Pregenerated sensors for LINC02023 (Homo sapiens)
Ensembl gene IDs: ENSG00000239205Ensembl transcript IDs: ENST00000472120.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTCTCAGGTTCATGGAAGGTCAGGGTCAGCATTTGCAATGGAGAGTaGGGACCTCCTGAAATTTTGTGCCTGAGACACCTTGCTTACCTC | + |
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Preference number: 5 (lower is better) Translates to: LSGSWKVRVSICNGE*GPPEILCLRHLAYL Trigger: GAGGTAAGCAAGGTGTCTCAGGCACAAAATTTCAGGAGGTCCTCACTCTCCATTGCAAATGCTGACCCTGACCTTCCATGAACCTGAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472120.1 |
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| CDS GCA 90 bp | GATGGAACTGCCTTAGAGAAAGAAGCCAGGCAAGAAGAATGGGATTaGAAGAGGTACCATCAAACAGCCCAGTGTTGCAGAGAGGAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: DGTALEKEARQEEWD*KRYHQTAQCCREER Trigger: CCTTTCCTCTCTGCAACACTGGGCTGTTTGATGGTACCTCTTGCAATCCCATTCTTCTTGCCTGGCTTCTTTCTCTAAGGCAGTTCCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000472120.1 |
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| CDS TCA 90 bp | ATGGAAGGTCAGGGTCAGCATTTGCAATGGAGAGTGAGGACCTCCTaGAATTTTGTGCCTGAGACACCTTGCTTACCTCACCCTAGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: MEGQGQHLQWRVRTS*NFVPETPCLPHPSF Trigger: AAAACTAGGGTGAGGTAAGCAAGGTGTCTCAGGCACAAAATTTCAGGAGGTCCTCACTCTCCATTGCAAATGCTGACCCTGACCTTCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472120.1 |
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| CDS TCA 72 bp | CAGGGTCAGCATTTGCAATGGAGAGTGAGGACCTCCTaGAATTTTGTGCCTGAGACACCTTGCTTACCTCAC | + |
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Preference number: 6 (lower is better) Translates to: QGQHLQWRVRTS*NFVPETPCLPH Trigger: GTGAGGTAAGCAAGGTGTCTCAGGCACAAAATTTCAGGAGGTCCTCACTCTCCATTGCAAATGCTGACCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472120.1 |
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| CDS CAA 72 bp | GGGTGCAAGCAGAAGGACCTAAAATTAAGAACACACTaGGTAGAATCAGTGCCAAAATGTAGAAGAAACTGT | + |
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Preference number: 6 (lower is better) Translates to: GCKQKDLKLRTH*VESVPKCRRNC Trigger: ACAGTTTCTTCTACATTTTGGCACTGATTCTACCAAGTGTGTTCTTAATTTTAGGTCCTTCTGCTTGCACCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472120.1 |
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