Pregenerated sensors for LINC02025 (Homo sapiens)
Ensembl gene IDs: ENSG00000242339, ENSG00000284804Ensembl transcript IDs: ENST00000488348.1, ENST00000647170.1, ENST00000661831.1, ENST00000663690.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGAAATCACCTTTCTTCTGCATTGATCACGCTGGGAGCTGTAGACTaGAGCTGTTCCTGTTTGGCCATCTTGAAACACCCAGCAAAACTC | + |
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Preference number: 5 (lower is better) Translates to: RNHLSSALITLGAVD*SCSCLAILKHPAKL Trigger: GAGTTTTGCTGGGTGTTTCAAGATGGCCAAACAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAGGTGATTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488348.1 |
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| CDS CCA 90 bp | AGAAATCTCCTTTCTTCTGCATTGATCACGCTGGGAGCTGTAGACTaGAGCTGTTCCTGTTTGGCCATCTTGAAACACCCAGCAAAACTC | + |
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Preference number: 5 (lower is better) Translates to: RNLLSSALITLGAVD*SCSCLAILKHPAKL Trigger: GAGTTTTGCTGGGTGTTTCAAGATGGCCAAACAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAGGAGATTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647170.1 |
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| CDS CCA 90 bp | GAGGATAATCTTTCTTCTGCATTGATCACGCTGGGAGCTGTAGACTaGAGCTGTTCCTGTTTGGCCATCTTGAAACACCCAGCAAAACTC | + |
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Preference number: 5 (lower is better) Translates to: EDNLSSALITLGAVD*SCSCLAILKHPAKL Trigger: GAGTTTTGCTGGGTGTTTCAAGATGGCCAAACAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAGATTATCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661831.1 ENST00000663690.1 |
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| CDS GCA 90 bp | ATGAACCAAGTACCCCAGTTGGAAATGCAGAAATCACCTTTCTTCTaGATTGATCACGCTGGGAGCTGTAGACTGGAGCTGTTCCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: MNQVPQLEMQKSPFF*IDHAGSCRLELFLF Trigger: AAACAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAGGTGATTTCTGCATTTCCAACTGGGGTACTTGGTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488348.1 |
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| CDS GCA 90 bp | ATGAACCAAGTACCCCAGTTGGAAATGCAGAAATCTCCTTTCTTCTaGATTGATCACGCTGGGAGCTGTAGACTGGAGCTGTTCCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: MNQVPQLEMQKSPFF*IDHAGSCRLELFLF Trigger: AAACAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAGGAGATTTCTGCATTTCCAACTGGGGTACTTGGTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647170.1 |
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| CDS TCA 72 bp | TGGGCTGCACCCACTGTCCAACCAGTCCCAATGAGATaGACCAAGTACCCCAGTTGGAAATGCAGAAATCAC | + |
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Preference number: 6 (lower is better) Translates to: WAAPTVQPVPMR*TKYPSWKCRNH Trigger: GTGATTTCTGCATTTCCAACTGGGGTACTTGGTTCATCTCATTGGGACTGGTTGGACAGTGGGTGCAGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488348.1 |
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| CDS CAA 90 bp | ACCAAGTACCCCAGTTGGAAATGCAGAAATCACCTTTCTTCTGCATaGATCACGCTGGGAGCTGTAGACTGGAGCTGTTCCTGTTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: TKYPSWKCRNHLSSA*ITLGAVDWSCSCLA Trigger: GGCCAAACAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAGGTGATTTCTGCATTTCCAACTGGGGTACTTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488348.1 |
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| CDS CAA 90 bp | ACCAAGTACCCCAGTTGGAAATGCAGAAATCTCCTTTCTTCTGCATaGATCACGCTGGGAGCTGTAGACTGGAGCTGTTCCTGTTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: TKYPSWKCRNLLSSA*ITLGAVDWSCSCLA Trigger: GGCCAAACAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAGGAGATTTCTGCATTTCCAACTGGGGTACTTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647170.1 |
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| CDS GCA 72 bp | GTACCCCAGTTGGAAATGCAGAAATCACCTTTCTTCTaGATTGATCACGCTGGGAGCTGTAGACTGGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: VPQLEMQKSPFF*IDHAGSCRLEL Trigger: CAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAGGTGATTTCTGCATTTCCAACTGGGGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488348.1 |
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| CDS CCA 72 bp | CTTTCTTCTGCATTGATCACGCTGGGAGCTGTAGACTaGAGCTGTTCCTGTTTGGCCATCTTGAAACACCCA | + |
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Preference number: 6 (lower is better) Translates to: LSSALITLGAVD*SCSCLAILKHP Trigger: TGGGTGTTTCAAGATGGCCAAACAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGATCAATGCAGAAGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000488348.1 ENST00000647170.1 ENST00000661831.1 ENST00000663690.1 |
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| CDS CCA 72 bp | TATGGACATTATCCAAGTATCGAGGATAATCCTTTGTaGGCTGCACCCACTGTCCAACCAGTCCCAATGAGA | + |
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Preference number: 6 (lower is better) Translates to: YGHYPSIEDNPL*AAPTVQPVPMR Trigger: TCTCATTGGGACTGGTTGGACAGTGGGTGCAGCCCACAAAGGATTATCCTCGATACTTGGATAATGTCCATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000488348.1 ENST00000647170.1 |
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| CDS CAA 72 bp | ATATATGGACATTATCCAAGTATCGAGGATAATCCTTaGTGGGCTGCACCCACTGTCCAACCAGTCCCAATG | + |
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Preference number: 6 (lower is better) Translates to: IYGHYPSIEDNP*WAAPTVQPVPM Trigger: CATTGGGACTGGTTGGACAGTGGGTGCAGCCCACAAAGGATTATCCTCGATACTTGGATAATGTCCATATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000488348.1 ENST00000647170.1 |
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