Pregenerated sensors for LINC02017 (Homo sapiens)
Ensembl gene IDs: ENSG00000243572Ensembl transcript IDs: ENST00000496829.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTGCACAGTTCTGAGACCAGCCTCATCAATGATGCTGCTAAATACTaGCACAGTTTTAGGGATGGTGAAGAGGAACCCCCACTCATTCCT | + |
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Preference number: 5 (lower is better) Translates to: LHSSETSLINDAAKY*HSFRDGEEEPPLIP Trigger: AGGAATGAGTGGGGGTTCCTCTTCACCATCCCTAAAACTGTGGCAGTATTTAGCAGCATCATTGATGAGGCTGGTCTCAGAACTGTGCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS GCA 90 bp | AGAGGTAGAAGCTTTTTCATTGAGAGGCCAGGCAGGGCAGATGTTTaGACAGTTCTGAGACCAGCCTCATCAATGATGCTGCTAAATACT | + |
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Preference number: 5 (lower is better) Translates to: RGRSFFIERPGRADV*TVLRPASSMMLLNT Trigger: AGTATTTAGCAGCATCATTGATGAGGCTGGTCTCAGAACTGTGCAAACATCTGCCCTGCCTGGCCTCTCAATGAAAAAGCTTCTACCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS CCA 90 bp | AGAAGTACGACTTACACTGTAACAGGGAGGTGGCCAGCGAGTTGGTaGAAATACCTGTTAAGAGGTAGAAGCTTTTTCATTGAGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: RSTTYTVTGRWPASW*KYLLRGRSFFIERP Trigger: TGGCCTCTCAATGAAAAAGCTTCTACCTCTTAACAGGTATTTCCACCAACTCGCTGGCCACCTCCCTGTTACAGTGTAAGTCGTACTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS GCA 90 bp | TTGAAGAAAGCCTGGTCCCTGGAGAACTTCCATCCACTGCACGAATaGATGCTGCAAATGACATTCACATTCGTGATTTCCAGAAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: LKKAWSLENFHPLHE*MLQMTFTFVISRKG Trigger: TCCTTTTCTGGAAATCACGAATGTGAATGTCATTTGCAGCATGCATTCGTGCAGTGGATGGAAGTTCTCCAGGGACCAGGCTTTCTTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS CCA 90 bp | CAAAGAAGTACGACTTACACTGTAACAGGGAGGTGGCCAGCGAGTTaGTGGAAATACCTGTTAAGAGGTAGAAGCTTTTTCATTGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: QRSTTYTVTGRWPAS*WKYLLRGRSFFIER Trigger: CCTCTCAATGAAAAAGCTTCTACCTCTTAACAGGTATTTCCACCAACTCGCTGGCCACCTCCCTGTTACAGTGTAAGTCGTACTTCTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS GCA 72 bp | AGCTTTTTCATTGAGAGGCCAGGCAGGGCAGATGTTTaGACAGTTCTGAGACCAGCCTCATCAATGATGCTG | + |
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Preference number: 6 (lower is better) Translates to: SFFIERPGRADV*TVLRPASSMML Trigger: CAGCATCATTGATGAGGCTGGTCTCAGAACTGTGCAAACATCTGCCCTGCCTGGCCTCTCAATGAAAAAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS GCA 72 bp | GCCTGGTCCCTGGAGAACTTCCATCCACTGCACGAATaGATGCTGCAAATGACATTCACATTCGTGATTTCC | + |
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Preference number: 6 (lower is better) Translates to: AWSLENFHPLHE*MLQMTFTFVIS Trigger: GGAAATCACGAATGTGAATGTCATTTGCAGCATGCATTCGTGCAGTGGATGGAAGTTCTCCAGGGACCAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS CCA 72 bp | ACGACTTACACTGTAACAGGGAGGTGGCCAGCGAGTTaGTGGAAATACCTGTTAAGAGGTAGAAGCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: TTYTVTGRWPAS*WKYLLRGRSFF Trigger: GAAAAAGCTTCTACCTCTTAACAGGTATTTCCACCAACTCGCTGGCCACCTCCCTGTTACAGTGTAAGTCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS CAA 72 bp | TTTAGGGATGGTGAAGAGGAACCCCCACTCATTCCTTaGTACCCATCTTCTCTTCATACAGGTGCTCACATT | + |
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Preference number: 6 (lower is better) Translates to: FRDGEEEPPLIP*YPSSLHTGAHI Trigger: AATGTGAGCACCTGTATGAAGAGAAGATGGGTACAAAGGAATGAGTGGGGGTTCCTCTTCACCATCCCTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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| CDS CCA 72 bp | ACTTACACTGTAACAGGGAGGTGGCCAGCGAGTTGGTaGAAATACCTGTTAAGAGGTAGAAGCTTTTTCATT | + |
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Preference number: 6 (lower is better) Translates to: TYTVTGRWPASW*KYLLRGRSFFI Trigger: AATGAAAAAGCTTCTACCTCTTAACAGGTATTTCCACCAACTCGCTGGCCACCTCCCTGTTACAGTGTAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496829.1 |
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