Pregenerated sensors for LINC02013 (Homo sapiens)
Ensembl gene IDs: ENSG00000228730Ensembl transcript IDs: ENST00000438156.1, ENST00000658848.1, ENST00000665139.1, ENST00000668289.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAGGGTCAAAATCTTGTAACCTCCAGCTGCATGGCTCCTGGGCCATaGTTTCTAATCCTGTGGCTAGTTTCTTGGTCTGGTCCCCAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: EGQNLVTSSCMAPGP*FLILWLVSWSGPQA Trigger: TGCCTGGGGACCAGACCAAGAAACTAGCCACAGGATTAGAAACCATGGCCCAGGAGCCATGCAGCTGGAGGTTACAAGATTTTGACCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000668289.1 |
||
| CDS GCA 90 bp | CTCCCTGCGCGAAAGAAGAGGCTGTTTCTTGTTACAACAGTACCGTaGTGTGCTTCAGCCATCCATAACACGCCCACTGTATGTAGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: LPARKKRLFLVTTVP*CASAIHNTPTVCSL Trigger: GAGACTACATACAGTGGGCGTGTTATGGATGGCTGAAGCACAGCACGGTACTGTTGTAACAAGAAACAGCCTCTTCTTTCGCGCAGGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658848.1 |
||
| CDS GCA 90 bp | ATTTGTCCCTTACAGAAGAGGCTGTTTCTTGTTACAACAGTACCGTaGTGTGCTTCAGCCATCCATAACACGCCCACTGTATGTAGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: ICPLQKRLFLVTTVP*CASAIHNTPTVCSL Trigger: GAGACTACATACAGTGGGCGTGTTATGGATGGCTGAAGCACAGCACGGTACTGTTGTAACAAGAAACAGCCTCTTCTGTAAGGGACAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000438156.1 ENST00000665139.1 |
||
| CDS GCA 90 bp | CAGGCCTCCATCTCGTTTCATGTCCTTGGGAACATAATCTGTAACTaGATGGCAATACTTTGTTTTAGTCTCTGCTATTTTACAATAGTG | + |
|
Preference number: 5 (lower is better) Translates to: QASISFHVLGNIICN*MAILCFSLCYFTIV Trigger: CACTATTGTAAAATAGCAGAGACTAAAACAAAGTATTGCCATGCAGTTACAGATTATGTTCCCAAGGACATGAAACGAGATGGAGGCCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668289.1 |
||
| CDS CAA 72 bp | TGGTTCAGCCTCCGCCCAGGGATGCGCAAGGACAGCTaGGGGGCTGGAAACAATGTAGTTCTTCCGGTTAAA | + |
|
Preference number: 6 (lower is better) Translates to: WFSLRPGMRKDS*GAGNNVVLPVK Trigger: TTTAACCGGAAGAACTACATTGTTTCCAGCCCCCAAGCTGTCCTTGCGCATCCCTGGGCGGAGGCTGAACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000668289.1 |
||
| CDS CCA 72 bp | CCTGGGCCATGGTTTCTAATCCTGTGGCTAGTTTCTTaGTCTGGTCCCCAGGCAAGAGGGAAGTTATCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: PGPWFLILWLVS*SGPQARGKLSW Trigger: CCAAGATAACTTCCCTCTTGCCTGGGGACCAGACCAAGAAACTAGCCACAGGATTAGAAACCATGGCCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000668289.1 |
||
| CDS CAA 72 bp | GCTTCTCTCTCCCTGCGCGAAAGAAGAGGCTGTTTCTaGTTACAACAGTACCGTGCTGTGCTTCAGCCATCC | + |
|
Preference number: 6 (lower is better) Translates to: ASLSLRERRGCF*LQQYRAVLQPS Trigger: GGATGGCTGAAGCACAGCACGGTACTGTTGTAACAAGAAACAGCCTCTTCTTTCGCGCAGGGAGAGAGAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658848.1 |
||
| CDS GCA 72 bp | CAGTTTAGGGAGGGTCAAAATCTTGTAACCTCCAGCTaGATGGCTCCTGGGCCATGGTTTCTAATCCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: QFREGQNLVTSS*MAPGPWFLILW Trigger: CCACAGGATTAGAAACCATGGCCCAGGAGCCATGCAGCTGGAGGTTACAAGATTTTGACCCTCCCTAAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000668289.1 |
||
| CDS CCA 72 bp | GCCATGGTTTCTAATCCTGTGGCTAGTTTCTTGGTCTaGTCCCCAGGCAAGAGGGAAGTTATCTTGGGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: AMVSNPVASFLV*SPGKREVILGS Trigger: GCTTCCCAAGATAACTTCCCTCTTGCCTGGGGACCAGACCAAGAAACTAGCCACAGGATTAGAAACCATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000668289.1 |
||
| CDS CAA 72 bp | TCCTGGGCCATGGTTTCTAATCCTGTGGCTAGTTTCTaGGTCTGGTCCCCAGGCAAGAGGGAAGTTATCTTG | + |
|
Preference number: 6 (lower is better) Translates to: SWAMVSNPVASF*VWSPGKREVIL Trigger: CAAGATAACTTCCCTCTTGCCTGGGGACCAGACCAAGAAACTAGCCACAGGATTAGAAACCATGGCCCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000668289.1 |
||
| CDS CAA 90 bp | AAATCTCTGGCTTCTCTCTCCCTGCGCGAAAGAAGAGGCTGTTTCTaGTTACAACAGTACCGTGCTGTGCTTCAGCCATCCATAACACGC | + |
|
Preference number: 6 (lower is better) Translates to: KSLASLSLRERRGCF*LQQYRAVLQPSITR Trigger: GCGTGTTATGGATGGCTGAAGCACAGCACGGTACTGTTGTAACAAGAAACAGCCTCTTCTTTCGCGCAGGGAGAGAGAAGCCAGAGATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658848.1 |
||
| CDS CCA 72 bp | AATCTTGTAACCTCCAGCTGCATGGCTCCTGGGCCATaGTTTCTAATCCTGTGGCTAGTTTCTTGGTCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: NLVTSSCMAPGP*FLILWLVSWSG Trigger: ACCAGACCAAGAAACTAGCCACAGGATTAGAAACCATGGCCCAGGAGCCATGCAGCTGGAGGTTACAAGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000668289.1 |
||
| CDS CAA 90 bp | AAGCTGCACTCTCGGCAATTTGTCCCTTACAGAAGAGGCTGTTTCTaGTTACAACAGTACCGTGCTGTGCTTCAGCCATCCATAACACGC | + |
|
Preference number: 6 (lower is better) Translates to: KLHSRQFVPYRRGCF*LQQYRAVLQPSITR Trigger: GCGTGTTATGGATGGCTGAAGCACAGCACGGTACTGTTGTAACAAGAAACAGCCTCTTCTGTAAGGGACAAATTGCCGAGAGTGCAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000438156.1 ENST00000665139.1 |
||
| CDS GCA 72 bp | CGAAAGAAGAGGCTGTTTCTTGTTACAACAGTACCGTaGTGTGCTTCAGCCATCCATAACACGCCCACTGTA | + |
|
Preference number: 6 (lower is better) Translates to: RKKRLFLVTTVP*CASAIHNTPTV Trigger: TACAGTGGGCGTGTTATGGATGGCTGAAGCACAGCACGGTACTGTTGTAACAAGAAACAGCCTCTTCTTTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658848.1 |
||
| CDS CAA 72 bp | TCTCGGCAATTTGTCCCTTACAGAAGAGGCTGTTTCTaGTTACAACAGTACCGTGCTGTGCTTCAGCCATCC | + |
|
Preference number: 6 (lower is better) Translates to: SRQFVPYRRGCF*LQQYRAVLQPS Trigger: GGATGGCTGAAGCACAGCACGGTACTGTTGTAACAAGAAACAGCCTCTTCTGTAAGGGACAAATTGCCGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000438156.1 ENST00000665139.1 |
||
| CDS GCA 72 bp | TTACAGAAGAGGCTGTTTCTTGTTACAACAGTACCGTaGTGTGCTTCAGCCATCCATAACACGCCCACTGTA | + |
|
Preference number: 6 (lower is better) Translates to: LQKRLFLVTTVP*CASAIHNTPTV Trigger: TACAGTGGGCGTGTTATGGATGGCTGAAGCACAGCACGGTACTGTTGTAACAAGAAACAGCCTCTTCTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000438156.1 ENST00000665139.1 |
||
| CDS CAA 72 bp | GTTCAAGCCAGCCCAACAAAACGGTTAGTAACAAAATaGGCTACAGGCCTCCATCTCGTTTCATGTCCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: VQASPTKRLVTK*ATGLHLVSCPW Trigger: CCAAGGACATGAAACGAGATGGAGGCCTGTAGCCAATTTTGTTACTAACCGTTTTGTTGGGCTGGCTTGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668289.1 |
||
| CDS CAA 72 bp | TGTTTTACTCAAACCAAAAGCTGCACTCTCGGCAATTaGTCCCTTACAGAAGAGGCTGTTTCTTGTTACAAC | + |
|
Preference number: 6 (lower is better) Translates to: CFTQTKSCTLGN*SLTEEAVSCYN Trigger: GTTGTAACAAGAAACAGCCTCTTCTGTAAGGGACAAATTGCCGAGAGTGCAGCTTTTGGTTTGAGTAAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000438156.1 ENST00000665139.1 |
||
| CDS TCA 72 bp | AGGGCATGGTTTACAAAATATCTTAAGCACCAATCTTaGGAGCAGTTTAGGGAGGGTCAAAATCTTGTAACC | + |
|
Preference number: 6 (lower is better) Translates to: RAWFTKYLKHQS*EQFREGQNLVT Trigger: GGTTACAAGATTTTGACCCTCCCTAAACTGCTCTCAAGATTGGTGCTTAAGATATTTTGTAAACCATGCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000668289.1 |
||
| CDS CAA 72 bp | CCTGTGGATTTGTGTTTTTCTGACTGTAGGAGCATATaGGGTCTACACTCAAGGAAAACTAGAAGTGCAATA | + |
|
Preference number: 6 (lower is better) Translates to: PVDLCFSDCRSI*GLHSRKTRSAI Trigger: TATTGCACTTCTAGTTTTCCTTGAGTGTAGACCCAATATGCTCCTACAGTCAGAAAAACACAAATCCACAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000665139.1 |
||
| CDS CAA 72 bp | CTTGTTTTAAGTCTTACTGTGAACACATGCAGCTATTaGCCTGTGGATTTGTGTTTTTCTGACTGTAGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: LVLSLTVNTCSY*PVDLCFSDCRS Trigger: GCTCCTACAGTCAGAAAAACACAAATCCACAGGCAAATAGCTGCATGTGTTCACAGTAAGACTTAAAACAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000665139.1 |
||
| CDS CAA 90 bp | AAATACGGTCTTGTTTTAAGTCTTACTGTGAACACATGCAGCTATTaGCCTGTGGATTTGTGTTTTTCTGACTGTAGGAGCATATTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: KYGLVLSLTVNTCSY*PVDLCFSDCRSILG Trigger: ACCCAATATGCTCCTACAGTCAGAAAAACACAAATCCACAGGCAAATAGCTGCATGTGTTCACAGTAAGACTTAAAACAAGACCGTATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000665139.1 |
||
| CDS CCA 72 bp | AAAAAGAACTTGTTGGTCTTAAGCTGTAGACAATCTTaGGTGCTTTGCACATCTTTCTCTATGGTTCTGTCA | + |
|
Preference number: 6 (lower is better) Translates to: KKNLLVLSCRQS*VLCTSFSMVLS Trigger: TGACAGAACCATAGAGAAAGATGTGCAAAGCACCCAAGATTGTCTACAGCTTAAGACCAACAAGTTCTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668289.1 |
||
| CDS GCA 72 bp | AAATACGGTCTTGTTTTAAGTCTTACTGTGAACACATaGAGCTATTTGCCTGTGGATTTGTGTTTTTCTGAC | + |
|
Preference number: 6 (lower is better) Translates to: KYGLVLSLTVNT*SYLPVDLCFSD Trigger: GTCAGAAAAACACAAATCCACAGGCAAATAGCTGCATGTGTTCACAGTAAGACTTAAAACAAGACCGTATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000658848.1 ENST00000665139.1 |
||