Pregenerated sensors for LINC02033 (Homo sapiens)
Ensembl gene IDs: ENSG00000279727Ensembl transcript IDs: ENST00000623207.1, ENST00000623312.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGTGTGAGAGAAAGGGAGGCAGCATGGGAGAGAGACGTTGGGCATTaGGCAGATGATGATGGTTATGGCTGGAGAATCTCTGAAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: CVREREAAWERDVGH*ADDDGYGWRISESW Trigger: CCAGCTTTCAGAGATTCTCCAGCCATAACCATCATCATCTGCTCAATGCCCAACGTCTCTCTCCCATGCTGCCTCCCTTTCTCTCACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623207.1 ENST00000623312.1 |
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| CDS CCA 90 bp | GCTGATGGGTTATCCCTTCTTACTGAGCAGAGAAATGCATTTTCCTaGGTGGTGGGTGGGAGTAAGGATCAGCTGTCTGTTGATGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: ADGLSLLTEQRNAFS*VVGGSKDQLSVDGR Trigger: CCTGCCATCAACAGACAGCTGATCCTTACTCCCACCCACCACCCAGGAAAATGCATTTCTCTGCTCAGTAAGAAGGGATAACCCATCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CCA 72 bp | GAAGGGTGGCTTCCAGGGGCTGTGGGTAAGGGGAAATaGGACTGGTGTTCAGTGGGTGCCGTTTCCAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: EGWLPGAVGKGK*DWCSVGAVSSL Trigger: CAAACTGGAAACGGCACCCACTGAACACCAGTCCCATTTCCCCTTACCCACAGCCCCTGGAAGCCACCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623312.1 |
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| CDS CCA 72 bp | TTCTGGAGGTCAGAAATTTGGGCAGGTCTCAGCCGGTaGTTCTTCTGCTCCGTTTGGCCTTCGCTGGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: FWRSEIWAGLSR*FFCSVWPSLGS Trigger: TGACCCCAGCGAAGGCCAAACGGAGCAGAAGAACCACCGGCTGAGACCTGCCCAAATTTCTGACCTCCAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CCA 72 bp | TGGCTTCCAGGGGCTGTGGGTAAGGGGAAATGGGACTaGTGTTCAGTGGGTGCCGTTTCCAGTTTGCAAGAT | + |
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Preference number: 6 (lower is better) Translates to: WLPGAVGKGKWD*CSVGAVSSLQD Trigger: ATCTTGCAAACTGGAAACGGCACCCACTGAACACCAGTCCCATTTCCCCTTACCCACAGCCCCTGGAAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623312.1 |
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| CDS CCA 72 bp | GGGCTGTGGGTAAGGGGAAATGGGACTGGTGTTCAGTaGGTGCCGTTTCCAGTTTGCAAGATGGAAAAGTTC | + |
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Preference number: 6 (lower is better) Translates to: GLWVRGNGTGVQ*VPFPVCKMEKF Trigger: GAACTTTTCCATCTTGCAAACTGGAAACGGCACCCACTGAACACCAGTCCCATTTCCCCTTACCCACAGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623312.1 |
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| CDS CAA 72 bp | CCTGGGTGGTGGGTGGGAGTAAGGATCAGCTGTCTGTaGATGGCAGGCCTGATTTATCTGCTACCAAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: PGWWVGVRISCL*MAGLIYLLPKG Trigger: TCCTTTTGGTAGCAGATAAATCAGGCCTGCCATCAACAGACAGCTGATCCTTACTCCCACCCACCACCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CAA 90 bp | GAATCTCTGAAAGCTGGCTTCTTGTCAATTCTGGAGGTCAGAAATTaGGGCAGGTCTCAGCCGGTGGTTCTTCTGCTCCGTTTGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: ESLKAGFLSILEVRN*GRSQPVVLLLRLAF Trigger: GAAGGCCAAACGGAGCAGAAGAACCACCGGCTGAGACCTGCCCAAATTTCTGACCTCCAGAATTGACAAGAAGCCAGCTTTCAGAGATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CCA 72 bp | AAGCTGGCTTCTTGTCAATTCTGGAGGTCAGAAATTTaGGCAGGTCTCAGCCGGTGGTTCTTCTGCTCCGTT | + |
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Preference number: 6 (lower is better) Translates to: KLASCQFWRSEI*AGLSRWFFCSV Trigger: AACGGAGCAGAAGAACCACCGGCTGAGACCTGCCCAAATTTCTGACCTCCAGAATTGACAAGAAGCCAGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CAA 72 bp | AAAGCTGGCTTCTTGTCAATTCTGGAGGTCAGAAATTaGGGCAGGTCTCAGCCGGTGGTTCTTCTGCTCCGT | + |
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Preference number: 6 (lower is better) Translates to: KAGFLSILEVRN*GRSQPVVLLLR Trigger: ACGGAGCAGAAGAACCACCGGCTGAGACCTGCCCAAATTTCTGACCTCCAGAATTGACAAGAAGCCAGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CAA 90 bp | ATGCATTTTCCTGGGTGGTGGGTGGGAGTAAGGATCAGCTGTCTGTaGATGGCAGGCCTGATTTATCTGCTACCAAAAGGAATTAAAGTC | + |
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Preference number: 6 (lower is better) Translates to: MHFPGWWVGVRISCL*MAGLIYLLPKGIKV Trigger: GACTTTAATTCCTTTTGGTAGCAGATAAATCAGGCCTGCCATCAACAGACAGCTGATCCTTACTCCCACCCACCACCCAGGAAAATGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CAA 72 bp | GTTTCTAAACAACCCACCTCAAGAACACCTGGTACCTaGCTGATGGGTTATCCCTTCTTACTGAGCAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: VSKQPTSRTPGT*LMGYPFLLSRE Trigger: TTCTCTGCTCAGTAAGAAGGGATAACCCATCAGCAAGGTACCAGGTGTTCTTGAGGTGGGTTGTTTAGAAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CAA 90 bp | AGGAGGAAGGTTTCTAAACAACCCACCTCAAGAACACCTGGTACCTaGCTGATGGGTTATCCCTTCTTACTGAGCAGAGAAATGCATTTT | + |
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Preference number: 6 (lower is better) Translates to: RRKVSKQPTSRTPGT*LMGYPFLLSREMHF Trigger: AAAATGCATTTCTCTGCTCAGTAAGAAGGGATAACCCATCAGCAAGGTACCAGGTGTTCTTGAGGTGGGTTGTTTAGAAACCTTCCTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623207.1 |
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| CDS CCA 72 bp | CTGGTGTTCAGTGGGTGCCGTTTCCAGTTTGCAAGATaGAAAAGTTCTAGAGATTATTTCATTTACTTTATG | + |
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Preference number: 6 (lower is better) Translates to: LVFSGCRFQFAR*KSSRDYFIYFM Trigger: CATAAAGTAAATGAAATAATCTCTAGAACTTTTCCATCTTGCAAACTGGAAACGGCACCCACTGAACACCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623312.1 |
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