CDS TCA 90 bp | AGCCTCGTGTACCAAAAACGGTCTGTGCTCTGCGTGTGCGAGGATTaGGAGCCACAGTGGACTAAAGCCAGGAGACTTGGTGTCGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: SLVYQKRSVLCVCED*EPQWTKARRLGVEF Trigger: GAACTCGACACCAAGTCTCCTGGCTTTAGTCCACTGTGGCTCTCAATCCTCGCACACGCAGAGCACAGACCGTTTTTGGTACACGAGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445168.1 |
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| CDS TCA 90 bp | CTGCAGCACCATCAAAAACGGTCTGTGCTCTGCGTGTGCGAGGATTaGGAGCCACAGTGGACTAAAGCCAGGAGACTTGGTGTCGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: LQHHQKRSVLCVCED*EPQWTKARRLGVEF Trigger: GAACTCGACACCAAGTCTCCTGGCTTTAGTCCACTGTGGCTCTCAATCCTCGCACACGCAGAGCACAGACCGTTTTTGATGGTGCTGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000439074.1 |
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| CDS CCA 90 bp | GCTTGGAGCATGTCACTTGGTGTCACCACGCCTCCGTTTTCTCTCTaGTCTAAAGCTCTCCGTCTGATTCTAGGTAGAAGCTGTGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: AWSMSLGVTTPPFSL*SKALRLILGRSCAG Trigger: CCCAGCACAGCTTCTACCTAGAATCAGACGGAGAGCTTTAGACCAGAGAGAAAACGGAGGCGTGGTGACACCAAGTGACATGCTCCAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439074.1 ENST00000445168.1 |
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| CDS TCA 90 bp | GGAGCCGGTTCCATGAAAGAAGTCTATGCAGTTGGGGCAGAACCCTaGGACTTCTGCAGCAGGGACAGTTCTGTTGCATTCTGTATGGGT | + |
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Preference number: 5 (lower is better) Translates to: GAGSMKEVYAVGAEP*DFCSRDSSVAFCMG Trigger: ACCCATACAGAATGCAACAGAACTGTCCCTGCTGCAGAAGTCTCAGGGTTCTGCCCCAACTGCATAGACTTCTTTCATGGAACCGGCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439074.1 ENST00000445168.1 |
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| CDS CCA 90 bp | CCCCCTCCTTTTCTTGTAGTGTCCCTTATCTCACTTAACAAAGTGTaGGCTCTCACCAAACCAGAGAGCCTTCCTGAAACAGGCAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: PPPFLVVSLISLNKV*ALTKPESLPETGRE Trigger: CTCTCTGCCTGTTTCAGGAAGGCTCTCTGGTTTGGTGAGAGCCCACACTTTGTTAAGTGAGATAAGGGACACTACAAGAAAAGGAGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000445168.1 |
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| CDS CCA 72 bp | CAGAGTCGTGCTGGGCTAGCTGCGCCGCTTCTGCCGTaGAAGAACAGGTTCGGCAGCCAATCTCCTGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: QSRAGLAAPLLP*KNRFGSQSPGR Trigger: CCTCCCAGGAGATTGGCTGCCGAACCTGTTCTTCCACGGCAGAAGCGGCGCAGCTAGCCCAGCACGACTCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439074.1 |
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| CDS CCA 72 bp | CGAGTTCTAGCTCTGCCACCAACATGTTCAGCGGCTTaGAGCATGTCACTTGGTGTCACCACGCCTCCGTTT | + |
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Preference number: 6 (lower is better) Translates to: RVLALPPTCSAA*SMSLGVTTPPF Trigger: AAACGGAGGCGTGGTGACACCAAGTGACATGCTCCAAGCCGCTGAACATGTTGGTGGCAGAGCTAGAACTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439074.1 ENST00000445168.1 |
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| CDS CCA 72 bp | CCAATCTCCTGGGAGGAGCCCTCTTTGGTGGAAATTTaGACACACAGGAAGAGCACACACTGGTGGGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: PISWEEPSLVEI*THRKSTHWWGL Trigger: AAGGCCCCACCAGTGTGTGCTCTTCCTGTGTGTCCAAATTTCCACCAAAGAGGGCTCCTCCCAGGAGATTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439074.1 |
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| CDS CCA 72 bp | TCTGCCGTGGAAGAACAGGTTCGGCAGCCAATCTCCTaGGAGGAGCCCTCTTTGGTGGAAATTTGGACACAC | + |
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Preference number: 6 (lower is better) Translates to: SAVEEQVRQPIS*EEPSLVEIWTH Trigger: GTGTGTCCAAATTTCCACCAAAGAGGGCTCCTCCCAGGAGATTGGCTGCCGAACCTGTTCTTCCACGGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439074.1 |
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| CDS CAA 72 bp | TCGAGTTCTAGCTCTGCCACCAACATGTTCAGCGGCTaGGAGCATGTCACTTGGTGTCACCACGCCTCCGTT | + |
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Preference number: 6 (lower is better) Translates to: SSSSSATNMFSG*EHVTWCHHASV Trigger: AACGGAGGCGTGGTGACACCAAGTGACATGCTCCAAGCCGCTGAACATGTTGGTGGCAGAGCTAGAACTCGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439074.1 ENST00000445168.1 |
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| CDS TCA 72 bp | CAGGGACAGTTCTGTTGCATTCTGTATGGGTCAGCGTaGGGCTACCACACCTCAGGGCTGCTGAGCTTAAGA | + |
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Preference number: 6 (lower is better) Translates to: QGQFCCILYGSA*GYHTSGLLSLR Trigger: TCTTAAGCTCAGCAGCCCTGAGGTGTGGTAGCCTCACGCTGACCCATACAGAATGCAACAGAACTGTCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439074.1 ENST00000445168.1 |
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| CDS TCA 72 bp | TACCAAAAACGGTCTGTGCTCTGCGTGTGCGAGGATTaGGAGCCACAGTGGACTAAAGCCAGGAGACTTGGT | + |
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Preference number: 6 (lower is better) Translates to: YQKRSVLCVCED*EPQWTKARRLG Trigger: ACCAAGTCTCCTGGCTTTAGTCCACTGTGGCTCTCAATCCTCGCACACGCAGAGCACAGACCGTTTTTGGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445168.1 |
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| CDS TCA 72 bp | CATCAAAAACGGTCTGTGCTCTGCGTGTGCGAGGATTaGGAGCCACAGTGGACTAAAGCCAGGAGACTTGGT | + |
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Preference number: 6 (lower is better) Translates to: HQKRSVLCVCED*EPQWTKARRLG Trigger: ACCAAGTCTCCTGGCTTTAGTCCACTGTGGCTCTCAATCCTCGCACACGCAGAGCACAGACCGTTTTTGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000439074.1 |
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| CDS CAA 72 bp | AGGATTGAGAGCCACAGTGGACTAAAGCCAGGAGACTaGGTGTCGAGTTCTAGCTCTGCCACCAACATGTTC | + |
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Preference number: 6 (lower is better) Translates to: RIESHSGLKPGD*VSSSSSATNMF Trigger: GAACATGTTGGTGGCAGAGCTAGAACTCGACACCAAGTCTCCTGGCTTTAGTCCACTGTGGCTCTCAATCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439074.1 ENST00000445168.1 |
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| CDS CCA 72 bp | ATGTCACTTGGTGTCACCACGCCTCCGTTTTCTCTCTaGTCTAAAGCTCTCCGTCTGATTCTAGGTAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: MSLGVTTPPFSL*SKALRLILGRS Trigger: GCTTCTACCTAGAATCAGACGGAGAGCTTTAGACCAGAGAGAAAACGGAGGCGTGGTGACACCAAGTGACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439074.1 ENST00000445168.1 |
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| CDS CCA 72 bp | TTTCTTGTAGTGTCCCTTATCTCACTTAACAAAGTGTaGGCTCTCACCAAACCAGAGAGCCTTCCTGAAACA | + |
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Preference number: 6 (lower is better) Translates to: FLVVSLISLNKV*ALTKPESLPET Trigger: TGTTTCAGGAAGGCTCTCTGGTTTGGTGAGAGCCCACACTTTGTTAAGTGAGATAAGGGACACTACAAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445168.1 |
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