Pregenerated sensors for LINC02008 (Homo sapiens)
Ensembl gene IDs: ENSG00000239440Ensembl transcript IDs: ENST00000470263.5, ENST00000494340.2, ENST00000653255.1, ENST00000654980.1, ENST00000666096.1, ENST00000666519.1, ENST00000668833.1
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCGCAGCCAGCCTTTCACATAACAATGCATCTTGTCCAGCCTCATaGTCCACTGGCTTTCAAATGTCTTGCACTACTGGCTCTCTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: AAASLSHNNASCPAS*STGFQMSCTTGSLN Trigger: ATTCAGAGAGCCAGTAGTGCAAGACATTTGAAAGCCAGTGGAGCATGAGGCTGGACAAGATGCATTGTTATGTGAAAGGCTGGCTGCGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS TCA 90 bp | GGTACCATTCATTTTGTACAACCAAGGAAGAGTCGCTGTTTTAAGTaGCCTCCTGGCATGTTTGCTCAAGGGTCCAGGAAGTGCCTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: GTIHFVQPRKSRCFK*PPGMFAQGSRKCLL Trigger: GAGCAGGCACTTCCTGGACCCTTGAGCAAACATGCCAGGAGGTCACTTAAAACAGCGACTCTTCCTTGGTTGTACAAAATGAATGGTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000666519.1 ENST00000668833.1 |
||
| CDS GCA 90 bp | GACAGCAACCACAGACAACATCCGATTACAACTTCAGAAGAGAGCTaGCCAGCCAAGCCCAGTCAATGCATGAATAACAGGAAGAATCCT | + |
|
Preference number: 5 (lower is better) Translates to: DSNHRQHPITTSEES*PAKPSQCMNNRKNP Trigger: AGGATTCTTCCTGTTATTCATGCATTGACTGGGCTTGGCTGGGCAGCTCTCTTCTGAAGTTGTAATCGGATGTTGTCTGTGGTTGCTGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS GCA 90 bp | AGGTTTCCTAAGGCTTCCTCAAAAGCCAAGCAGATGCCACCATCATaGTTCATGTATAGCCTGTGGATCCATGAGCCAATTAAACCCCTT | + |
|
Preference number: 5 (lower is better) Translates to: RFPKASSKAKQMPPS*FMYSLWIHEPIKPL Trigger: AAGGGGTTTAATTGGCTCATGGATCCACAGGCTATACATGAAGCATGATGGTGGCATCTGCTTGGCTTTTGAGGAAGCCTTAGGAAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS TCA 90 bp | TGCTTCTGTTCTGTTCCCACTGGCATTCTTTTAGCAAATTACCAATaGACCTGTCTGCATCTCCCCTCCATAAAGGGTTTGAGCACATGG | + |
|
Preference number: 5 (lower is better) Translates to: CFCSVPTGILLANYQ*TCLHLPSIKGLSTW Trigger: CCATGTGCTCAAACCCTTTATGGAGGGGAGATGCAGACAGGTTCATTGGTAATTTGCTAAAAGAATGCCAGTGGGAACAGAACAGAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653255.1 |
||
| CDS GCA 90 bp | ACCATGATTATAGGTTTCCTAAGGCTTCCTCAAAAGCCAAGCAGATaGCACCATCATGCTTCATGTATAGCCTGTGGATCCATGAGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: TMIIGFLRLPQKPSR*HHHASCIACGSMSQ Trigger: TTGGCTCATGGATCCACAGGCTATACATGAAGCATGATGGTGGCATCTGCTTGGCTTTTGAGGAAGCCTTAGGAAACCTATAATCATGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS GCA 90 bp | AATGCATCTTGTCCAGCCTCATGCTCCACTGGCTTTCAAATGTCTTaGACTACTGGCTCTCTGAATTTAGCTGTTGTATCTCTAGAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: NASCPASCSTGFQMS*TTGSLNLAVVSLEF Trigger: GAACTCTAGAGATACAACAGCTAAATTCAGAGAGCCAGTAGTGCAAGACATTTGAAAGCCAGTGGAGCATGAGGCTGGACAAGATGCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS GCA 90 bp | TTCATTTCTGCTCGGAAACTTGCCTCTGTCTCTTCTTCTGCCTTATaGTCCTTAGTCAAATTCTTTCTTCTGAGGAGGCAGGAATTAAGG | + |
|
Preference number: 5 (lower is better) Translates to: FISARKLASVSSSAL*SLVKFFLLRRQELR Trigger: CCTTAATTCCTGCCTCCTCAGAAGAAAGAATTTGACTAAGGAGCATAAGGCAGAAGAAGAGACAGAGGCAAGTTTCCGAGCAGAAATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470263.5 |
||
| CDS CCA 90 bp | TTGTCCAGCCTCATGCTCCACTGGCTTTCAAATGTCTTGCACTACTaGCTCTCTGAATTTAGCTGTTGTATCTCTAGAGTTCAGGAAATT | + |
|
Preference number: 5 (lower is better) Translates to: LSSLMLHWLSNVLHY*LSEFSCCISRVQEI Trigger: AATTTCCTGAACTCTAGAGATACAACAGCTAAATTCAGAGAGCCAGTAGTGCAAGACATTTGAAAGCCAGTGGAGCATGAGGCTGGACAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS TCA 90 bp | TTACAACTTCAGAAGAGAGCTGCCCAGCCAAGCCCAGTCAATGCATaGATAACAGGAAGAATCCTTAAGATTCAATCCAGACATATTGTG | + |
|
Preference number: 5 (lower is better) Translates to: LQLQKRAAQPSPVNA*ITGRILKIQSRHIV Trigger: CACAATATGTCTGGATTGAATCTTAAGGATTCTTCCTGTTATTCATGCATTGACTGGGCTTGGCTGGGCAGCTCTCTTCTGAAGTTGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS TCA 90 bp | CTGAATGTGTCAGATCCTAAAAATATTTCCCTGAAGCGTTGTTACTaGGACCTCTGGTGTTACCATCTCATCCTGAATGACCACAGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LNVSDPKNISLKRCY*DLWCYHLILNDHRK Trigger: CTTTCTGTGGTCATTCAGGATGAGATGGTAACACCAGAGGTCTCAGTAACAACGCTTCAGGGAAATATTTTTAGGATCTGACACATTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666519.1 |
||
| CDS TCA 90 bp | CCTTCTCAGGATAATGCAATGCAATATCATATGGATCATTCAGCCTaGATAATAATTTCTCAACTGATATCTGCCGCAGCCAGCCTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: PSQDNAMQYHMDHSA*IIISQLISAAASLS Trigger: TGAAAGGCTGGCTGCGGCAGATATCAGTTGAGAAATTATTATTCAGGCTGAATGATCCATATGATATTGCATTGCATTATCCTGAGAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS GCA 90 bp | AAACCCCAAGTCAAAAAGTCAAACTGTGCACTTGATCTGTCAATCTaGCAGCTTGGCCTTCTTCCAAGTGTAATTTACTTCCTTTCATTT | + |
|
Preference number: 5 (lower is better) Translates to: KPQVKKSNCALDLSI*QLGLLPSVIYFLSF Trigger: AAATGAAAGGAAGTAAATTACACTTGGAAGAAGGCCAAGCTGGCAGATTGACAGATCAAGTGCACAGTTTGACTTTTTGACTTGGGGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000470263.5 |
||
| CDS CCA 90 bp | ACCATTGCCAATTTAATCTTGAAAATGCTTCTGTTCTGTTCCCACTaGCATTCTTTTAGCAAATTACCAATGAACCTGTCTGCATCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: TIANLILKMLLFCSH*HSFSKLPMNLSASP Trigger: GGGAGATGCAGACAGGTTCATTGGTAATTTGCTAAAAGAATGCCAGTGGGAACAGAACAGAAGCATTTTCAAGATTAAATTGGCAATGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653255.1 |
||
| CDS TCA 90 bp | CTGAATGTGTCAGATCCTAAAAATATTTCCCTGAAGCGTTGTTACTaGGACCTCTGGTGTTACCATCTCATCCTGTTTGCTCTTTTATTT | + |
|
Preference number: 5 (lower is better) Translates to: LNVSDPKNISLKRCY*DLWCYHLILFALLF Trigger: AAATAAAAGAGCAAACAGGATGAGATGGTAACACCAGAGGTCTCAGTAACAACGCTTCAGGGAAATATTTTTAGGATCTGACACATTCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000668833.1 |
||
| CDS CCA 90 bp | TACAAATTACCTAGTCTCAGATATTTGTTTACAGCAGTGCAAGAGTaGGCTAATCCACAGACAAGTGTCTTTCATCCAGTAAGTCACTTT | + |
|
Preference number: 5 (lower is better) Translates to: YKLPSLRYLFTAVQE*ANPQTSVFHPVSHF Trigger: AAAGTGACTTACTGGATGAAAGACACTTGTCTGTGGATTAGCCCACTCTTGCACTGCTGTAAACAAATATCTGAGACTAGGTAATTTGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS CCA 90 bp | GCAACAAAATCATCTCTCTCCTTTAGAGCTATTTCCATAAATCATTaGGGAAAAGCCATCGATTGCATTGTATTGTATGAAAGATGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: ATKSSLSFRAISINH*GKAIDCIVLYERCV Trigger: AACACATCTTTCATACAATACAATGCAATCGATGGCTTTTCCCCAATGATTTATGGAAATAGCTCTAAAGGAGAGAGATGATTTTGTTGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000653255.1 ENST00000666096.1 ENST00000666519.1 |
||
| CDS TCA 72 bp | TCACCCGCTGATCTTCCACCTGGGCTTTCTGTTGGCTaGCCCCAGCTGAGACCAGTCAATAAGGGGATGGCT | + |
|
Preference number: 6 (lower is better) Translates to: SPADLPPGLSVG*PQLRPVNKGMA Trigger: AGCCATCCCCTTATTGACTGGTCTCAGCTGGGGTCAGCCAACAGAAAGCCCAGGTGGAAGATCAGCGGGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666096.1 |
||
| CDS CCA 72 bp | TGTCTGCATCTCCCCTCCATAAAGGGTTTGAGCACATaGCAGCCCAAGCAGGTTCCACGAGTGGGTCAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: CLHLPSIKGLST*QPKQVPRVGQR Trigger: TCTCTGACCCACTCGTGGAACCTGCTTGGGCTGCCATGTGCTCAAACCCTTTATGGAGGGGAGATGCAGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000494340.2 ENST00000653255.1 ENST00000654980.1 |
||
| CDS CAA 72 bp | GGAAGAGTCGCTGTTTTAAGTGACCTCCTGGCATGTTaGCTCAAGGGTCCAGGAAGTGCCTGCTCTCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: GRVAVLSDLLAC*LKGPGSACSLW Trigger: CCACAGAGAGCAGGCACTTCCTGGACCCTTGAGCAAACATGCCAGGAGGTCACTTAAAACAGCGACTCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000666519.1 ENST00000668833.1 |
||
| CDS TCA 72 bp | CACCTCCTGACCCTCTTTCCTCCTGCTCTAGCCATATaGAGTGCTGGCTCTCTCTTCACCTTCCACCATGAT | + |
|
Preference number: 6 (lower is better) Translates to: HLLTLFPPALAI*SAGSLFTFHHD Trigger: ATCATGGTGGAAGGTGAAGAGAGAGCCAGCACTTCATATGGCTAGAGCAGGAGGAAAGAGGGTCAGGAGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS GCA 72 bp | CAGGCTGGTACAGGCAGAACACCTCAAGTGAGCATGTaGACAACTCCAGTAAACACACTGCGTGTACAACCC | + |
|
Preference number: 6 (lower is better) Translates to: QAGTGRTPQVSM*TTPVNTLRVQP Trigger: GGGTTGTACACGCAGTGTGTTTACTGGAGTTGTGCACATGCTCACTTGAGGTGTTCTGCCTGTACCAGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470263.5 |
||
| CDS CAA 90 bp | TGCCTCAGTTTATTAATCTGTCTGCATCTCCCCTCCATAAAGGGTTaGAGCACATGGCAGCCCAAGCAGGTTCCACGAGTGGGTCAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: CLSLLICLHLPSIKG*STWQPKQVPRVGQR Trigger: TCTCTGACCCACTCGTGGAACCTGCTTGGGCTGCCATGTGCTCAAACCCTTTATGGAGGGGAGATGCAGACAGATTAATAAACTGAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494340.2 |
||
| CDS TCA 72 bp | ATAGGCGTTTTCTCTGATCTTTCTCTTCTCACCCGCTaGTCTTCCACCTGGGCTTTCTGTTGGCTGACCCCA | + |
|
Preference number: 6 (lower is better) Translates to: IGVFSDLSLLTR*SSTWAFCWLTP Trigger: TGGGGTCAGCCAACAGAAAGCCCAGGTGGAAGATCAGCGGGTGAGAAGAGAAAGATCAGAGAAAACGCCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666096.1 |
||
| CDS CCA 72 bp | ACCAGCTTCCCAATTAGATCTCAGGAGGTGGGCGAGTaGGCTCAAGCATGTGCATTAAGTGGCAAAAAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: TSFPIRSQEVGE*AQACALSGKKA Trigger: TGCCTTTTTGCCACTTAATGCACATGCTTGAGCCCACTCGCCCACCTCCTGAGATCTAATTGGGAAGCTGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000470263.5 |
||
| CDS CAA 90 bp | CCCAAGCAGGTTCCACGAGTGGGTCAGAGAACTCTCCCATTTCAGTaGCTCTCCTTCACATCATCTTTCTTCTCTATTGCTGGCCCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: PKQVPRVGQRTLPFQ*LSFTSSFFSIAGPV Trigger: AACAGGGCCAGCAATAGAGAAGAAAGATGATGTGAAGGAGAGCAACTGAAATGGGAGAGTTCTCTGACCCACTCGTGGAACCTGCTTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000494340.2 ENST00000653255.1 ENST00000654980.1 |
||
| CDS CAA 72 bp | TTATTAATCTGTCTGCATCTCCCCTCCATAAAGGGTTaGAGCACATGGCAGCCCAAGCAGGTTCCACGAGTG | + |
|
Preference number: 6 (lower is better) Translates to: LLICLHLPSIKG*STWQPKQVPRV Trigger: CACTCGTGGAACCTGCTTGGGCTGCCATGTGCTCAAACCCTTTATGGAGGGGAGATGCAGACAGATTAATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494340.2 |
||
| CDS CAA 90 bp | AATATTTTCTCAACATACTGTCTGCATCTCCCCTCCATAAAGGGTTaGAGCACATGGCAGCCCAAGCAGGTTCCACGAGTGGGTCAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: NIFSTYCLHLPSIKG*STWQPKQVPRVGQR Trigger: TCTCTGACCCACTCGTGGAACCTGCTTGGGCTGCCATGTGCTCAAACCCTTTATGGAGGGGAGATGCAGACAGTATGTTGAGAAAATATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS CAA 72 bp | AGCTGGACTTTGGATGATCACTTCTCGAGCCCCACGTaGTGCACCACAAATGTTGCAGGACTTTTCCTTAGT | + |
|
Preference number: 6 (lower is better) Translates to: SWTLDDHFSSPT*CTTNVAGLFLS Trigger: ACTAAGGAAAAGTCCTGCAACATTTGTGGTGCACAACGTGGGGCTCGAGAAGTGATCATCCAAAGTCCAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000494340.2 ENST00000653255.1 ENST00000654980.1 |
||
| CDS TCA 72 bp | GAGCAAAGGCAGGGAGCAGCTGAATGCTTTTCCATATaGCCAAGAGTGGCTTATTATGACAATGACAGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: EQRQGAAECFSI*PRVAYYDNDSQ Trigger: CTGGCTGTCATTGTCATAATAAGCCACTCTTGGTCATATGGAAAAGCATTCAGCTGCTCCCTGCCTTTGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000470263.5 ENST00000494340.2 ENST00000653255.1 ENST00000654980.1 ENST00000666096.1 ENST00000666519.1 ENST00000668833.1 |
||
| CDS GCA 72 bp | AAGGCTTCCTCAAAAGCCAAGCAGATGCCACCATCATaGTTCATGTATAGCCTGTGGATCCATGAGCCAATT | + |
|
Preference number: 6 (lower is better) Translates to: KASSKAKQMPPS*FMYSLWIHEPI Trigger: AATTGGCTCATGGATCCACAGGCTATACATGAAGCATGATGGTGGCATCTGCTTGGCTTTTGAGGAAGCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS GCA 72 bp | ATAGGTTTCCTAAGGCTTCCTCAAAAGCCAAGCAGATaGCACCATCATGCTTCATGTATAGCCTGTGGATCC | + |
|
Preference number: 6 (lower is better) Translates to: IGFLRLPQKPSR*HHHASCIACGS Trigger: GGATCCACAGGCTATACATGAAGCATGATGGTGGCATCTGCTTGGCTTTTGAGGAAGCCTTAGGAAACCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS CCA 72 bp | AAGATTCAATCCAGACATATTGTGGTAGCTGGACTTTaGATGATCACTTCTCGAGCCCCACGTTGTGCACCA | + |
|
Preference number: 6 (lower is better) Translates to: KIQSRHIVVAGL*MITSRAPRCAP Trigger: TGGTGCACAACGTGGGGCTCGAGAAGTGATCATCCAAAGTCCAGCTACCACAATATGTCTGGATTGAATCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000494340.2 ENST00000653255.1 ENST00000654980.1 |
||
| CDS GCA 72 bp | TGTCCAGCCTCATGCTCCACTGGCTTTCAAATGTCTTaGACTACTGGCTCTCTGAATTTAGCTGTTGTATCT | + |
|
Preference number: 6 (lower is better) Translates to: CPASCSTGFQMS*TTGSLNLAVVS Trigger: AGATACAACAGCTAAATTCAGAGAGCCAGTAGTGCAAGACATTTGAAAGCCAGTGGAGCATGAGGCTGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS CCA 72 bp | GTCTGTCCCATGGCCGTAAAAATTCAGGCTCACAGATaGTTTGAAGGGTGTGTAAAGCAGGGTTTTATTGAG | + |
|
Preference number: 6 (lower is better) Translates to: VCPMAVKIQAHR*FEGCVKQGFIE Trigger: CTCAATAAAACCCTGCTTTACACACCCTTCAAACCATCTGTGAGCCTGAATTTTTACGGCCATGGGACAGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000470263.5 ENST00000494340.2 ENST00000653255.1 ENST00000654980.1 ENST00000666519.1 ENST00000668833.1 |
||
| CDS CAA 72 bp | TTGTCCAGCCTCATGCTCCACTGGCTTTCAAATGTCTaGCACTACTGGCTCTCTGAATTTAGCTGTTGTATC | + |
|
Preference number: 6 (lower is better) Translates to: LSSLMLHWLSNV*HYWLSEFSCCI Trigger: GATACAACAGCTAAATTCAGAGAGCCAGTAGTGCAAGACATTTGAAAGCCAGTGGAGCATGAGGCTGGACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS CAA 90 bp | CAATGCATCTTGTCCAGCCTCATGCTCCACTGGCTTTCAAATGTCTaGCACTACTGGCTCTCTGAATTTAGCTGTTGTATCTCTAGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: QCILSSLMLHWLSNV*HYWLSEFSCCISRV Trigger: AACTCTAGAGATACAACAGCTAAATTCAGAGAGCCAGTAGTGCAAGACATTTGAAAGCCAGTGGAGCATGAGGCTGGACAAGATGCATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS TCA 72 bp | TTTCATTGCCTTTTCCTAGCTTCCAAGGGCTCCCTGTaGTCTTCAGCATTCCTCATTCTAGCATTAACTCAA | + |
|
Preference number: 6 (lower is better) Translates to: FHCLFLASKGSL*SSAFLILALTQ Trigger: TTGAGTTAATGCTAGAATGAGGAATGCTGAAGATCACAGGGAGCCCTTGGAAGCTAGGAAAAGGCAATGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470263.5 |
||
| CDS TCA 72 bp | GAAGTAATTTGGAACAGTTCATGGGTTACTAAGCTGTaGTCCTGGATCAGAGGAATCCCGTTCTTACTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: EVIWNSSWVTKL*SWIRGIPFLLH Trigger: GTGAAGTAAGAACGGGATTCCTCTGATCCAGGATCACAGCTTAGTAACCCATGAACTGTTCCAAATTACTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS CCA 72 bp | CTCATGCTCCACTGGCTTTCAAATGTCTTGCACTACTaGCTCTCTGAATTTAGCTGTTGTATCTCTAGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: LMLHWLSNVLHY*LSEFSCCISRV Trigger: AACTCTAGAGATACAACAGCTAAATTCAGAGAGCCAGTAGTGCAAGACATTTGAAAGCCAGTGGAGCATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS CCA 72 bp | CCTAGTCTCAGATATTTGTTTACAGCAGTGCAAGAGTaGGCTAATCCACAGACAAGTGTCTTTCATCCAGTA | + |
|
Preference number: 6 (lower is better) Translates to: PSLRYLFTAVQE*ANPQTSVFHPV Trigger: TACTGGATGAAAGACACTTGTCTGTGGATTAGCCCACTCTTGCACTGCTGTAAACAAATATCTGAGACTAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS CCA 72 bp | GCACTTGAATATGTGTTGACCTACAGGTCTCTTAGGTaGATCAACCTCCATTCTCTGTTAGTTTTCTTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: ALEYVLTYRSLR*INLHSLLVFFQ Trigger: CTGGAAGAAAACTAACAGAGAATGGAGGTTGATCCACCTAAGAGACCTGTAGGTCAACACATATTCAAGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000666519.1 ENST00000668833.1 |
||
| CDS TCA 72 bp | TTCAAAGACTCAGATAAGGCTAGTCCCTTCTGCCAATaGGCCTGTTTGCTCTTTTATTTTCTGACTCATTCC | + |
|
Preference number: 6 (lower is better) Translates to: FKDSDKASPFCQ*ACLLFYFLTHS Trigger: GGAATGAGTCAGAAAATAAAAGAGCAAACAGGCTCATTGGCAGAAGGGACTAGCCTTATCTGAGTCTTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470263.5 |
||
| CDS TCA 72 bp | TCAGATCCTAAAAATATTTCCCTGAAGCGTTGTTACTaGGACCTCTGGTGTTACCATCTCATCCTGTTTGCT | + |
|
Preference number: 6 (lower is better) Translates to: SDPKNISLKRCY*DLWCYHLILFA Trigger: AGCAAACAGGATGAGATGGTAACACCAGAGGTCTCAGTAACAACGCTTCAGGGAAATATTTTTAGGATCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668833.1 |
||
| CDS TCA 72 bp | TCAGATCCTAAAAATATTTCCCTGAAGCGTTGTTACTaGGACCTCTGGTGTTACCATCTCATCCTGAATGAC | + |
|
Preference number: 6 (lower is better) Translates to: SDPKNISLKRCY*DLWCYHLILND Trigger: GTCATTCAGGATGAGATGGTAACACCAGAGGTCTCAGTAACAACGCTTCAGGGAAATATTTTTAGGATCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666519.1 |
||
| CDS GCA 72 bp | GTCAAAAAGTCAAACTGTGCACTTGATCTGTCAATCTaGCAGCTTGGCCTTCTTCCAAGTGTAATTTACTTC | + |
|
Preference number: 6 (lower is better) Translates to: VKKSNCALDLSI*QLGLLPSVIYF Trigger: GAAGTAAATTACACTTGGAAGAAGGCCAAGCTGGCAGATTGACAGATCAAGTGCACAGTTTGACTTTTTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000470263.5 |
||
| CDS CCA 72 bp | AGGGAGCAGCTGAATGCTTTTCCATATGACCAAGAGTaGCTTATTATGACAATGACAGCCAGAATATATGAG | + |
|
Preference number: 6 (lower is better) Translates to: REQLNAFPYDQE*LIMTMTARIYE Trigger: CTCATATATTCTGGCTGTCATTGTCATAATAAGCCACTCTTGGTCATATGGAAAAGCATTCAGCTGCTCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000470263.5 ENST00000494340.2 ENST00000653255.1 ENST00000654980.1 ENST00000666096.1 ENST00000666519.1 ENST00000668833.1 |
||
| CDS TCA 72 bp | CAGACAAGTGTCTTTCATCCAGTAAGTCACTTTCGGTaGGTTATAGAACACCTGATCACTGTGAAAGAATTC | + |
|
Preference number: 6 (lower is better) Translates to: QTSVFHPVSHFR*VIEHLITVKEF Trigger: GAATTCTTTCACAGTGATCAGGTGTTCTATAACTCACCGAAAGTGACTTACTGGATGAAAGACACTTGTCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS GCA 72 bp | CCCCCTTACTTCCTTCATCCAATCAGTCACAACCATTaGCAATTTAATCTTGAAAATGCTTCTGTTCTGTTC | + |
|
Preference number: 6 (lower is better) Translates to: PPYFLHPISHNH*QFNLENASVLF Trigger: GAACAGAACAGAAGCATTTTCAAGATTAAATTGGCAATGGTTGTGACTGATTGGATGAAGGAAGTAAGGGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000470263.5 ENST00000653255.1 ENST00000666096.1 ENST00000666519.1 ENST00000668833.1 |
||
| CDS GCA 72 bp | GATTACTTCTTCTTTAAACTGACTCAAGTAAAACTGTaGTCCCGAGGTTCTCATCAAGCAAGTATGTTTTGC | + |
|
Preference number: 6 (lower is better) Translates to: DYFFFKLTQVKL*SRGSHQASMFC Trigger: GCAAAACATACTTGCTTGATGAGAACCTCGGGAGCACAGTTTTACTTGAGTCAGTTTAAAGAAGAAGTAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||
| CDS TCA 72 bp | GATAATGCAATGCAATATCATATGGATCATTCAGCCTaGATAATAATTTCTCAACTGATATCTGCCGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: DNAMQYHMDHSA*IIISQLISAAA Trigger: GGCTGCGGCAGATATCAGTTGAGAAATTATTATTCAGGCTGAATGATCCATATGATATTGCATTGCATTATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654980.1 |
||